• Title/Summary/Keyword: high-throughput experimentation

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Recent advances in microfluidic technologies for biochemistry and molecular biology

  • Cho, Soong-Won;Kang, Dong-Ku;Choo, Jae-Bum;Demllo, Andrew J.;Chang, Soo-Ik
    • BMB Reports
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    • v.44 no.11
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    • pp.705-712
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    • 2011
  • Advances in the fields of proteomics and genomics have necessitated the development of high-throughput screening methods (HTS) for the systematic transformation of large amounts of biological/chemical data into an organized database of knowledge. Microfluidic systems are ideally suited for high-throughput biochemical experimentation since they offer high analytical throughput, consume minute quantities of expensive biological reagents, exhibit superior sensitivity and functionality compared to traditional micro-array techniques and can be integrated within complex experimental work flows. A range of basic biochemical and molecular biological operations have been transferred to chip-based microfluidic formats over the last decade, including gene sequencing, emulsion PCR, immunoassays, electrophoresis, cell-based assays, expression cloning and macromolecule blotting. In this review, we highlight some of the recent advances in the application of microfluidics to biochemistry and molecular biology.

A Study on Performance Improvement of Adaptive AQM Using the Variation of Queue Length (큐 변화량을 이용한 적응식 AQM 성능 향상에 관한 연구)

  • Kim, Jong-Hwa;Lee, Ki-Young
    • Proceedings of the IEEK Conference
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    • 2005.11a
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    • pp.159-162
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    • 2005
  • Random Early Detection (RED), one of the most well-known Active Queue Management (AQM), has been designed to substitute Tail Drop and is nowadays widely implemented in commercially available routers. RED algorithm provides high throughput and low delay as well as a solution of global synchronization. However RED is sensitive to parameters setting, so the performance of RED, significantly depends on the fixed parameters. To solve this problem, the Adaptive RED (ARED) algorithm is suggested by S. Floyd. But, ARED also uses fixed parameters like target-queue length; it is hard to respond to bursty traffic actively. In this paper, we proposed AQM algorithm based on the variation of current queue length in order to improve adaptability about burst traffic. We measured performance of proposed algorithm through a throughput, marking-drop rate and bias phenomenon. In experimentation, we raised a packet throughput as reduced packet drop rate, and we confirmed to reduce a bias phenomenon about bursty traffic.

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The Emergence of Behavioral Testing of Fishes to Measure Toxicological Effects

  • Brooks, Janie S.
    • Toxicological Research
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    • v.25 no.1
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    • pp.9-15
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    • 2009
  • Historically, research in toxicology has utilized non-human mammalian species, particularly rats and mice, to study in vivo the effects of toxic exposure on physiology and behavior. However, ethical considerations and the overwhelming increase in the number of chemicals to be screened has led to a shift away from in vivo work. The decline in in vivo experimentation has been accompanied by an increase in alternative methods for detecting and predicting detrimental effects: in vitro experimentation and in silico modeling. Yet, these new methodologies can not replace the need for in vivo work on animal physiology and behavior. The development of new, non-mammalian model systems shows great promise in restoring our ability to use behavioral endpoints in toxicological testing. Of these systems, the zebrafish, Danio rerio, is the model organism for which we are accumulating enough knowledge in vivo, in vitro, and in silico to enable us to develop a comprehensive, high-throughput toxicology screening system.

Effect of Bi4Zr3O12 on the properties of (KxNa1-x)NbO3 based ceramics

  • Mgbemere, Henry. E.;Akano, Theddeus T.;Schneider, Gerold. A.
    • Advances in materials Research
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    • v.5 no.2
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    • pp.93-105
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    • 2016
  • KNN-based ceramics modified with small amounts of $Bi_4Zr_3O_{12}$ (BiZ) has been synthesized using high-throughput experimentation (HTE). The results from X-ray diffraction show that for samples with base composition $(K_{0.5}Na_{0.5})NbO_3$ (KNN), the phase present changes from orthorhombic to pseudo-cubic with more than 0.2 mol% BiZ addition; for samples with base composition $(K_{0.48}Na_{0.48}Li_{0.04})(Nb_{0.9}Ta_{0.1})O_3$ (KNNLT), the phase present changes from a mixture of orthorhombic and tetragonal symmetry to pseudo-cubic with more than 0.4 mol % while for samples with base composition $(K_{0.48}Na_{0.48}Li_{0.04})(Nb_{0.86}Ta_{0.1}Sb_{0.04})O_3$ (KNNLST), the phase present is tetragonal with <0.3 mol% BiZ addition and transforms to pseudo-cubic with more dopant addition. The microstructures of the samples show that addition of BiZ decreases the average grain size and increases the volume of pores at the grain boundaries. The values of dielectric constant for KNN and KNNLT compositions increase slightly with BiZ addition while that for KNNLST decreases gradually with BiZ addition. The dielectric loss values are between 0.02 and 0.04 for KNNLT and KNNLST compositions while they are ~ 0.05 for KNN samples. The resistivity values increases with BiZ addition and values in the range of $10^{10}{\Omega}cm$ and $10^{12}{\Omega}cm$ are obtained. The piezoelectric charge coefficient ($d{^*}_{33}$) is highest for KNNLST samples and decreases gradually from ~400 pm/V to ~100 pm/V with BiZ addition.

Experimentation and Analysis of SCTP Throughput by MuIti-homing (멀티홈잉 기반 SCTP 성능 실험 및 비교 분석)

  • Koh Seok-Joo;Ha Jong-Shik
    • The KIPS Transactions:PartC
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    • v.13C no.2 s.105
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    • pp.235-240
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    • 2006
  • Stream Control Transmission Protocol (SCTP) provides the multi-homing feature, which allows each SCTP endpoint to use two or more IP addresses for data transmission. In this paper, the SCTP multi-homing feature is experimented and analyzed in terms of throughput over Linux platforms based on the NISTNET network emulator. We perform the experimental analysis of SCTP throughputs by SCTP multi-homing for the various network conditions: different packet loss rates, network bandwidths, and transmission delays. From the experimental results, it is shown that the SCTP multi-homing gives much better throughout gun over the SCTP single-homing case in the networks with a high packet loss rate. In the meantime, the other factors including network bandwidth and transmission delay do not seem to give a significant impact on the performance of the SCTP multi-homing.

Faster Than Nyquist Transmission Method for Throughput Improvement in Underwater Communication (수중 통신에서 전송률 향상을 위한 Faster Than Nyquist 전송기법 연구)

  • Baek, Chang-uk;Jung, Ji-won
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.20 no.9
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    • pp.1688-1695
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    • 2016
  • Underwater communication has multipath error because of reflection by sea-level and sea-bottom. The multipath of underwater channel causes signal distortion and error floor. The excessive multipath encountered in underwater communication channel creates inter symbol interference, which is a limiting factor to achieve a high data rate and bit error rate performance. Therefore, to increase throughput efficiency and improve performance, this paper consider FTN (Faster-than-Nyquist) signalling based on turbo equalization. FTN signalling is a technique of transmitting information at a rate higher than the allowed Nyquist limit. This paper presented efficient decoder structure of FTN transmission in the environment of multipath underwater channel and we compare the performance between FTN method and conventional punctured method in lake experimentation. As a results of lake experiment, we confirmed FTN method based on turbo equalization is applicable and efficiency in underwater communication.

Analysis of the CPU/GPU Temperature and Energy Efficiency depending on Executed Applications (응용프로그램 실행에 따른 CPU/GPU의 온도 및 컴퓨터 시스템의 에너지 효율성 분석)

  • Choi, Hong-Jun;Kang, Seung-Gu;Kim, Jong-Myon;Kim, Cheol-Hong
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.5
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    • pp.9-19
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    • 2012
  • As the clock frequency increases, CPU performance improves continuously. However, power and thermal problems in the CPU become more serious as the clock frequency increases. For this reason, utilizing the GPU to reduce the workload of the CPU becomes one of the most popular methods in recent high-performance computer systems. The GPU is a specialized processor originally designed for graphics processing. Recently, the technologies such as CUDA which utilize the GPU resources more easily become popular, leading to the improved performance of the computer system by utilizing the CPU and GPU simultaneously in executing various kinds of applications. In this work, we analyze the temperature and the energy efficiency of the computer system where the CPU and the GPU are utilized simultaneously, to figure out the possible problems in upcoming high-performance computer systems. According to our experimentation results, the temperature of both CPU and GPU increase when the application is executed on the GPU. When the application is executed on the CPU, CPU temperature increases whereas GPU temperature remains unchanged. The computer system shows better energy efficiency by utilizing the GPU compared to the CPU, because the throughput of the GPU is much higher than that of the CPU. However, the temperature of the system tends to be increased more easily when the application is executed on the GPU, because the GPU consumes more power than the CPU.