• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.3 no.2
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• pp.67-72
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• 2022

Ecological research relies on the interpretation of large amounts of visual data obtained from extensive wildlife surveys, but such large-scale image interpretation is costly and time-consuming. Using an artificial intelligence (AI) machine learning model, especially convolution neural networks (CNN), it is possible to streamline these manual tasks on image information and to protect wildlife and record and predict behavior. Ecological research using deep-learning-based object recognition technology includes various research purposes such as identifying, detecting, and identifying species of wild animals, and identification of the location of poachers in real-time. These advances in the application of AI technology can enable efficient management of endangered wildlife, animal detection in various environments, and real-time analysis of image information collected by unmanned aerial vehicles. Furthermore, the need for school education and social use on biodiversity and environmental issues using AI is raised. School education and citizen science related to ecological activities using AI technology can enhance environmental awareness, and strengthen more knowledge and problem-solving skills in science and research processes. Under these prospects, in this paper, we compare the results of our early 2013 study, which automatically identified African cichlid fish species using photographic data of them, with the results of reanalysis by CNN deep learning method. By using PyTorch and PyTorch Lightning frameworks, we achieve an accuracy of 82.54% and an F1-score of 0.77 with minimal programming and data preprocessing effort. This is a significant improvement over the previous our machine learning methods, which required heavy feature engineering costs and had 78% accuracy.

• Journal of Environmental Impact Assessment
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• v.23 no.2
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• pp.137-149
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• 2014

The purpose of this study is to investigate the dynamics of the Zacco platypus population among streams in the Gongjicheon water system, Korea from December 2010 to October 2011. In this study, fish fauna was collected 27 Species belonged to 9 Families. The legal protection species, such as a natural monument and endangered species was not collected. Korean endemic species was collected 6 species including to Z. koreanus. The ratio of Korean endemic species was 22.6%, and it was lower than 51.3% that average of Korean endemic species in the Hangang water system. About these status, we considered that Gongjicheon water system had lost of the unique characteristics of the Hangang water system by the anthropogenic disturbances. The result of analysis to length-weight relationship and condition factor(K) of Z. platypus population in the Gongjicheon water system, the regression coefficient value(b) to indication of growth degree of the population was 3.04 and the slope of the condition factor(K) to indication of corpulency had positive value, respectively. These results seems to be that the Z. platypus population is maintained to a little unstably. In addition, the values of the degree of growth and corpulence were very low than the other natural streams in the Hangang water system, so it considered that the many artificially stress factors are occurred in this study area. These results are similar to Fish Assessment Index(FAI) in the assessment for health of aquatic ecosystem. Therefore, we are considered to require precise investigation and sustained monitoring for the restorations of stream ecosystem in the Gongjicheon water system.

• Korean Journal of Ichthyology
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• v.23 no.1
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• pp.10-20
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• 2011

Genetic determinant for metallothionein (MT), a cysteine-rich protein playing essential roles in metal detoxification and homeostasis, was characterized in the Korean bitterling (Acheilognathus signifer, Cyprinidae), an endemic fish species. The full-length A. signifer MT (AsMT) cDNA (551 bp) is composed of a single open-reading frame (ORF) to encode a polypeptide of 60 amino acids containing 20 cysteine residues whose positions are conserved in most cypriniform MTs. At the genomic level, the AsMT (2,593 bp spanning the 5'-flanking region to the 3'-untranslated region) represented a conserved tripartite (three exons interrupted by two introns) structure with AT-rich introns. The upstream regulatory region (-1,914 bp from the ATG initiation codon) of AsMT displayed various sites and motifs for transcription factors involved in the metal-mediated regulation and stress/immune responses. The AsMT transcript was ubiquitously detected in various organs with variable expression levels, where the ovary and intestine showed the highest expression, while the heart and skeletal muscle represented the lowest level. During an exposure to copper (immersion in $0.5\;{\mu}M$ Cu for 48 h), the levels of AsMT transcripts were significantly elevated in the liver (more than 3.5-fold), moderately in the gill, kidney, and spleen (ranging from 1.5- to 2.5-fold), and barely in the brain and intestine. Results of this study could form a useful basis to explore the metal-related stress physiology of this endangered fish species.

• Ecology and Resilient Infrastructure
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• v.6 no.4
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• pp.179-190
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• 2019

In this study, a fish survey was conducted to investigate the habitat status of black shinner (Pseudopungtungia nigra) designated as endangered species level from the lower part of Yongdam Dam to the upper part of Daecheong Dam. Biodiversity analysis was performed on the basis of the number of fish emerged, and biological health and physical habitat environment were quantitatively analyzed using collected P. nigra. According to the survey, the habitat range of P. nigra was found from Banguri-myeon, Buri-myeon, Geumsan-gun, downstream of Yongdam Dam. The biodiversity analysis results of all species appeared to be low in overall dominance index and relatively high in species diversity and uniformity index. In addition, P. nigra collected in this study was confirmed to have normal growth and nutritional status by the full-length-weighted relativities and condition factor. The physical habitat environment of P. nigra was 0.3 - 0.6 m in depth, 0.3 - 0.7 m/s in flow rate, and bed materials showed high frequency of occurrence in the range of cobbles (64.0 - 256.0 mm) to boulders (>256.0 mm). These results are expected to be used as data for habitat restoration and management in the future as basic data on the spatial range and preferred physical habitat environment of P. nigra in Geumgang.

• Korean Journal of Ichthyology
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• v.20 no.4
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• pp.255-262
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• 2008

The endemic Korean stumpy bullhead Pseudobagrus brevicorpus is a first-grade endangered wild fish as designated by the Ministry of Environment of Korea. As part of its restoration and proliferation effort, a histological study of this fish was carried out to investigate sex differentiation and gonadal development based on F1 generation individuals obtained by artificial breeding. On days 4~5 after hatching, a pair of genital ridges including clusters of primordial germ cells was observed between the gut and the mesonephric duct. On days 20 after hatching, the ovary began to initially differentiate and contained early oocytes with chromatin-nucleolus and peri-nucleolus stages on days 30~40 after hatching. As yolk material accumulated after day 80 from hatching, the oocytes grew increasingly large and were surrounded by a distinct follicular layer. On days 306 after hatching, the oocytes grew toward a mature ovum. In the males, the testis was distinguished by emergence of spermatogonium cells on 25 days after hatching, and day 40 after hatching it contained a small number of seminal lobes forming cysts. From 173 days after hatching, the testis consisted of numerous enlarged seminal lobes including spermatocytes and spermatids. Over 14 months after hatching, some seminal lumens were filled with spermatozoa.

• Korean Journal of Ichthyology
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• v.32 no.4
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• pp.232-238
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• 2020

The objective of the present study was to investigate fish farm and growth performances of Chinese muddy loach (Misgurnus mizolepis) under indoor and outdoor aquaculture conditions for the domestic loach aquaculture industry. The investigation was conducted from August 2017 to October 2019 at one indoor farm (D-site) and two outdoor farms (P1-site and P2-site). Results showed that WG (weight gain), DWG (daily weight gain), and SWG (specific weight gain) based on growth measurements were 175.27±36.2%, 7.98±3.3%, and 0.94±0.2% at D-site, 320±34%, 4.07±0.6%, and 0.55±0.1% at P1-site, and 295.9±53%, 4.15±0.5%, and 0.62±0.1% at P2-site, respectively. WG was higher in outdoor farms (P1-site and P2-site), while DWG and SWG were higher in the indoor farm (D-site). Such differences of the present study might be due to differences in growth, water quality, plant and sale frequency depending on aquaculture types. In particular, outdoor farms takes more than a year to have sales whereas indoor farms can have sales three times in a year.

• Korean Journal of Ichthyology
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• v.34 no.4
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• pp.262-269
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• 2022

A distribution survey was conducted from 2018 to 2020 to evaluate the distribution status, habitat characteristics, and extinction threat of the short ninespine stickleback Pungitius kaibarae (Gasterosteidae). Literature reports of P. kaibarae distribution have been sorted by each period, 1980~1996, 1997~2005, and 2007~2017, and the samples were collected in 32, 43, and 64 stations for each period. Among the 75 streams and 193 sampling sites investigated during the study period, 1,400 P. kaibarae individuals were collected from 26 streams at 39 sites. The main habitat of P. kaibarae was downstream or brackish water zones with a low altitude, slow water velocity, and many aquatic plants. The main reasons for the decline in population size were assumed to be drought and flood, river work for flood restoration and river maintenance, bridges construction, and predation by the exotic fish species Micropterus salmoides. Previous evidence reported a 42.6% reduction in occupancy within 10 years, a decline in habitat quality, and the spread and impact of the exotic fish species Micropterus salmoides. Therefore, P. kaibarae is now considered a Vulnerable (VU A2ace) species based on the IUCN Red List categories and criteria. Therefore, P. kaibarae should be redesignated as an endangered species by the Ministry of Environment and systematically managed.

• Korean Journal of Ichthyology
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• v.32 no.2
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• pp.39-48
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• 2020

The slender shinner (Pseudopungtungia tenuicorpa), a tiny freshwater fish of about 8 to 10 cm belonging to Cyprinidae, is an endangered species found only in the Han and Imjin Rivers on the Korean Peninsula. During the breeding season, this species spawns in nests of Coreoperca herzi, a predator of this species, or small crevices on rocks. This unique reproductive ecology can make this species more vulnerable to anthropogenic perturbance that can further limit the places to spawn. Here, mtDNA and microsatellite loci were analyzed to identify the genetic diversity and structure of slender shinners and further to provide the basic data necessary for the conservation planning of this species. A total of 28 polymorphic microsatellite markers were developed using Illumina paired-end sequencing, and 67 slender shinners collected from three localities in the Han River were genotyped using these loci. This species showed a remarkably high level of genetic diversity with mean expected heterozygosity of 0.914 and mean allele number per locus of 27.9, and no signature of drastic demographic decline was detected. As a result of our microsatellite analysis, the genetic structure between the two stems of the Han River, North Han and South Han, was prominent. Such a genetic structure was also evident in the sequence analysis of 14 haplotypes obtained from mtDNA control region. Although slender shinners are only found in very limited areas around the world, the genetic structure indicates that there is a block of gene flow among the populations, which should be reviewed in the future if management and restoration of this species is needed.

• Korean Journal of Environment and Ecology
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• v.28 no.4
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• pp.432-441
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• 2014

April, 2005 to October, 2013. The collected species during the survey period were 17 species belonging to 6 families. Dominant species was Zacco koreanus(Relative abundance 59.9%) and subdominant species Pungtungia herzi(8.5%). Korea endemic species were 12, including Coreoleuciscus splendidus. The species of Hemibarbus mylodon was identified as natural monument, and Pseudopungtungia tenuicorpa and Gobiobotia brevibarba were endangered species. Water quality assessment of Gapyeong Stream, had lately maintained the rating of "very good" for nine years, based on the Ministry of the Environment standards notice. It was found that there was a tendency for populations which is Coreoperca herzi carnivorous species decreases, increases omnivorous species Zacco platypus. As a result of community analysis, dominant index was 0.58~0.86, diversity index was 0.94~1.77 and richness index was 0.99~2.39. As a result of using the Rarefaction curve, were analyzed occurrence species expected each year, number of species is estimated from a sample of 151 individuals, up to 12(2005) was at least 5(2007) species. The regression coefficient (b) in relation to length-weight on Z. koreanus population were annual average $3.29{\pm}1.11$, condition factor slope $0.0034{\pm}0.0021$, which maintained good growth condition and stabilized population.

• Korean Journal of Ichthyology
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• v.23 no.1
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• pp.61-69
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• 2011

Gene and promoter structures of metallothionein(MT) from Miho spine loach (Cobitis choii; Cypriniformes) were characterized, and the transcriptional responses to experimental exposures to heavy metals and heat stress were examined. The C. choii metallothionein displayed well-conserved features of teleostean metallothioneins at gDNA, mRNA and amino acid levels. Bioinformatic analysis predicted that the C. choii MT regulatory region potentially possessed various motifs or elements targeted by various transcription factors associated with metal-coordinating regulation (e.g., metal transcription factor-1), immune responses (e.g., nuclear factor kappa B), and thermal modulations (e.g., heat shock factor). Acute heavy-metal exposures to 0.5 or $1.0\;{\mu}M$ of cadmium (Cd), copper (Cu), manganese (Mn), nickel (Ni) or zinc (Zn) showed that MT transcription was significantly stimulated by Cd (9.6-fold relative to non-exposed control) and Cu (10.4-fold), only moderately by Mn (2.4-fold), but hardly by Ni and Zn. Elevation of water temperature from $25^{\circ}C$ to $31^{\circ}C$ caused a rapid modulation of MT mRNAs toward upregulation to 9.5-fold; however, afterward the elevated mRNA level slightly decreased during further incubation at $31^{\circ}C$ for 6 h. Results from this study suggest that MT-based expression assay could be a useful basis for better understanding the metal- and/or heat-caused stresses in this endangered fish species.