• Title/Summary/Keyword: H-domain

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Effect of Polar Amino Acid Residue Substitution by Site-Directed Mutagenesis in the N-terminal Domain of Pseudomonas sp. Phytase on Enzyme Activity

  • Lee, Ga Hye;Jang, Won Je;Kim, Soyeong;Kim, Yoonha;Kong, In-Soo
    • Journal of Microbiology and Biotechnology
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    • v.30 no.7
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    • pp.1104-1107
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    • 2020
  • The N-terminal domain of the Pseudomonas sp. FB15 phytase increases low-temperature activity and catalytic efficiency. In this study, the 3D structure of the N-terminal domain was predicted and substitutions for the amino acid residues of the region assumed to be the active site were made. The activity of mutants, in which alanine (A) was substituted for the original residue, was investigated at various temperatures and pH values. Significant differences in enzymatic activity were observed only in mutant E263A, suggesting that the amino acid residue at position 263 of the N-terminal domain is important in enzyme activity.

Numerical Simulation of 2-D Estuaries and Coast by Multi-Domain and the Interpolating Matrix Method (Multi-Domain과 행렬 보간법을 이용한 강 하구와 연안의 2차원 수치해석)

  • Chae H. S.
    • Journal of computational fluids engineering
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    • v.2 no.1
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    • pp.21-28
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    • 1997
  • This paper presents a two-dimensional horizontal implicit model to general circulation in estuaries and coastal seas. The model is developed in non-orthogonal curvilinear coordinates system, using the Interpolating Matrix Method (IMM), in combination with a technique of multi-domain. In the propose model, the Saint-Venant equations are solved by a splitting-up technique, in the successive steps; convection, diffusion and wave propagation. The ability of the proposed model to deal with full scale nature is illustrated by the interpretation of a dye-tracing experiment in the Gironde estuary.

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A Survey of Robust Control in Both Frequency Domain and Time Domain (주파수와 시간영역에서의 강인제어에 관한 연구동향조사)

  • Jeung, Eun Tae;Park, Hong Bae
    • Journal of Institute of Control, Robotics and Systems
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    • v.20 no.3
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    • pp.270-276
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    • 2014
  • This survey paper reviews robust control problems in both frequency domain and time domain. Robust control is focused on model uncertainties such as modeling error, system parameter variations, and disturbances. Robust control design problems are discussed according to parameter uncertainty, polytopic uncertainty, and norm-bounded uncertainty. Nowadays, robust control theory is combined with various control theory such as model predictive control, adaptive control, intelligent control, and time delay control.

Backbone assignment of the anticodon binding domain of human Glycyl-tRNA synthetase

  • Mushtaq, Ameeq Ul;Cho, Hye Young;Byun, Youngjoo;Jeon, Young Ho
    • Journal of the Korean Magnetic Resonance Society
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    • v.20 no.2
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    • pp.50-55
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    • 2016
  • Backbone $^1H$, $^{13}C$ and $^{15}N$ resonance assignments are presented for the anticodon binding domain (residues 557-674) of human glycyl-tRNA synthetase (GRS). Role of the anticodon binding domain (ABD) of GRS as an anticancer ligand has recently been reported and its role in other diseases like Charcot-Marie-Tooth (CMT) and polymyositis have increased its interest. NMR assignments were completed using the isotope [$^{13}C/^{15}N$]-enriched protein and chemical shifts based secondary structure analysis with TALOS+ demonstrate similar secondary structure as reported in X-ray structure PDB 2ZT8, except some C-terminal residues. NMR signals from the N-terminal residues 557 to 571 and 590 to 614 showed very weak or no signals exhibiting dynamics or conformational exchange in NMR timescale.

A Digital Signal Processing System for Analysis of Skeletal Muscle EMG Signal (골격근의 근전도 신호 분석을 위하 디지탈 신호처리 시스템의 설계)

  • 전철완
    • Journal of Biomedical Engineering Research
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    • v.17 no.2
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    • pp.155-164
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    • 1996
  • In the clinical environment, measurements of some characteristics of the skeletal muscle are currently used to assess the severity of a neuromuscular disease or in some cases to assist in making a diagnosis. But a quantitative method of evaluation has not yet been introduced satisfactorily. In this paper, the skeletal EMG(biceps muscle, masseter muscle) analysis has been processed both in the time and in the frequency domain by designing the digital signal processing system based on pentium PC and transputer (IMS 7805). The experiment have been performed in five normal subjects, and various parameters have been statistically tested and compare4 As a results, the effective parameters obtained for the evaluation of skeletal EMG electrical activity are turn analysis, MiTi, MiTa, IEMG, PDF in the time domain, and are mean frequency, median frequency, skewness, kurtosis, muscle fatigue slope in the frequency domain. The designed H/W and S/W in this study can be used effectively for the establishment of EMG data base and for clinical research.

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The relation between optical diffraction pattern and domain size in blue phase

  • Lee, Ho-Hyun;Kim, Jong-Hyun;Kikuchi, H.
    • 한국정보디스플레이학회:학술대회논문집
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    • 2009.10a
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    • pp.942-944
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    • 2009
  • Blue phase shows several different reflection colors from the randomly oriented domains and crystal direction. Also there are variations in the size of domains. The domain size is dependent on the temperature gradient. With smaller cooling rate of temperature, the domain size was increased compared with rapid cooling. With injection of light of specific wavelength, we find that the diffraction patterns were occurred around the light spot in the cell of blue phase. It was supposed to be from the matching of the phase retardation and domain size. However, actually the diffraction pattern is reflecting the lattice structure in double twist of the blue phase. The lattice constant from the radius of diffraction patterns shows very similar one from the reflection spectrum, which indicates the internal lattice constant in double twist of the blues phase.

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Evaluation of J-integrals by Finite Element Model Based on EDI Method (EDI방법에 의한 유한요소모델의 J-적분값 산정)

  • 신성진;홍종현;우광성
    • Proceedings of the Computational Structural Engineering Institute Conference
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    • 1996.04a
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    • pp.62-69
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    • 1996
  • In this study, an equivalent domain integral (EDI) method is presented to estimate the track-till integral parameter, J-value, for two dimensional cracked elastic bodies which may quantify the severity of the crack-tit) stress fields. The conventional J-integral method based on line integral has been converted to equivalent area or domain integrals by using the divergence theorem. It is noted that the EDI method is very attractive because all the quantities necessary for computation of the domain integrals are readily available in a finite element analysis. The details and its implementation are extened to both h-version finite element model with 8-node isoparametric element and p-version finite element model with high order hierarchic element using Legendre type shape fuctions. The variations with respect to the different path of domain integrals from the crack-tip front and the choice of 5-function have been tested by several examples.

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Study on the Surface Magnetic Domain Structure of Thin-Gauged 3% Si-Fe Strips using Scanning Electron Microscopy with Polarization Analysis

  • Chai, K.H.;Heo, N.-H.;Na, J.g.;Lee, S.R.;Woo, j.s.
    • Journal of Magnetics
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    • v.3 no.2
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    • pp.44-48
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    • 1998
  • Scanning Electron Microscopy with Polarization Analysis (SEMPA) was used to image the surface magnetic domain structure of the 100 ${\mu}{\textrm}{m}$ thick 3% Si-Fe sheet. The thin-gauged 3% Si-Fe strips with magnetic induction ($B_{10}$) from 1.98 to 1.57 Tesla were prepared via conventional metallurgical processes including melting, hot-and cold-rolling, intermediate annealing and final annealing. Using SEMPA, it was observed that the $B_{10}$ (1.98 T) Tesla sample was almost composed of 180$^{\circ}$ stripe domains which are parallel to rolling direction. On the other hand the 3% Si-Fe sheet with $B_{10}$ (1.57 T) Tesla was composed of large 180$^{\circ}$stripe domains that are slanted about 30$^{\circ}$to the rolling direction and complex magnetic domain structures like tree and zigzag pattern. The 180$^{\circ}$stripe domains, which covered a major part of the sample, had (110)<001> Goss texture parallel to the rolling direction. The domain walls between 180$^{\circ}$stripe domains were the conventional Bloch type walls. On the other hand, the 90$^{\circ}$domains, which covered minor part on edge of the sample, were observed in (200) grains. The domain walls between 90$^{\circ}$domains were the Neel type walls. In high magnification, the elliptical singularity at the Neel walls was clearly observed.

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Electrical transport characteristics of deoxyribonucleic acid conjugated graphene field-effect transistors

  • Hwang, J.S.;Kim, H.T.;Lee, J.H.;Whang, D.;Hwang, S.W.
    • Proceedings of the Korean Vacuum Society Conference
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    • 2011.02a
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    • pp.482-483
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    • 2011
  • Graphene is a good candidate for the future nano-electronic materials because it has excellent conductivity, mobility, transparency, flexibility and others. Until now, most graphene researches are focused on the nano electronic device applications, however, biological application of graphene has been relatively less reported. We have fabricated a deoxyribonucleic acid (DNA) conjugated graphene field-effect transistor (FET) and measured the electrical transport characteristics. We have used graphene sheets grown on Ni substrates by chemical vapour deposition. The Raman spectra of graphene sheets indicate high quality and only a few number of layers. The synthesized graphene is transferred on top of the substrate with pre-patterned electrodes by the floating-and-scooping method [1]. Then we applied adhesive tapes on the surface of the graphene to define graphene flakes of a few micron sizes near the electrodes. The current-voltage characteristic of the graphene layer before stripping shows linear zero gate bias conductance and no gate operation. After stripping, the zero gate bias conductance of the device is reduced and clear gate operation is observed. The change of FET characteristics before and after stripping is due to the formation of a micron size graphene flake. After combined with 30 base pairs single-stranded poly(dT) DNA molecules, the conductance and gate operation of the graphene flake FETs become slightly smaller than that of the pristine ones. It is considered that DNA is to be stably binding to the graphene layer due to the ${\pi}-{\pi}$ stacking interaction between nucleic bases and the surface of graphene. And this binding can modulate the electrical transport properties of graphene FETs. We also calculate the field-effect mobility of pristine and DNA conjugated graphene FET devices.

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A Study on Sensitivity of Heavy Precipitation to Domain Size with a Regional Numerical Weather Prediction Model (지역예측모델 영역 크기에 따른 집중호우 수치모의 민감도 실험)

  • Min, Jae-Sik;Roh, Joon-Woo;Jee, Joon-Bum;Kim, Sangil
    • Atmosphere
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    • v.26 no.1
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    • pp.85-95
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    • 2016
  • In this study, we investigated the variabilities of wind speed of 850 hPa and precipitable water over the East Asia region using the NCEP Final Analysis data from December 2001 to November 2011. A large variance of wind speed was observed in northern and eastern China during the winter period. During summer, the regions of the East China Sea, the South Sea of Japan and the East Sea show large variances in the wind speed caused by an extended North Pacific High and typhoon activities. The large variances in the wind speed in the regions are shown to be correlated with the inter-annual variability of precipitable water over the inland region of windward side of the Korean Peninsula. Based on the investigation, sensitivity tests to the domain size were performed using the WRF model version 3.6 for heavy precipitation events over the Korean Peninsula for 26 and 27 July 2011. Numerical experiments of different domain sizes were set up with 5 km horizontal and 50 levels vertical resolutions for the control and the first experimental run, and 9 km horizontal for the second experimental run. We found that the major rainfalls correspond to shortwave troughs with baroclinic structure over Northeast China and extended North Pacific High. The correlation analysis between the observation and experiments for 1-h precipitation indicated that the second experiment with the largest domain had the best performance with the correlation coefficient of 0.79 due to the synoptic-scale systems such as short-wave troughs and North Pacific High.