• Title/Summary/Keyword: state transitions

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Hot stage microscopy and its applications in pharmaceutical characterization

  • Arun Kumar;Pritam Singh;Arun Nanda
    • Applied Microscopy
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    • v.50
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    • pp.12.1-12.11
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    • 2020
  • Hot stage microscopy (HSM) is a thermal analysis technique that combines the best properties of thermal analysis and microscopy. HSM is rapidly gaining interest in pharmaceuticals as well as in other fields as a regular characterization technique. In pharmaceuticals HSM is used to support differential scanning calorimetry (DSC) and thermo-gravimetric analysis (TGA) observations and to detect small changes in the sample that may be missed by DSC and TGA during a thermal experiment. Study of various physical and chemical properties such sample morphology, crystalline nature, polymorphism, desolvation, miscibility, melting, solid state transitions and incompatibility between various pharmaceutical compounds can be carried out using HSM. HSM is also widely used to screen cocrystals, excipients and polymers for solid dispersions. With the advancements in research methodologies, it is now possible to use HSM in conjunction with other characterization techniques such as Fourier transform infrared spectroscopy (FTIR), DSC, Raman spectroscopy, scanning electron microscopy (SEM) which may have additional benefits over traditional characterization techniques for rapid and comprehensive solid state characterization.

Detecting DNA hydroxymethylation: exploring its role in genome regulation

  • Sun-Min Lee
    • BMB Reports
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    • v.57 no.3
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    • pp.135-142
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    • 2024
  • DNA methylation is one of the most extensively studied epigenetic regulatory mechanisms, known to play crucial roles in various organisms. It has been implicated in the regulation of gene expression and chromatin changes, ranging from global alterations during cell state transitions to locus-specific modifications. 5-hydroxymethylcytosine (5hmC) is produced by a major oxidation, from 5-methylcytosine (5mC), catalyzed by the ten-eleven translocation (TET) enzymes, and is gradually being recognized for its significant role in genome regulation. With the development of state-of-the-art experimental techniques, it has become possible to detect and distinguish 5mC and 5hmC at base resolution. Various techniques have evolved, encompassing chemical and enzymatic approaches, as well as third-generation sequencing techniques. These advancements have paved the way for a thorough exploration of the role of 5hmC across a diverse array of cell types, from embryonic stem cells (ESCs) to various differentiated cells. This review aims to comprehensively report on recent techniques and discuss the emerging roles of 5hmC.

Structural and Luminescent Properties of Gd2WO6:RE3+ (RE = Dy, Sm, Dy/Sm) Phosphors for White Light Emitting Devices (백색광 소자 응용을 위한 Gd2WO6:RE3+ (RE = Dy, Sm, Dy/Sm) 형광체의 구조 및 발광 특성)

  • Park, Giwon;Jung, Jaeyong;Cho, Shinho
    • Journal of the Korean institute of surface engineering
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    • v.53 no.4
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    • pp.131-137
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    • 2020
  • A series of Dy3+, Sm3+, and Dy3+/Sm3+ doped Gd2WO6 phosphors were synthesized by the conventional solid-state reaction. The X-ray diffraction patterns revealed that all of the diffraction peaks could be attributed to the monoclinic Gd2WO6 crystal structure, irrespective of the type and the concentration of activator ions. The photoluminescence (PL) excitation spectra of Dy3+-doped Gd2WO6 phosphors contained an intense charge transfer band centered at 302 nm in the range of 240-340 nm and two weak peaks at 351 and 386 nm. Under an excitation wavelength of 302 nm, the PL emission spectra consisted of two strong blue and yellow bands centered at 482 nm and 577 nm. The PL emission spectra of the Sm3+-doped Gd2WO6 phosphors had a series of three peaks centered at 568 nm, 613 nm, and 649 nm, corresponding to the 6G5/26H5/2, 6G5/26H9/2, and 6G5/26H11/2 transitions of Sm3+, respectively. The PL emission spectra of the Dy3+- and Sm3+-codoped Gd2WO6 phosphors showed the blue and yellow emission lines originating from the 4F9/26H15/2 and 4F9/24H13/2 transitions of Dy3+ and reddish-orange and red emission bands due to the 4G5/26H7/2 and 4G5/26H9/2 transitions of Sm3+. As the concentration of Sm3+ increased from 1 to 15 mol%, the intensities of two PL spectra emitted by the Dy3+ ions gradually decreased, while those of the three emission bands due to the Sm3+ ions slowly increased, thus producing the color change from white to orange. The CIE color coordinates of Gd2WO6:5 mol% Dy3+, 1 mol% Sm3+ phosphors were (0.406, 0.407), which was located in the warm white light region.

Synthesis and Emission Properties of Dy3+-doped BaMoO4 Phosphors (Dy3+ 이온이 도핑된 BaMoO4 형광체의 합성과 발광 특성)

  • Cho, Shinho
    • Journal of the Korean Vacuum Society
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    • v.22 no.4
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    • pp.181-187
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    • 2013
  • $Dy^{3+}$-doped $BaMoO_4$ phosphor powders were synthesized by using the solid-state reaction method and their crystalline structure, morphology and size of particles, excitation and emission properties were investigated. The structure of all the phosphor powders, irrespective of the mol ratio of $Dy^{3+}$ ions, was found to be the tetragonal system with the main diffraction peak at (112) plane. The grain particles agglomerate together to form larger clusters with increasing the mol ratio of $Dy^{3+}$ ions. The excitation spectra were composed of a broad band centered at 293 nm and weak multiline peaked in the range of 230~320 nm, which were due to the transitions of $Dy^{3+}$ ions. The emission of the phosphors peaking at 666 and 754 nm, originating from the transitions of $^4F_{9/2}{\rightarrow}^6H_{11/2}$ and $^4F_{9/2}{\rightarrow}^6H_{9/2}$ of $Dy^{3+}$ ions, was rather weak, while the intensity of blue and yellow emission peaking at 486 nm and 577 nm due to the transitions of $^4F_{9/2}{\rightarrow}^6H_{15/2}$ and $^4F_{9/2}{\rightarrow}^6H_{13/2}$ of $Dy^{3+}$ ions was significantly stronger. The experimental results suggest that the white-light emission can be realized by controlling the yellow-to-blue intensity ratio of $Dy^{3+}$ emission.

Comparison between Parametric and Semi-parametric Cox Models in Modeling Transition Rates of a Multi-state Model: Application in Patients with Gastric Cancer Undergoing Surgery at the Iran Cancer Institute

  • Zare, Ali;Mahmoodi, Mahmood;Mohammad, Kazem;Zeraati, Hojjat;Hosseini, Mostafa;Naieni, Kourosh Holakouie
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.11
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    • pp.6751-6755
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    • 2013
  • Background: Research on cancers with a high rate of mortality such as those occurring in the stomach requires using models which can provide a closer examination of disease processes and provide researchers with more accurate data. Various models have been designed based on this issue and the present study aimed at evaluating such models. Materials and Methods: Data from 330 patients with gastric cancer undergoing surgery at Iran Cancer Institute from 1995 to 1999 were analyzed. Cox-Snell Residuals and Akaike Information Criterion were used to compare parametric and semi-parametric Cox models in modeling transition rates among different states of a multi-state model. R 2.15.1 software was used for all data analyses. Results: Analysis of Cox-Snell Residuals and Akaike Information Criterion for all probable transitions among different states revealed that parametric models represented a better fitness. Log-logistic, Gompertz and Log-normal models were good choices for modeling transition rate for relapse hazard (state $1{\rightarrow}state$ 2), death hazard without a relapse (state $1{\rightarrow}state$ 3) and death hazard with a relapse (state $2{\rightarrow}state$ 3), respectively. Conclusions: Although the semi-parametric Cox model is often used by most cancer researchers in modeling transition rates of multistate models, parametric models in similar situations- as they do not need proportional hazards assumption and consider a specific statistical distribution for time to occurrence of next state in case this assumption is not made - are more credible alternatives.

State-Based Behavior Modeling in Software and Systems Engineering

  • Sabah Al-Fedaghi
    • International Journal of Computer Science & Network Security
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    • v.23 no.5
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    • pp.21-32
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    • 2023
  • The design of complex man-made systems mostly involves a conceptual modeling phase; therefore, it is important to ensure an appropriate analysis method for these models. A key concept for such analysis is the development of a diagramming technique (e.g., UML) because diagrams can describe entities and processes and emphasize important aspects of the systems being described. The analysis also includes an examination of ontological concepts such as states and events, which are used as a basis for the modeling process. Studying fundamental concepts allows us to understand more deeply the relationship between these concepts and modeling frameworks. In this paper, we critically analyze the classic definition of a state utilizing the Thinging machine (TM) model. States in state machine diagrams are considered the appropriate basis for modeling system behavioral aspects. Despite its wide application in hardware design, the integration of a state machine model into a software system's modeling requirements increased the difficulty of graphical representation (e.g., integration between structural and behavioral diagrams). To understand such a problem, in this paper, we project (create an equivalent representation of) states in TM machines. As a case study, we re-modeled a state machine of an assembly line system in a TM. Additionally, we added possible triggers (transitions) of the given states to the TM representation. The outcome is a complicated picture of assembly line behavior. Therefore, as an alternative solution, we re-modeled the assembly line based solely on the TM. This new model presents a clear contrast between state-based modeling of assembly line behavior and the TM approach. The TM modeling seems more systematic than its counterpart, the state machine, and its notions are well defined. In a TM, states are just compound events. A model of a more complex system than the one in the assembly line has strengthened such a conclusion.

Performance Analysis of Wireless Communication System with FSMC Model in Nakagami-m Fading Channel (Nakagami-m 페이딩 채널에서 FSMC 모델에 의한 무선 통신시스템의 성능 분석)

  • 조용범;노재성;조성준
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.8 no.5
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    • pp.1010-1019
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    • 2004
  • In this paper, we represent Nakagami-m fading channel as finite-State Markov Channel (FSMC) and analyze the performance of wireless communication system with varying the fading channel condition. In FSMC model, the received signal's SNR is divided into finite intervals and these intervals are formed into Markov chain states. Each state is modeled by a BSC and the transition probability is dependent upon the physical characterization of the channel. The steady state probability and average symbol error rate of each state and transition probability are derived by numerical analysis and FSMC model is formed with these values. We found that various fading channels can be represented with FSMC by changing state transition index. In fast fading environment in which state transition index is large, the channel can be viewed as i.i.d. channel and on the contrary, in slow fading channel where state transition index is small, the channel can be represented by simple FSMC model in which transitions occur between just adjacent states. And we applied the proposed FSMC model to analyze the coding gain of random error correcting code on various fading channels via computer simulation.

Scen based MPEG video traffic modeling considering the correlations between frames (프레임간 상관관계를 고려한 장면기반 MPEG 비디오 트래픽 모델링)

  • 유상조;김성대;최재각
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.23 no.9A
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    • pp.2289-2304
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    • 1998
  • For the performance analysis and traffic control of ATM networks carrying video sequences, need an appropriate video traffic model. In this paper, we propose a new traffic model for MPEG compressed videos which are widely used for any type of video applications at th emoment. The proposed modeling scheme uses scene-based traffic characteristics and considers the correlation between frames of consecutiv GOPs. Using a simple scene detection algorithm, scene changes are modeled by state transitions and the number of GOPs of a scene state is modeled by a geometric distirbution. Frames of a scene stte are modeled by mean I, P, and B frame size. For more accurate traffic modeling, quantization errors (residual bits) that the state transition model using mean values has are compensated by autoregressive processes. We show that our model very well captures the traffic chracteristics of the original videos by performance analysis in terms of autocorrelation, histogram of frame bits genrated by the model, and cell loss rate in the ATM multiplexer with limited buffers. Our model is able to perrorm translations between levels (i.e., GOP, frame, and cell levels) and to estimate very accurately the stochastic characteristics of the original videos by each level.

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Magnetic Properties of Thin Films of a Magnetocaloric Material FeRh

  • Jekal, Soyoung;Kwon, Oryong;Hong, Soon Cheol
    • Proceedings of the Korean Magnestics Society Conference
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    • 2013.05a
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    • pp.18-18
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    • 2013
  • A FeRh alloy is a well-known efficient magnetocaloric material and some experimental and theoretical studies of bulk FeRh have been reported already by several groups. In this study we report first-principles calculations on magnetic properties of different thickness FeRh thin films in order to investigate the possibility to enhance further the magnetocaloric efficiency. We used Vienna Ab-initio Simulation Package (VASP) code. We found that the FeRh thin films have quite different magnetic properties from the bulk when the thickness is thinner than 6-atomic-layers. While bulk FeRh has a G-type antiferromagnetic (AFM) state, thin films which are thinner than 6-atomic-layers have an A-type AFM state or a ferromagnetic(FM) state. We will discuss possibility of magnetic phase transitions of the FeRh thin films in the view point of a magnetocaloric effect. And we found 4-, 5-, 6-layers films with Fe surface and 7-layers film with Rh surface are FM and they have dozens eV magnetocrystalline anisotropy (MCA) energy. MCA energy leads to determine energy barrier when magnetic states are changed by external magnetic field.

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Ultrastructure and Mrphological Fatures of Mcoplasma pneumoniae during Clture Dvelopment (Mycoplasma Pnemoniae 세포의 발달과정 중 미세구조 및 형태학적 특징)

  • Kim, Chi-Kyung;Pfister Robert M.;Somerson Norman L.
    • Korean Journal of Microbiology
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    • v.17 no.1
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    • pp.1-15
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    • 1979
  • Mycoplasma pneumoniae strain CL-s attached to broth-covered surfaces was examined sequentially during growth from single cells for morphologic and ultrastructural changes using several different electron microscopic techniques. Changes in morphology revealed both round and spindle shapes and observation of cell transitions suggested some type of morphological cycle. The round to-ovoid cells observed in the early stages of growth appeared to be viable, and morphologically and ultrastructurally different from the spherical fors which were produced during the latter stage of growth. The spindle segments were detected appeared to be structurally the same as the terminal cored structure seen in thin sections and may be a growing point or an attachment site of the cell. A tubular structure was observed in the core of the terminal structure and a microtubule-like element appeared to bridge between some spindle segments. A matrix sunstance was observed around single cells as well in the intercellular space of the colonies prepared by critical point metrical triple-layered cytoplasmic mermbranes, surfaces, of which appeared to be structurally different each other, were observed in young cells, whereas symmetrical and thicker membranes were seen in older cells. Small bodies were found in 4d or older cultures and did not appear to contain any internal structures or an easily detectable unit membrane.

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