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GSK-J4-Mediated Transcriptomic Alterations in Differentiating Embryoid Bodies

  • Mandal, Chanchal;Kim, Sun Hwa;Kang, Sung Chul;Chai, Jin Choul;Lee, Young Seek;Jung, Kyoung Hwa;Chai, Young Gyu
    • Molecules and Cells
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    • v.40 no.10
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    • pp.737-751
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    • 2017
  • Histone-modifying enzymes are key players in the field of cellular differentiation. Here, we used GSK-J4 to profile important target genes that are responsible for neural differentiation. Embryoid bodies were treated with retinoic acid ($10{\mu}M$) to induce neural differentiation in the presence or absence of GSK-J4. To profile GSKJ4-target genes, we performed RNA sequencing for both normal and demethylase-inhibited cells. A total of 47 and 58 genes were up- and down-regulated, respectively, after GSK-J4 exposure at a log2-fold-change cut-off value of 1.2 (p-value < 0.05). Functional annotations of all of the differentially expressed genes revealed that a significant number of genes were associated with the suppression of cellular proliferation, cell cycle progression and induction of cell death. We also identified an enrichment of potent motifs in selected genes that were differentially expressed. Additionally, we listed upstream transcriptional regulators of all of the differentially expressed genes. Our data indicate that GSK-J4 affects cellular biology by inhibiting cellular proliferation through cell cycle suppression and induction of cell death. These findings will expand the current understanding of the biology of histone-modifying enzymes, thereby promoting further investigations to elucidate the underlying mechanisms.

ON THE LARGE DEVIATION FOR THE GCF𝝐 EXPANSION WHEN THE PARAMETER 𝝐 ∈ [-1, 1]

  • Zhong, Ting
    • Journal of the Korean Mathematical Society
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    • v.54 no.3
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    • pp.835-845
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    • 2017
  • The $GCF_{\epsilon}$ expansion is a new class of continued fractions induced by the transformation $T_{\epsilon}:(0, 1]{\rightarrow}(0, 1]$: $T_{\epsilon}(x)={\frac{-1+(k+1)x}{1+k-k{\epsilon}x}}$ for $x{\in}(1/(k+1),1/k]$. Under the algorithm $T_{\epsilon}$, every $x{\in}(0,1]$ corresponds to an increasing digits sequences $\{k_n,n{\geq}1\}$. Their basic properties, including the ergodic properties, law of large number and central limit theorem have been discussed in [4], [5] and [7]. In this paper, we study the large deviation for the $GCF_{\epsilon}$ expansion and show that: $\{{\frac{1}{n}}{\log}k_n,n{\geq}1\}$ satisfies the different large deviation principles when the parameter ${\epsilon}$ changes in [-1, 1], which generalizes a result of L. J. Zhu [9] who considered a case when ${\epsilon}(k){\equiv}0$ (i.e., Engel series).

The warm CO gas along the UV-heated outflow walls: a possible interpretation for the Herschel-PACS CO spectra of embedded YSO

  • Lee, Seokho;Lee, Jeong-Eun;Bergin, Edwin A.;Park, Yong-Sun
    • The Bulletin of The Korean Astronomical Society
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    • v.38 no.2
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    • pp.67.2-67.2
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    • 2013
  • Part of mid-J CO emission detected by the Herschel/PACS observations of embedded young stellar objects (YSOs) has been attributed to the UV-heated outflow walls. We have applied our newly developed self-consistent models of Photon Dominated Region (PDR) and Non-LTE line Radiative transfer In general Grid (RIG) to the Herschel FIR CO observations. If the black body radiation of T = 15,000 K is used, the observed mid-J CO line fluxes can be produced in inner dense regions (n ${\geq}$ 106 cm-3) with -4.5 ${\leq}$ log Gdust/n ${\leq}$ -2.5, where gas temperatures are larger than 300 K and CO abundances are ${\geq}$ 10-5, along the UV-heated outflow walls. The contribution of the UV heated outflow cavity wall in Class I seems to be larger than that in Class 0.

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Microbial Quality and TBA Values of Chicken Patties as Affected by Irradiation and Storage Temperature (방사선 조사에 의한 닭고기 가공제품인 Patty의 미생물 및 TBA가 변화)

  • Chuang, J.T.;Yi, Y.H.;Chen, T.C.
    • Korean Journal of Food Science and Technology
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    • v.22 no.3
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    • pp.290-295
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    • 1990
  • prefried chicken patties were irradiated with doses of 0, 2, and 4kGy, and stored at $3{\pm}1^{\circ}C\;and\;-10{\pm}1^{\circ}C$, separately for the evaluation of microbiological quality and TBA values. Gamma irradiation increased (p<0.05) the shelf life of chicken patties stored at $3{\pm}1^{\circ}C$. The time required to reach a log number of 6.5/g was 22 days for the control, while 43 and 44 days for 2 and 4 kGy-irradiated samples, respectively. No microorganism was isolated from patties irradiated at 4 kGy. Irradiation decreased the incidence of gram-positive cocci-type organisms In patties ; while yeasts and gram-negative rod-type organisms dominated the microbial population isolated from 2 and 4 kGy-irradiated samples, respectively. TBA values were increased (p<0.05) as the irradiation dose increased and the storage time progressed.

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The Novel SCN- Ion-selective Electrode Based on the 1-Benzyl-3-(4-nitrophenyl) thio-urea Ionophore

  • Lee, Kyungmi;Kang, Dong Hyeon;Choe, Ju Eun;Yun, Mira;You, Jung-Min;Go, Min Jeong;Lee, Junseong;Jeon, Seungwon
    • Bulletin of the Korean Chemical Society
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    • v.35 no.11
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    • pp.3175-3180
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    • 2014
  • A potentiometric sensor based on the 1-benzyl-3-(4-nitrophenyl) thio-urea was synthesized and tested as an ionophore in PVC based membrane sensor towards $SCN^-$ ions. This membrane exhibits a linear stable response over a wide concentration range ($1.0{\times}10^{-5}$ to $1.0{\times}10^{-2}M$) with a slope of -59.2 mV/dec., a detection limit of ${\log}[SCN^-]=-5.05$, and a selectivity coefficient for thiocyanate against perchlorate anion of ${\log}K^{pot}_{SCN^-j}=-0.133$. The selectivity series of the membrane is as follows: $SCN^-$ > $ClO_4{^-}$ > $I^-$ > $NO_3{^-}$ > $HSO_3{^-}$ > $Cl^-$ > $HSO_4{^-}$ > $F^-$ > $CH_3COO^-$ > $HCO_3{^-}$ > $Br^-$ > $H_2PO_4{^-}$ > $SO{_3}^{2-}$ > $SO{_4}^{2-}$ > $CO{_3}^{2-}$. The proposed electrode showed good selectivity and a good response for the $SCN^-$ ion over a wide variety of other anions in pH 6.0 buffer solutions and has a fast response time of about < 5s. The influences of the membrane by pH, ionophore, and plasticizer were studied.

Photoinactivation of major bacterial pathogens in aquaculture

  • Roh, Heyong Jin;Kim, Ahran;Kang, Gyoung Sik;Kim, Do-Hyung
    • Fisheries and Aquatic Sciences
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    • v.19 no.6
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    • pp.28.1-28.7
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    • 2016
  • Background: Significant increases in the bacterial resistance to various antibiotics have been found in fish farms. Non-antibiotic therapies for infectious diseases in aquaculture are needed. In recent years, light-emitting diode technology has been applied to the inactivation of pathogens, especially those affecting humans. The purpose of this study was to assess the effect of blue light (wavelengths 405 and 465 nm) on seven major bacterial pathogens that affect fish and shellfish important in aquaculture. Results: We successfully demonstrate inactivation activity of a 405/465-nm LED on selected bacterial pathogens. Although some bacteria were not fully inactivated by the 465-nm light, the 405-nm light had a bactericidal effect against all seven pathogens, indicating that blue light can be effective without the addition of a photosensitizer. Photobacterium damselae, Vibrio anguillarum, and Edwardsiella tarda were the most susceptible to the 405-nm light (36.1, 41.2, and $68.4J\;cm^{-2}$, respectively, produced one log reduction in the bacterial populations), whereas Streptococcus parauberis was the least susceptible ($153.8J\;cm^{-2}$ per one log reduction). In general, optical density (OD) values indicated that higher bacterial densities were associated with lower inactivating efficacy, with the exception of P. damselae and Vibrio harveyi. In conclusion, growth of the bacterial fish and shellfish pathogens evaluated in this study was inactivated by exposure to either the 405- or 465-nm light. In addition, inactivation was dependent on exposure time. Conclusions: This study presents that blue LED has potentially alternative therapy for treating fish and shellfish bacterial pathogens. It has great advantages in aspect of eco-friendly treating methods differed from antimicrobial methods.

ORFEUS OBSERVATIONS OF ULTRAVIOLET EXCITED HIGH-J MOLECULAR HYDROGEN

  • Lee, Dae-Hee;Dixon, W. Van Dyke;Min, Kyoung-Wook;Pak, Soo-Jong
    • Journal of The Korean Astronomical Society
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    • v.42 no.6
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    • pp.145-153
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    • 2009
  • We present measurements of diffuse interstellar $H_2$ absorption lines in the continuum spectra of 10 early-type stars. The data were observed with the Berkeley Extreme and Far-Ultraviolet Spectrometer (BEFS) of the ORFEUS telescope on board the ORFEUS-SPAS I and II space-shuttle missions in 1993 and 1996, respectively. The spectra extend from the interstellar cutoff at 912 $\AA$ to about 1200 $\AA$ with a resolution of ~ 3000 and statistical signal-to-noise ratios between 10 and 65. Adopting Doppler broadening velocities from high-resolution optical observations, we obtain the $H_2$ column densities of rotational levels J" = 0 through 5 for each line of sight. The kinetic temperatures derived from J" = 0 and 1 states show a small variation around the mean value of 80 K, except for the component toward HD 219188, which has a temperature of 211 K. Based on a synthetic interstellar cloud model described in our previous work, we derive the incident UV intensity IUV and the hydrogen density $n_H$ of the observed components to be -0.4 $\leq$ log $I_{UV}\leq2.2$ and $6.3{\leq}n_H2500cm^{-3}$, respectively.

Low Temperature Inducible Acid Tolerance Response in virulent Salmonella enterica serovar Typhimurium (병원성 Salmonella enterica serovar Typhimurium의 저온 유도성 산 내성 반응)

  • Song, Sang-Sun;Lee, Sun;Lee, Mi-Kyoung;Lim, Sung-Young;Cho, Min-Ho;Park, Young-Keun;Park, Kyeong-Ryang;Lee, In-Soo
    • Korean Journal of Microbiology
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    • v.37 no.3
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    • pp.228-233
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    • 2001
  • The acid tolerance response (ATR) of log-phase Salmouella enterica seroyar Typhimurium is induced by acid adaptation below pH4.5 and will protect cells against more severe acid. Two distinctive ATR systems in thisorganism are a log-phase and stationary-phase ATR in which acid adaptations trigger the synthesis of acid shockproteins (ASPs). We found that log-phase ATR system was strongly affected by environmental factor, low tem-perature, $25^{\circ}C$. Exposure to low temperature and mild acid has been shown to increase acid survival dra-matically, and this survival rate was showed higher than $37^{\circ}C$. Especially unadapted cells at $25^{\circ}C$ presented tenthousand folds survival increasing when compared with cells at $37^{\circ}C$. The degree of acid tolerance of rpoSwhich is blown to be required for acid tolerance more increase than $37^{\circ}C$. Even though AIR pattern of rpoSbetween unadapted and adapted was showed similar at pH 3.1, rpoS-dependent ATR system also has beendetected in low temperature because rpoSAp prevents sustained acid survival at $25^{\circ}C$. Therefore the resultssuggest low temperature ATR system requires rpoS-dependent and -independent both. To investigate the basisfor low temperature related ATR system, gene that was participated for low temperature acid tolerance (lat) wasscreened in virulent S. enterica serovar Typhimurium UKl Using the technique of P22- MudJ (Km, lacZ)-directed lacZ operon fusion, LF452 latA‥‥MudJ was isolated. The latA‥‥MudJ of S. enterica Typhimurium pre-vented low temperature acid tolerance response. Therefore latA is considered one of the important genes for acidadaptation.

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The Role of the Hydrophobic Group on Ring A of Chalcones in the Inhibition of Interleukin-5

  • Yang, Hyun-Mo;Shin, Hye-Rim;Cho, Soo-Hyun;Song, Gyu-Yong;Lee, In-Jeong;Kim, Mi-Kyeong;Lee, Seung-Ho;Ryu, Jae-Chun;Kim, Young-Soo;Jung, Sang-Hun
    • Archives of Pharmacal Research
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    • v.29 no.11
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    • pp.969-976
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    • 2006
  • Novel chalcones were found as potent inhibitors of interleukin-5 (II-5). 1-(6-Benzyloxy-2-hydroxyphenyl)-3-(4-hydroxyphenyl)propenone (2a, 78.8% inhibition at $50\;{\mu}M,\;IC_{50}=25.3\;{\mu}M$) was initially identified as a potent inhibitor of IL-5. This activity is comparable to that of budesonide or sophoricoside (1a). The benzyloxy group appears to be critical for the enhancement of the IL-5 inhibitory activity. To identify the role of this hydrophobic moiety, cyclohexyloxy (2d), cyclohexylmethoxy (2c), cyclohexylethoxy (2e), cyclohexylpropoxy (2f), 2-methylpropoxy (2g), 3-methylbutoxy (2h), 4-methylpentoxy (2i), and 2-ethylbutoxy (2j) analogs were prepared and tested for their effects on IL-5 bioactivity. Compounds 2c ($IC_{50}=12.6\;{\mu}M$), 2d ($IC_{50}=12.2\;{\mu}M$), and 2i ($IC_{50}=12.3\;{\mu}M$) exhibited the most potent activity. Considering the cLog P values of 2, the alkoxy group contributes to the cell permeability of 2 for the enhancement of activity, rather than playing a role in ligand motif binding to the receptor. The optimum alkoxy group in ring A of 2 should be one that provides the cLog P of 2 in the range of 4.22 to 4.67.

Assessment of Coal Dust Exposure in Korean Mine in 1980's (1980년대 초 한국 석탄 탄광의 자료를 이용한 로그-정규분포의 적용)

  • Lee, Kiyoung;Sherwood, R.J.
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.22 no.4
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    • pp.345-352
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    • 2012
  • 1980년대 초 Sherwood교수가 한국에 와 있으면 당시 탄광의 호흡성먼지의 농도를 측정한 자료를 활용하여 로그-정규분포에 대한 분석을 한 자료이다. 탄광의 건조상태에서 농도는 물을 뿌리면서 하는 작업에 비해 매우 높은 수준을 보인다. 건조한 탄광에서 기하평균농도는 $26.1mg/m^{3}$이었고 물을 뿌린 탄광에서는 $4.1mg/m^{3}$이었다. 이는 매우 높은 수준이었음을 알 수 있다. 각 탄갱에서의 농도는 로그정규분포를 하였고 석탄을 접하는 탄갱에서의 농도는 $1.65mg/m^{3}$에서 $35mg/m^{3}$까지 다양하였다. 호흡성분진의 농도는 석탄을 접하는 탄갱에서 암석을 접하는 탄갱보다 높았는데 이는 분진의 원인이 석탄 때문이었다.