• Title/Summary/Keyword: Vibrational spectra

Search Result 151, Processing Time 0.024 seconds

Fluorescence Enhancement of Ethidium Bromide by DNA Bases and Nucleosides

  • Pyun, Chong-Hong;Park, Su-Moon
    • Bulletin of the Korean Chemical Society
    • /
    • v.10 no.2
    • /
    • pp.142-147
    • /
    • 1989
  • Fluorescence enhancements of ethidium bromide (EB) by solution species of low molecular weights such as DNA base molecules and nucleosides in water are reported. The degree of enhancements was determined by intensity as well as lifetime measurements for EB fluorescence. Experiments including solvent effects on absorbance and fluorescence spectra of EB, effects of protonation on the EB absorbance spectrum, and determination of equilibrium constants for EB-DNA bases have been performed to help explain the fluorescence enhancement. The results suggest that the excited state stabilization in the hydrophobic environment, the loss of torsional/vibrational energy of amino groups, and the change in the electronic transition characteristics are all responsible for the fluorescence enhancement.

Configuration Interaction Theory and van der Waals Predissociation

  • 이천우
    • Bulletin of the Korean Chemical Society
    • /
    • v.16 no.9
    • /
    • pp.850-858
    • /
    • 1995
  • Golden-rule like formulas have been used without theoretical basis to calculate the resonance lifetimes and final state distributions in the predissociation of van der Waals molecules. Here we present their theoretical basis by extending Fano's configuration interaction theory. Such extensions were independently done by Farnonux [Phys. Rev. 1985, 25, 287] but his work, unfortunately, was not well known outside some small group of people in the field of Auger spectroscopy. Since my extension is easier to understand than his, it is presented here. Theoretical basis of Golden rule like formulas used in the predissociation of van der Waals molecules was obtained by using such extensions. Factors responsible for several aspects of predissociation dynamics, such as variations of dynamics as functions of resonance lifetimes, or variations in shapes of final quantum state distributions of photofragments around resonances, were identified. Parameters, or dynamical information that could be obtained from the measurement of partial cross section spectra were accordingly determined. The theory was applied to the vibrational predissociation of triatomic van der Waals molecules and its result was compared with those calculated by close-coupling method. An example where Golden-rule like expression fails and branching ratios vary greatly around a resonance was considered.

Application of Multichannel Quantum Defect Theory to the Triatomic van der Waals Predissociation Process II

  • 이천우
    • Bulletin of the Korean Chemical Society
    • /
    • v.16 no.10
    • /
    • pp.957-968
    • /
    • 1995
  • Generalized Multichannel Quantum Defect theory (MQDT) was implemented to the vibrational predissociation of triatomic van der Waals molecules in the previous paper [Bull. Korean Chem. Soc, 12, 228 (1991)]. Implementation was limited to the calculation of the scattering matrix. It is now extended to the calculation of the predissociation spectra and the final rotational distribution of the photofragment. The comparison of the results with those obtained by other methods, such as Golden-rule type calculation, infinite order sudden approximation (IOS), and close-coupling method, shows that the implementation is successful despite the fact that transition dipole moments show more energy dependence than other quantum defect parameters. Examination of the short-range channel basis functions shows that they resemble angle-like functions and provide the validity of the IOS approximation. Besides the validity of the latter, only a few angles are found to play the major role in photodissociation. In addition to the implementation of MQDT, more progress in MQDT itself is made and reported here.

Molecular Dynamics Simulation Studies of Zeolite A. VIII. Structure and Dynamics of Na+ ions in a Non-Rigid Dehydrated Zeolite-A Framework

  • 이송희;최상구
    • Bulletin of the Korean Chemical Society
    • /
    • v.20 no.5
    • /
    • pp.587-591
    • /
    • 1999
  • A molecular dynamics simulation study on the structure and dynamics of Na+ ions in non-rigid dehydrated Na12-A zeolite framework at 298.15 K was conducted using the same method reported in previous studies on rigid and non-rigid Na12-A zeolite frameworks. The agreement between the experimental and calculated results for the zeolite-A framework atoms of structural parameters for non-rigid dehydrated Na12-A zeolite is generally quite good, and for the adsorbed Na+ions the agreement is acceptable. The calculated bond lengths are generally in good agreement with the experimental results and other theoretical data. The calculated IR spectrum by Fourier transform of the total dipole moment autocorrelation function shows two major peaks around 2700 cm-1 and 7000 cm-1. The former appeared in the calculated IR spectra of non-rigid zeolite-A framework only system and the latter remains unexplained except, perhaps, indicating a new formation of a vibrational mode of the framework due to the adsorption of Na+ ions. The peaks above 6200-6800 cm-1 in non-rigid dehydrated Nal2-A zeolite are much larger than those in non-rigid dehydrated H12-A zeolite.

Identification of OH emission lines from IGRINS sky spectra and improved sky subtraction method

  • Lee, Jae-Joon
    • The Bulletin of The Korean Astronomical Society
    • /
    • v.44 no.1
    • /
    • pp.72.2-72.2
    • /
    • 2019
  • The hydroxyl radical (OH) sky emission lines arise from the Earth's mesosphere, and they serve as a major source of the sky background in the infrared. With IGRINS, the observed line strength show non-negligible variation even within a few minutes of time scale, making its subtraction difficult. Toward the aim better sky subtraction in the IGRINS pipeline, we present 1) improved identification of sky lines in H and K band and 2) improved method of subtracting sky background. Using the recent line list of Brooke et al. (2015), we have detected ~500 OH doublets from upper vibrational level between 2 and 9 and maximum upper J level of 25. In particular, we found that a significant fraction of unidentified lines reported by Oliva et al. (2015) are indeed OH lines resulting from transitions between different F levels. With the extended line identification, we present an improved method of sky subtraction. The method, based on the method of Noll et al. (2014), empirically accounts non-LTE level population of OH molecules.

  • PDF

Application of Multichannel Quantum Defect Theory to the Triatomic van der Waals Predissociation Process

  • Chun-Woo Lee
    • Bulletin of the Korean Chemical Society
    • /
    • v.12 no.2
    • /
    • pp.228-238
    • /
    • 1991
  • Generalized multichannel quantum defect theory [C. H. Greene et al. Phys. Rev., A26, 2441 (1982)] is implemented to the vibrational predissociation of triatomic van der Waals molecules. As this is the first one of such an application, the dependences of the quantum defect parameters on energy and radius are examined carefully. Calculation shows that, in the physically important region, quantum defect parameters remain smoothly varying functions of energy for this system as in atomic applications, thus allowing us very coarse energy mesh calculations for the photodissociation spectra. The choice of adiabatic or diabatic potentials as reference potentials for the calculation of quantum defect parameters as done by Mies and Julienne [J. Chem. Phys., 80, 2526 (1984)] can not be used for this system. Physically motivated reference potentials that may be generally applicable to all kinds of systems are utilized instead. In principle, implementation can be done to any other predissociation processes with the same method.

The Importance of Thermodynamic Quantities for the Determination of the Unknown Conformation: Ab initio Studies of$ K^+(H_2O)_3$

  • 이한명;Son, Hyeon S.;민병진
    • Bulletin of the Korean Chemical Society
    • /
    • v.20 no.3
    • /
    • pp.345-351
    • /
    • 1999
  • The structures, the energetics, and the spectra of K+(H2O)3 have been studied at HF and MP2 levels with the basis set of triple-zeta plus two sets of polarization functions (TZ2P) for water molecules. Two structures considered are 3+0 (D3), and 2+1 (C2v). The 2+1 (C2v) has two hydrogen bonds between the primary hydration and the secondary hydration shell water molecules. They have similar binding energy and enthalpy. The most stable conformation of K+(H2O)3 is entropy driven as shown in Na+(H2O)5 and in Na+(H2O)6 cases. The 3+0 (D3) conformation is the most stable at 298 K and at 1 atm, based on Gibbs free energy changes (ΔGr). The thermal contributions to the enthalpy and the Gibbs free energy are corrected for the low frequency modes. The corrected ΔGr is in good agreement with the experimental value. Vibrational frequencies of two conformations are revealed as their characteristics.

Thr Adsorption and Decomposition of NO on a Stepped Pt(111) Surface

  • Lee, S. B.;Kang, D. H.;Park, C. Y.;Kwak, H. T.
    • Bulletin of the Korean Chemical Society
    • /
    • v.16 no.2
    • /
    • pp.157-163
    • /
    • 1995
  • The adsorption and decomposition of NO on a stepped Pt(111) surface have been studied using thermal desorption spectroscopy and Auger electron spectroscopy. NO adsorbs molecularly in two different states of the terrace and the step, which are distinguishable in thermal desorption spectra. NO dissociates via a bent species at the step sites on the basis of vibrational spectrum data reported previously. The dissociation of NO is an activation process : the activation energy is estimated to be about 2 kcal/mol. Increase in the NO dissociation with adsorption temperature is explained by a process controlled by diffusion of the dissociated atomic nitrogen from the step to the terrace of the surface. In addition to NO and N2, the desorption peak of N2O is observed. We conclude that the formation of N2O is attributed to surface reaction of NO and N adsorbed on the surface.

Structural detection of variation in Poisson's ratio: Monitoring system for zigzag double walled carbon nanotubes

  • Hussain, Muzamal;Asghar, Sehar;Ayed, Hamdi;Khadimallah, Mohamed A.;Alshoaibi, Adil;Tounsi, Abdelouahed
    • Advances in nano research
    • /
    • v.12 no.4
    • /
    • pp.345-352
    • /
    • 2022
  • In this paper, natural frequency curves are presented for three specific end supports considering distinct values of nonlocal parameter. The vibrational behavior of zigzag double walled carbon nanotubes is investigated using wave propagation with nonlocal effect. Frequency spectra of zigzag (12, 0) double walled carbon nanotubes have been analyzed with proposed model. Effects of nonlocal parameters have been fully investigated on the natural frequency against against variation of Poisson's ratio. A slow increase in frequencies against variation of Poisson's ratio also indicates insensitivity of it for suggested nonlocal model. Moreover, decrease in frequencies with increase in nonlocal parameter authenticates the applicability of nonlocal Love shell model. Also the frequency curves for C-F are lower throughout the computation than that of C-C curves.

Detection of localized defects in ball bearing using phase spectrum (위상스펙트럼을 이용한 볼베어링의 국부결함 검출)

  • Yoon, J.H.;Lee, J.M.
    • Journal of the Korean Society for Precision Engineering
    • /
    • v.13 no.3
    • /
    • pp.63-69
    • /
    • 1996
  • Recently, vibrational signal processing as a tool of machinery diagnosis has been actively studying. In this study, a new scheme for detection and diagnosis of localized defects in ball bearings, using unwrapped phase spectrum of FFT is described. The characteristic phase spectra for such defects shows linearly varying patterns due to the repetitive impact signals generated by localized defects, i.e., one linear line for single defect and various linearly changing shape according to angle between the two defect located points. The effectiveness of this method is confirmed by computer simulation and experiments on bearing with single or double defects at different locations.

  • PDF