• Title/Summary/Keyword: Chromosome Number

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Plant genome analysis using flow cytometry

  • Lee Jai-Heon;Kim Kee-Young;Chung Dae-Soo;Chung Won Bok;Kwon Oh-Chang
    • Proceedings of the Korean Society of Crop Science Conference
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    • 1999.05a
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    • pp.162-163
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    • 1999
  • The goal of this research was (1) to describe the conditions and parameters required for the cell cycle synchronization and the accumulation of large number of metaphase cells in maize and other cereal root tips, (2) to isolate intact metaphase chromosomes from root tips suitable for characterization by flow cytometry, and (3) to construct chromosome-specific libraries from maize. Plant metaphase chromosomes have been successfully synchronized and isolated from many cereal root-tips. DNA synthesis inhibitor (hydroxyurea) was used to synchronize cell cycle, follwed by treatement with trifluralin to accumulate metaphase chromosomes. Maize flow karyotypes show substantial variation among inbred lines. thish variation should be sueful in isolating individual chromosome types. In addition, flow cytometry is a useful method to measure DNA content of individual chromosomes in a genotyps, and to detect chromosomal variations. Individual chromosome peaks have been sorted from the maize hybrid B73/Mol7. Libraries were generated form the DOP-PCR amplification product from each peak. To date, we have analyzed clones from a library constructed from the maize chromosome 1 peak. Hybridization of labeled genomic DNA to clone inserts indicated that $24\%,\;18\%,\;and\;58\%$ of the clones were highly repetitive, medium repetitive, and low copy, respectively. Fifty percent of putative low cpoy clones showed single bands on inbred screening, blots, and the remaining $50\%$ were low copy repeats. Single copy clones showing polymorphism will be mapped using recombinant inbred mapping populations. Repetitive clones are being characterized by Southern blot analysis, and will be screened by in situ hybridization for their potential utility as chromosome specific markers.

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Chromosome numbers on the Korean species of Senecio L. and two related genera (Asteraceae) (한국산 금방망이속(Senecio L.)과 근연분류군(국화과)의 체세포 염색체수)

  • Chang, Chin;Chung, Gyu Young
    • Korean Journal of Plant Taxonomy
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    • v.41 no.2
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    • pp.113-118
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    • 2011
  • The somatic chromosome numbers of the Korean species of Senecio L. and two related genera are investigated here. Three different chromosome numbers were found: 2n = 40 in Senecio argunensis Turcz., S. nemorensis L., S. vulgaris L., Tephroseris flammea (DC.) Holub and 2n = 44 in T. phaeantha (Nakai) C. Jeffrey & Y.L. Chen. and 2n = 48 in Sinosenecio koreanus (Kom.) B. Nord., T. kirilowii (Turcz. ex DC.) Holub and T. pierotii (Miq.) Holub. The chromosome numbers of Sinosenecio koreanus (Kom.) B. Nord., Tephroseris flammea (DC.) Holub and T. phaeantha (Nakai) C. Jeffrey & Y.L. Chen. were different from those in previous reports.

Modeling of Nonlinear SBR Process for Nitrogen Removal via GA-based Polynomial Neural Network (유전자 알고리즘 기반 다항식 뉴럴네트워크를 이용한 비선형 질소제거 SBR 공정의 모델링)

  • 김동원;박장현;이호식;박영환;박귀태
    • Journal of Institute of Control, Robotics and Systems
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    • v.10 no.3
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    • pp.280-285
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    • 2004
  • This paper is concerned with the modeling and identification of sequencing batch reactor (SBR) via genetic algorithm based polynomial neural network (GA-based PNN). The model describes a biological SBR used in the wastewater treatment process fur nitrogen removal. A conventional polynomial neural network (PNN) is applied to construct a predictive model of SBR process fur nitrogen removal before. But the performances of PNN depend strongly on the number of input variables available to the model, the number of input variables and type (order) of the polynomials to each node. They must be fixed by the designer in advance before the architecture is constructed. So the trial and error method must go with heavy computation burden and low efficiency. To alleviate these problems, we propose GA-based PNN. The order of the polynomial, the number of input variables, and the optimum input variables are encoded as a chromosome and fitness of each chromosome is computed. Simulation results have shown that the complex SBR process can be modeled reasonably well by the present scheme with a much simpler structure compared with the conventional PNN model.

Karyotype Analysis of Liobagrus somjinensis, an Endemic Species in Korea (한국 고유종 섬진자가사리 Liobagrus somjinensis의 핵형 분석)

  • Cho, Yun Jeong;Park, Jong Young
    • Korean Journal of Ichthyology
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    • v.28 no.3
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    • pp.175-178
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    • 2016
  • The karyotype analysis of Liobagrus somjinensis, an endemic Korean freshwater fish with restricted waters and a new species of torrent catfish was carried out from nine females and eight males of Somjingang River, Sikjeong-dong, Namwon-si, Jeollabuk-do, Korea. The diploid number of chromosomes was 42, and its karyotype was composed of 28 metacentrics and 14 submetacentrics; 84 FN (fundamental number). Polyploidy and sex dimorphism were not observed in the present species. The chromosome number of L. somjinensis was the same as its congeners, but there was a difference in karyotypes.

Karyotype Analysis of an Endemic Korean Torrent Catfish Liobagrus hyeongsanensis(Siluriformes: Amblycipitidae) (한국 퉁가리속 고유종 동방자가사리 Liobagrus hyeongsanensis의 핵형 분석)

  • Cho, Yun Jeong;Park, Jong Young
    • Korean Journal of Ichthyology
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    • v.29 no.2
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    • pp.89-93
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    • 2017
  • For the karyotype analysis of Liobagrus hyeongsanensis, an endemic Korean torrent catfish, ten females and five males were used from Yangbuk-myeon, Gyeongju-si, Gyeongsangbukdo, Korea. The diploid number of chromosomes was 42, and its karyotype consisted of 30 metacentrics and 12 submetacentrics; 84 FN (fundamental number), with having no polyploidy and sexual dimorphism. The chromosome number was the same as other closely-related species, L. mediadiposalis and L. somjinensis, but their karyotypes showed a clear difference by species. Such result may be related to chromosomal rearrangements by Robertsonian rearrangement with geographical isolation.

The Genetic Variation of Pinus densiflora and Pinus thunbergii by Giemsa C-banding (소나무 및 곰솔의 염색체(染色體) C-분염(分染)에 의한 유전변이(遺傳變異))

  • Park, Sang Jun;Son, Doo Sik
    • Journal of Korean Society of Forest Science
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    • v.80 no.4
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    • pp.383-392
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    • 1991
  • The genetic variation of Pinus densiflora and Pinus thunbergii by Giemsa C-banding was investigated and the results were as follows : 1. From Karyotype analysis of P. densiflora and P. thunbergii by Giemsa C-banding, somatic chromosome numbers of both species were 2n=24. 2. Chromosome of P. densiflora was M-type in arm ratio and they were no variation among individuals but variation in number and position of the secondary constriction and telomere banding among individuals. 3. P. thunbergii showed also M-type in arm ratio of chromosome, however, there was no variation in both number and position of the secondary constriction among individuals. 4. From chromosome C-banding, bands were appeared in the position of centromere and the secondary constriction in both P. densiflora and P. thunbergii. 5. In P. densiflora, the bands were shown on the secondary-constriction in chromosome No. 3, 4 and 7 of all individuals and the bands of the secondary constriction in chromosome No. 1, 2 and 5 showed variation among individuals. In chromosome No. 9, 10 and 11, the bands were shown in telomere and showed variation among individuals. 6. In P. thunbergii, the bands were shown on the secondary constriction in chromosome No. 2, 3, 7 and 8, and were shown no variation among individuals. There was no band on telomere. 7. The genetic variation by C-banding were shown in P. densiflora among individuals but no in P. thunbergii, and were shown on the secondary constriction in chromosome No. 4 of Pinus densiflora and in clnromosome No. 8 of Pinus thunbergii. These are the difference between the two species by C-banding.

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Cytogenetic Analysis of Korean Shinner, Coreoleuciscus splendidus (Cyprinidae) (쉬리, Coreoleuciscus splendidus (Cyprinidae)의 세포유전학적 연구)

  • Kim, Dong-Soo;Song, Ha-Yeun;Bang, In-Chul;Nam, Yoon-Kwon
    • Journal of Aquaculture
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    • v.20 no.2
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    • pp.140-143
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    • 2007
  • Cytogenetic analyses of an endemic species, Coreoleuciscus splendidus (Cyprinidae) was performed including erythrocyte measurement, chromosome count and karyotyping, nucleolar organizing region (NOR) banding and flow cytometric analysis of genome size. C. splendidus had the same modal chromosome number of 2n = 48 between sexes, however, displayed a sex-related dimorphism in their chromosome karyotypes. Males represented a pair of heteromorphic chromosomes which couldn‘t be seen in any female individuals, indicating that the sex determination mechanism of this species should be a typical XX-XY based male heterogamety (female=10M+6SM+8A+XX vs male=10M+6SM+8A+XY). Other cytogenetic features such as Ag-NORs located in a pair of acrocentric chromosomes, estimated nuclear volume ($28{\mu}m^3$) and cellular DNA content (2.4 pg/cell) suggest that genetic recombination might be the main driving force responsible for the evolution of this species rather than the polyploidy-based evolutionary process as in many other Cyprinidae species.

A Cytotaxonamical study of Rubus (Rosaceae) in Korea (한국산 산딸기속(Rubus)의 세포분류학적 연구)

  • Yang, Ji Young;Pak, Jae-Hong
    • Korean Journal of Plant Taxonomy
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    • v.35 no.2
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    • pp.129-142
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    • 2005
  • Somatic chromosome numbers of 19 taxa of Korean Rubus was investigated. Subg. Anoplobatus (2 species), subg. Cylactis (1 species), subg. Idaeobatus (15 taxa) and subg. Malachobatus (1 species) are found in Korea. All taxa belonging to subg. Idaeobatus except for R. parvifolius which shows tetrapolid and hexaploid are diploid. The basic chromosome number of the genus was x=7. New chromosome numbers for 5 taxa were reported here: R. hongnoensis of Jeju-island endemic species, 2n=14; R. longisepalus, 2n=14; R. longisepalus var. tozawai, 2n=14; R. parvifolius, 2n=28; R. parvifolius var. taquetii, 2n=28. The rest 12 taxa except for R. coreanus Miq was well counted as 2n=14 and well consistent with previous reports from China and Japan. Our new chromosome level for R. parvifolius as 6x may indicate that speciation by polyploidization has occurred within Korean population. Unlikely to Japanese population (2n=42), Korean population of R. buergeri has same ploidy level with Taiwanese population as 2n=56.

Taxonomic reconsideration of Lactuca hallaisanensis H. Lév. (한라고들빼기 (Lactuca hallaisanensis H. Lév.)의 분류학적 재고)

  • Pak, Jae-Hong;Kim, Young-Ok;Choi, Kyung
    • Korean Journal of Plant Taxonomy
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    • v.31 no.4
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    • pp.311-319
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    • 2001
  • In order to evaluate taxonomic status of Latcuca hallaisanensis H. $L{\acute{e}}v$., an endemic species of the Jeju-do Island, we investigated fruit wall structure and chromosome morphology. The fruit wall structure had 10-11 obtuse costae in the transverse section. The costa was wholly occupied by libriform fiber cells, and the underlying fibersclereid tissue was only one to three cells layers thick. Also, the intercosta lacked fiber-sclereid layers. Somatic chromosome numbers and karyotype of Latcuca hallaisanensis were recorded for the first time. This diploid species (2n=10) with the same basic number of x=5 has the total chromosome length $23.3{\mu}m$ and the length of each chromosome falls in $1.9{\mu}m-2.9{\mu}m$. It possess the karyotype complement i.e., 3sm+2st and a characteristic chromosome pair (No. 1 and 2) with a secondary constriction at the distal portion of the short arms. The overall similarity in external morphology (involucre, achene etc), chromosome morphology as well as in fruit wall anatomy between Lactuca hallaisanensis and Crepidiastrum s. lat. clearly indicated that this species should be treated as Crepidiastrum, rather than Lactuca.

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Variation in Chromosome Number in Early Generation from Cross between Hexaploid Triticale(X Triticosecale Wittmack) and Wheat (Triticum aestivum L.) (6배체 트리티케일X밀 잡종 초기 세대의 염색체수 변이)

  • 황종진;이홍석
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.36 no.4
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    • pp.310-318
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    • 1991
  • This experiment was carried out to obtain the information on the variation of chromosome number in pollen mother cell (PMC) and somatic cell of the progeny from the cross between hexaploid triticale cv. Sinkihomil and five hexaploid wheat varieties. The results were summarized as follows: Number of uni-, bi- and tri-valent in PMC was 11.9, 14.4 and 0.44, respectively, in the F$_1$ between triticale and wheat. Significant positive correlation between the pollen fertility and seed set rate, pollen fertility and bivalent number of PMC, and seed set rate and bivalent number of PMC, and negative correlation between pollen fertility and uni-or tri-valent of PMC in the cross between triticale and wheat were detected. F$_1$ (crossed seed) had 42 chromosomes, F$_2$ and F$_1$/P$_1$ showed high frequency of hyperploid (42-49) and F$_1$/P$_2$ showed high frequency of hypoploid (36- 42), which suggest non-random segregation for somatic chromosome number. in the cross between the triticale and wheat.

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