An organic agriculture should be managed by mixed farming in farm unit as a closed recycling system. Due to restricted purchased of fertilizers from outside, organic farmer has to deal with limited amount of nutrient source in farm unit. Especially the supply of the essential nutrient, nitrogen, mostly depends on legumes fixing nitrogen optimizing the site-adapted crop rotation. Dynamics of humus and metabolic plant carbon and active soil carbon compartment in active and passive humuspool by rotation system was explained, and dynamics of potentially mineralizable nitrogen in organic nitrogen and biomass was discussed. It was also discussed comparison of ammonia emission, potential greenhouse effect, primary energy input, acidification potential, CO2 emission between organic and conventional farming, the nitrate-nitrogen dynamic in the soil profile by organic, integrated and conventional farming system. In conclusion, it was suggested for Korean Organic Agriculture that the importance of legumes and green manures in rotation system for increase/maintenance of soil ferfility, and was pointed out the need of investment for environment impact of Korean organic farming implement.