• Proceedings of the Korea Information Processing Society Conference
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• 2003.11c
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• pp.1375-1378
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• 2003

본 논문은 Rice 60K DNA Chip의 실험데이터를 기반으로 한 데이터베이스의 구축과 XML기반 검색시스템을 설계 및 구현에 대해 설명한다. 본 시스템은 실험 데이터를 저장하기 위하여 RDBMS 를 사용하고 Chip 데이터를 검색하기 위해 XML 기반의 검색시스템을 사용한다. 이를 위해 일반 속성으로 저장될 수 있는 데이터들은 데이터베이스의 테이블의 속성 값으로 저장하고, XML 기반 검색시스템을 통해 검색할 수 있도록 한다. 그리고 BLAST내용을 기반으로 하는 데이터는 테이블을 별도로 만들어서 검색이 가능하도록 한다.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.16 no.1
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• pp.147-157
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• 2013

Rice is a main crop and rice field is the most important farmland in Korea. This study was conducted to propose the methodology assessing impact and vulnerability on rice production by climate change at the regional and national level in Korea. We evaluated a vulnerability of rice paddy according to the outbreak of a main disease and pest of a rice plant. As results, Jeju-do, Gyeongsangnam-do, and Jeollanam-do were more vulnerable area than others. In contrast, the southern central region including Gyeonggi-do was less vulnerable than others. The vulnerable index was significantly higher in 2050s (0.5589) than in present (0.3500). This result showed that the vulnerable to the disease and pest enlarge in the future. The adaptive capacity highly contributed to the vulnerability assessment index. The daily maximum temperature of June and the daily average temperature from May to August also contributed the climate exposure index. The area of occurring sheath blight, rice leaf blast and striped rice borer was related to the system sensitivity index. The ability of water supply (readjustment area of arable land per paddy field area) and rice production technique (rice yield per hectare) were the highly contributed variables to the adaption capacity index.

• Korean Journal of Environmental Agriculture
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• v.38 no.3
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• pp.185-196
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• 2019

BACKGROUND: This study investigated the effects of rice genetically modified to be resistant against rice blast and rice bacterial blight on the soil microbial community. A comparative analysis of the effects of rice genetically modified rice choline kinase (OsCK1) gene for disease resistance (GM rice) and the Nakdong parental cultivar (non-GM rice) on the soil microbial community at each stage was conducted using rhizosphere soil of the OsCK1 and Nakdong rice. METHODS AND RESULTS: The soil chemistry at each growth stage and the bacterial and fungal population densities were analyzed. Soil DNA was extracted from the samples, and the microbial community structures of the two soils were analyzed by pyrosequencing. No significant differences were observed in the soil chemistry and microbial population density between the two soils. The taxonomic analysis showed that Chloroflexi, Proteobacteria, Firmicutes, Actinobacteria, and Acidobacteria were present in all soils as the major phyla. Although the source tracking analysis per phylogenetic rank revealed that there were differences in the bacteria between the GM and non-GM soil as well as among the cultivation stages, the GM and non-GM soil were grouped according to the growth stages in the UPGMA dendrogram analysis. CONCLUSION: The difference in bacterial distributions between Nakdong and OsCK1 rice soils at each phylogenetic level detected in microbial community analysis by pyrosequencing may be due to the genetic modification done on GM rice or due to heterogeneity of the soil environment. In order to clarify this, it is necessary to analyze changes in root exudates along with the expression of transgene. A more detailed study involving additional multilateral soil analyses is required.

• Molecules and Cells
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• v.27 no.5
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• pp.563-570
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• 2009

We previously isolated the OsCBT gene, which encodes a calmodulin (CaM)-binding protein, from a rice expression library constructed from fungal elicitor-treated rice suspension cells. In order to understand the function of OsCBT in rice, we isolated and characterized a T-DNA insertion mutant allele named oscbt-1. The oscbt-1 mutant exhibits reduced levels of OsCBT transcripts and no significant morphological changes compared to wild-type plant although the growth of the mutant is stunted. However, oscbt-1 mutants showed significant resistance to two major rice pathogens. The growth of the rice blast fungus Magnaporthe grisea, as well as the bacterial pathogen Xanthomonas oryzae pv. oryzae was significantly suppressed in oscbt-1 plants. Histochemical analysis indicated that the hypersensitive-response was induced in the oscbt-1 mutant in response to compatible strains of fungal pathogens. OsCBT expression was induced upon challenge with fungal elicitor. We also observed significant increase in the level of pathogenesis-related genes in the oscbt-1 mutant even under pathogen-free condition. Taken together, the results support an idea that OsCBT might act as a negative regulator on plant defense.

• Korean Journal of Microbiology
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• v.52 no.2
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• pp.157-165
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• 2016

Under flooded rice fields, methanogens produce methane which comes out through rice stalks, thus rice fields are known as one of the anthropogenic sources of atmospheric methane. Studies have shown that use of manure increases amount of methane emission from rice. To investigate mechanisms by which manure boosts methane emission, comparative soil metagenomics between inorganically (NPK) and pig manure fertilized paddy soils (PIG) were conducted. Results from taxonomy analysis showed that more abundant methanogens, methanotrophs, methylotrophs, and acetogens were found in PIG than in NPK. In addition, BLAST results indicated more abundant carbohydrate mabolisetm functional genes in PIG. Among the methane metabolism related genes, PIG sample showed higher abundance of methyl-coenzyme M reductase (mcrB/mcrD/mcrG) and trimethylamine-corrinoid protein Co-methyltransferase (mttB) genes. In contrast, genes that down regulate methane emission, such as trimethylamine monooxygenase (tmm) and phosphoserine/homoserine phosphotransferase (thrH), were observed more in NPK sample. In addition, more methanotrophic genes (pmoB/amoB/mxaJ), were found more abundant in PIG sample. Identifying key genes related to methane emission and methane oxidation may provide fundamental information regarding to mechanisms by which use of manure boosts methane emission from rice. The study presented here characterized molecular variation in rice paddy, introduced by the use of pig manure.

• Molecules and Cells
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• v.23 no.2
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• pp.207-214
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• 2007

lant ${\beta}$-1, 3-glucanases are involved in plant defense and in development. Very little data are available on the expression of rice glucanases both in developmental tissues and under various stresses. In this study, we cloned and characterized twenty-seven rice ${\beta}$-1, 3-glucanases (OsGlu) from at total of 71 putative glucanases. The OsGlu genes were obtained by PCR from a cDNA library and were classified into seven groups (Group I to VII) according to their DNA or amino acid sequence homology. Analysis of the expression of the twenty-seven OsGlu genes by Northern blotting revealed that they were differentially expressed in different developmental tissues as well as in response to plant hormones, biotic stress, high salt etc. OsGlu11 and 27 in Group IV were clearly expressed only in stem and leaf and were also induced strongly by SA (5 mM), ABA ($200{\mu}M$), and M. grisea. OsGlu1, 10, 11, and 14 were induced earlier and to higher levels in incompatible M. grisea interaction than in compatible one. Taken together, our findings suggest that the twenty-seven rice OsGlu gene products play diverse roles not only in plant defense but also in hormonal responses and in development.

• Proceedings of the Korean Institute of Building Construction Conference
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• 2021.05a
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• pp.225-226
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• 2021

Recently, environmental problems have emerged as a major issue all over the world due to an increase in carbon dioxide(CO₂). The amount of CO₂ generated during cement production accounts for 6% to 8% of domestic CO₂ emissions and a solution to reduce CO₂ emissions the construction industry is trying to use mineral admixtures to reduce cement. Since digestion has no firing process the advantage of it is that there is no air pollution to occur. In this study, we studied the compressive strength of binary non-cement mortar containing rice husk powder extracted from digestion by the ratio of 10%, 20%, 30%, 40%. As a result, the table flow was increased when the mixing rate of rice husk powder extracted from digestion was higher, and the highest compressive strength was shown when the rice husk powder extracted from digestion mixing rate was 10%.

• Research in Plant Disease
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• v.18 no.4
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• pp.399-401
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• 2012

In order to select the optimum rice cultivars for the use in processing of eco-friendly-grown germinated brown rice (GBR), disease incidences and yields in rice cultivars bred in National Institute of Crop Science were investigated in eco-friendly paddy fields (Gokseong, Jeonnam Province, Korea) during the years 2009-2011. The incidences of rice sheath blight and blast on the cultivar Samgwang were higher than those on one reference cultivar Chucheong, but much lower than those on the other reference cultivar Gosihikkali. The cultivars Keunnun and Haiami selected as special rices showed disease incidences and yields similar to the reference rice cultivars Chucheong and Gosihikkali. These results indicated that the cultivars Samkwang, Keunnun, and Haiami can be selected as rice cultivars for the use of in processing of eco-friendly grown GBR because their disease incidences and yields in Gokseong may be similar to the reference cultivars.

• Korean Journal of Breeding Science
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• v.41 no.3
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• pp.314-318
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• 2009

A new rice cultivar "Jinbaek" carrying Xa3 and xa5 was derived from the cross between 'HR15204-38-3' with xa5 gene resistant to bacterial blight K1, K2, K3 and K3a, and F1 plant derived from the cross between Junam and Sindongjin with Xa3 gene. "Jinbaek" has approximately 125 days of growth duration from transplanting to harvesting in the west-southern coastal and Honam plain of Korea. Culm length of "Jinbaek" is 71 cm. In reaction to biotic stresses, it shows moderate resistance to blast, and wide spectrum resistance to bacterial blight pathogen, K1, K2, K3, and K3a but susceptible to rice stripe virus and blast. The milled rice of "Jinbaek" exhibits translucent, relatively clear non-glutinous endosperm and midium short grain. It has lower amylose content (18.8%) and protein content (6.2%) compared with Nampyeong. The milled rice yield of this cultivar was 5.30 MT/ha in local adaptability test of three years from 2006 to 2008. This cultivar would be adaptable to the bacterial blight-prone area in the south-western coast and Honam plain of Korea.

• Korean Journal of Breeding Science
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• v.42 no.3
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• pp.252-256
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• 2010

'Honong' is a new japonica rice variety developed and registered by the rice breeding team of Department of Rice and Winter Cereal Crop, NICS, RDA in 2009. This variety was derived from mutagen MNU (N-methyl-N-nitrosourea) treatment on fertilized egg cells of Unbong31. This variety has about 126 days growth duration from transplanting to harvesting in west-southern coast, Honam and Youngnam plain of Korea. It has 79 cm in culm length and is tolerant to lodging. In reaction to biotic and abiotic stresses, it show resistance to blast, bacterial blight pathogen races from $K_1$ to $K_3$ and stripe virus, but susceptible to other major diseases and insect pests. The milled rice of 'Honong' exhibits translucent, relatively clear non-glutinous endosperm and medium short grain. It has higher amylose content (20.3%) and lower protein content (6.3%), and good palatability of cooked rice compared with Nampyeong. The milled rice yield performance of this variety is about 5.44MT/ha in local adaptability test for three years. 'Honong' would be adaptable to west-southern coast, Honam and Youngnam plain of Korea.