We suggest and evaluate a dynamic scheduling rule of machines and material handling systems for on-line operation in job shop type Flexible Manufacturing System. Alternating status should be able to take operation scheduling procedures and without delay in dynamic industrial environments effectively. The interaction(SPT-NS, SPT-QSNS, SPT-NUJ, EDD-NS, EDD-QSNS, EDD-NUJ, CR-NS, CR-QSNS, CR-NUJ) between machine operation scheduling and AGV dispatching rule were also studied in this research. The performance evaluation which was obtained from DSS compares the performance of Flow time, and Empty to loaded travel ratio. It is Compared with the best rules & two system.