• Structural Engineering and Mechanics
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• v.38 no.4
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• pp.405-416
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• 2011

An efficient two-level domain decomposition parallel algorithm is suggested to solve large-DOF structural problems with nonlinear material models generating unsymmetric tangent matrices, such as a group of plastic-damage material models. The parallel version of the stabilized bi-conjugate gradient method is developed to solve unsymmetric coarse problems iteratively. In the present approach the coarse DOF system is solved parallelly on each processor rather than the whole system equation to minimize the data communication between processors, which is appropriate to maintain the computing performance on a non-supercomputer level cluster system. The performance test results show that the suggested algorithm provides scalability on computing performance and an efficient approach to solve large-DOF nonlinear structural problems on a cluster system.

• Wind and Structures
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• v.18 no.1
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• pp.21-35
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• 2014

The latest developments in topology optimization are integrated with Computational Fluid Dynamics (CFD) for the conceptual design of building structures. The wind load on a building is simulated using CFD, and the structural response of the building is obtained from finite element analysis under the wind load obtained. Multiple wind directions are simulated within a single fluid domain by simply expanding the simulation domain. The bi-directional evolutionary structural optimization (BESO) algorithm with a scheme of material interpolation is extended for an automatic building topology optimization considering multiple wind loading cases. The proposed approach is demonstrated by a series of examples of optimum topology design of perimeter bracing systems of high-rise building structures.

• Proceedings of the Korean Geotechical Society Conference
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• 2010.03a
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• pp.771-776
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• 2010

Since the importance of seismic design is greater, dynamic analysis is more widely using than past. The input motion is one of the most important factors of dynamic analysis. However, in Korea input motions are selected from U.S. and Japan those are captured from large magnitude earthquakes without considering seismic environment or generated in frequency domain. In this research, the methodology for generating input motions those are considered seismic environment and design code is proposed. The seismic environment compatibility is considered by performing deaggregation and the design code compatibility is considered by time-domain artificial time history accelration generation method. The results shows that seismic environment and design code compatible input motions are successfully generated.

• Structural Monitoring and Maintenance
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• v.1 no.1
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• pp.69-87
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• 2014

A new output only modal analysis method is developed in this paper. This method uses continuous wavelet transform to modify a popular blind source separation algorithm, second order blind identification (SOBI). The wavelet modified SOBI (WMSOBI) method replaces original time domain signal with selected time-frequency domain wavelet coefficients, which overcomes the shortcomings of SOBI. Both numerical and experimental studies on bridge models are carried out when there are limited number of sensors. Identified modal properties from WMSOBI are analyzed and compared with fast Fourier transform (FFT), SOBI and eigensystem realization algorithm (ERA). The comparison shows WMSOBI can identify as many results as FFT and ERA. Further case study of structural health monitoring (SHM) on an arch bridge verifies the capability to detect damages by combining WMSOBI with incomplete flexibility difference method.

• 한국전산유체공학회:학술대회논문집
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• 2006.05a
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• pp.21-26
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• 2006

A large-scale finite element simulation and modeling method is presented for environmental flows in urban area. Parallel stabilized finite element method based on domain decomposition method is employed for the numerical simulation. Several GIS and CAD data are used for the preparation of the shape model for landform and urban structures. The present method Is applied to the simulation of flood flow and wind flow In urban area. The present method is shown to be a useful planning and design tool for the natural disasters and the change of environments in urban area.

• Molecules and Cells
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• v.24 no.2
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• pp.276-282
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• 2007

Protein phosphorylation is one of the major mechanisms by which eukaryotic cells transduce extracellular signals into intracellular responses. Calcium/calmodulin ($Ca^{2+}/CaM$)-dependent protein phosphorylation has been implicated in various cellular processes, yet little is known about $Ca^{2+}/CaM$-dependent protein kinases (CaMKs) in plants. From an Arabidopsis expression library screen using a horseradish peroxidase-conjugated soybean calmodulin isoform (SCaM-1) as a probe, we isolated a full-length cDNA clone that encodes AtCK (Arabidopsis thaliana calcium/calmodulin-dependent protein kinase). The predicted structure of AtCK contains a serine/threonine protein kinase catalytic domain followed by a putative calmodulin-binding domain and a putative $Ca^{2+}$-binding domain. Recombinant AtCK was expressed in E. coli and bound to calmodulin in a $Ca^{2+}$-dependent manner. The ability of CaM to bind to AtCK was confirmed by gel mobility shift and competition assays. AtCK exhibited its highest levels of autophosphorylation in the presence of 3 mM $Mn^{2+}$. The phosphorylation of myelin basic protein (MBP) by AtCK was enhanced when AtCK was under the control of calcium-bound CaM, as previously observed for other $Ca^{2+}/CaM$-dependent protein kinases. In contrast to maize and tobacco CCaMKs (calcium and $Ca^{2+}/CaM$-dependent protein kinase), increasing the concentration of calmodulin to more than $3{\mu}M$ suppressed the phosphorylation activity of AtCK. Taken together our results indicate that AtCK is a novel Arabidopsis $Ca^{2+}/CaM$-dependent protein kinase which is presumably involved in CaM-mediated signaling.

• Proceedings of the KSEEG Conference
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• 1999.04a
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• pp.120-122
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• 1999

• Journal of the Computational Structural Engineering Institute of Korea
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• v.34 no.6
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• pp.427-435
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• 2021

An analysis considering the fluid-structure interaction is required to strictly evaluate the seismic behavior of facilities such as, environmental facilities and dams, that store fluids. Specifically, in the case of an infinite domain in the upstream direction, such as a dam-reservoir system, this should be carefully considered. In this study, we proposed a practical numerical model for both wave propagation and fluid-structure interaction analyses of an infinite domain, for a system with a semi-infinite domain such as a dam-reservoir system. This method was applicable to the time domain, and enabled accurate boundary analysis. For an infinite fluid domain, a small number of mid-point integrated acoustic finite elements were applied instead of a general acoustic finite element, and a viscous boundary was imposed on the outermost boundary. The validity and accuracy of the proposed method were secured by comparing analytic solutions of a reservoir having infinite domain, with the parametric analysis results, for the number of elements and the size of the modeling region. Furthermore, the proposed method was compared with other fluid-structure interaction methods using additional mass.

• Journal of the Korean GEO-environmental Society
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• v.25 no.4
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• pp.13-20
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• 2024

In this paper, a parallel analysis algorithm for Smoothed Particle Hydrodynamics (SPH), one of the numerical methods for fluidic materials, is introduced. SPH, which is a meshless method, can represent the behavior of a continuum using a particle-based approach, but it demands substantial computational resources. Therefore, parallel analysis algorithms are essential for SPH simulations. The domain decomposition algorithm, which divides the computational domain into partitions to be independently analyzed, is the most representative method among parallel analysis algorithms. In Discrete Element Method (DEM) and Molecular Dynamics (MD), the Cartesian coordinate-based domain decomposition method is popularly used because it offers advantages in quickly and conveniently accessing particle positions. However, in SPH, it is important to share particle information among partitioned domains because SPH particles are defined based on information from nearby particles within the smoothing length. Additionally, maintaining CPU load balance is crucial. In this study, a highly parallel efficient algorithm is proposed to dynamically minimize the size of orthogonal domain partitions to prevent excess CPU utilization. The efficiency of the proposed method was validated through numerical analysis models. The parallel efficiency of the proposed method is evaluated for up to 30 CPUs for fluidic models, achieving 90% parallel efficiency for up to 28 physical cores.

• Journal of the Korean GEO-environmental Society
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• v.25 no.4
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• pp.21-28
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• 2024

In this study, a polyhedral domain decomposition method for Smoothed Particle Hydrodynamics (SPH) analysis is introduced. SPH which is one of meshless methods is a numerical analysis method for fluid flow simulation. It can be useful for analyzing fluidic soil or fluid-structure interaction problems. SPH is a particle-based method, where increased particle count generally improves accuracy but diminishes numerical efficiency. To enhance numerical efficiency, parallel processing algorithms are commonly employed with the Cartesian coordinate-based domain decomposition method. However, for parallel analysis of complex geometric shapes or fluidic problems under dynamic boundary conditions, the Cartesian coordinate-based domain decomposition method may not be suitable. The introduced polyhedral domain decomposition technique offers advantages in enhancing parallel efficiency in such problems. It allows partitioning into various forms of 3D polyhedral elements to better fit the problem. Physical properties of SPH particles are calculated using information from neighboring particles within the smoothing length. Methods for sharing particle information physically separable at partitioning and sharing information at cross-points where parallel efficiency might diminish are presented. Through numerical analysis examples, the proposed method's parallel efficiency approached 95% for up to 12 cores. However, as the number of cores is increased, parallel efficiency is decreased due to increased information sharing among cores.