• Title/Summary/Keyword: Theoretical descriptors

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Prediction Partial Molar Heat Capacity at Infinite Dilution for Aqueous Solutions of Various Polar Aromatic Compounds over a Wide Range of Conditions Using Artificial Neural Networks

  • Habibi-Yangjeh, Aziz;Esmailian, Mahdi
    • Bulletin of the Korean Chemical Society
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    • v.28 no.9
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    • pp.1477-1484
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    • 2007
  • Artificial neural networks (ANNs), for a first time, were successfully developed for the prediction partial molar heat capacity of aqueous solutions at infinite dilution for various polar aromatic compounds over wide range of temperatures (303.55-623.20 K) and pressures (0.1-30.2 MPa). Two three-layered feed forward ANNs with back-propagation of error were generated using three (the heat capacity in T = 303.55 K and P = 0.1 MPa, temperature and pressure) and six parameters (four theoretical descriptors, temperature and pressure) as inputs and its output is partial molar heat capacity at infinite dilution. It was found that properly selected and trained neural networks could fairly represent dependence of the heat capacity on the molecular descriptors, temperature and pressure. Mean percentage deviations (MPD) for prediction set by the models are 4.755 and 4.642, respectively.

Artificial Neural Network Prediction of Normalized Polarity Parameter for Various Solvents with Diverse Chemical Structures

  • Habibi-Yangjeh, Aziz
    • Bulletin of the Korean Chemical Society
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    • v.28 no.9
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    • pp.1472-1476
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    • 2007
  • Artificial neural networks (ANNs) are successfully developed for the modeling and prediction of normalized polarity parameter (ETN) of 216 various solvents with diverse chemical structures using a quantitative-structure property relationship. ANN with architecture 5-9-1 is generated using five molecular descriptors appearing in the multi-parameter linear regression (MLR) model. The most positive charge of a hydrogen atom (q+), total charge in molecule (qt), molecular volume of solvent (Vm), dipole moment (μ) and polarizability term (πI) are input descriptors and its output is ETN. It is found that properly selected and trained neural network with 192 solvents could fairly represent the dependence of normalized polarity parameter on molecular descriptors. For evaluation of the predictive power of the generated ANN, an optimized network is applied for prediction of the ETN values of 24 solvents in the prediction set, which are not used in the optimization procedure. Correlation coefficient (R) and root mean square error (RMSE) of 0.903 and 0.0887 for prediction set by MLR model should be compared with the values of 0.985 and 0.0375 by ANN model. These improvements are due to the fact that the ETN of solvents shows non-linear correlations with the molecular descriptors.

Quantitative Structure-Activity Relationship (QSAR) Study by Use of Theoretical Descriptors : Quinolone and Naphthyridine

  • Lee Keun Woo;Kim Hojing
    • Bulletin of the Korean Chemical Society
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    • v.15 no.12
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    • pp.1070-1079
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    • 1994
  • Quantitative Structure-Activity Relationship (QSAR) studies are performed for the sets of 40 quinolones and 47 naphthyridines. Net charge, van der Waals volume, polarizability, and dipole moment are empolyed as theoretical descriptors(independent variables) to find the relationship between activity and physicochemical properties such as electrostatic effect, steric effect, and transferability. The results are analyzed by the regression and the factor analysis. It is found that for Gram-negative bacteria, the QSAR of quinolone and naphthyridine are substantially different: to describe the activity, the electrostatic effect is the most important for quinolone, and the steric effect and the transferability for naphthyridine.

Quantitative Structure-Activity Relationships (QSAR) Study on C-7 Substituted Quinolone

  • Lee, Geun U;Gwon, Sun Yeong;Hwang, Seon Gu;Lee, Jae Uk;Kim, Ho Jing
    • Bulletin of the Korean Chemical Society
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    • v.17 no.2
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    • pp.147-152
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    • 1996
  • To see the quantitative relationship between the structures of the C-7 substituted quinolones and their antibacterial activities, theoretical parameters such as the molecular van der Waals volume, surface area and some electrostatic parameters based on the molecular electrostatic potential, which represent lipophilicity, and some quantum mechanical parameters are introduced as descriptors. The sixteen substituted quinolone derivatives and twenty bacteria are used for the study. It is found that the QSARs of C-7 substituted quinolones are obtained for eleven bacteria and our descriptors are more useful for Gram positive organisms than negative ones. It is also shown that molecular surface area (or molecular Waals volume) of the C-7 substituent and net charge of C-7 atom of the quinolones are the descriptors of utmost importance.

A Study on Multi-Lingual Thesaurus Database Construction of Scientific and Technical Terms (과학기술용어(科學技術用語) 시소러스 대역(對譯) 데이터베이스 구축(構築))

  • Kim, Eun-Shik
    • Journal of Information Management
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    • v.22 no.2
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    • pp.1-28
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    • 1991
  • The objective of this study is to prepare a source data in order to establish a standardization of scientific and technical terms in Korean language. This will contribute to accelerate the production of Korean databases in scientific and technical field and will be used as the most convenient search tool for accessing to the foreign database. This study includes the construction of the multi-lingual thesaurus comprising of Korean, English, and Japanese. First of all a theoretical background on thesaurus is reviewed, and terms are collected from JICST Thesaurus, English-Japanese List and JICST Thesaurus, Japanese-English List published by JICST in 1987. This multi-lingual thesaurus covers 38,318 terms of Korean descriptors, 2,870 terms of Korean non-descriptors, 38,318 terms of English descriptors, 11,910 terms of English non-descriptors, and 38,318 terms of Japanese descriptors, 9,789 terms of Japanese non-descriptors.

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Theoretical Approach for Physicochemical Factors Affecting Human Toxicity of Dioxins (다이옥신의 인체 독성에 영향을 미치는 물리화학적 인자에 대한 이론적 접근)

  • 황인철;박형석
    • Environmental Analysis Health and Toxicology
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    • v.14 no.1_2
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    • pp.65-73
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    • 1999
  • Dioxins refer to a family of chemicals comprising 75 polychlorinated dibenzo-p-dioxin (PCDD) and 135 polychlorinated dibenzo-p-furan (PCDF) congeners, which may cause skin disorder, human immune system disruption, birth defects, severe hormonal imbalance, and cancer. The effects of exposure of dioxin-like compounds such as PCBs are mediated by binding to the aryl hydrocarbon receptor (AHR), which is a ligand-activated transcription factor. To grasp physicochemical factors affecting human toxicity of dioxins, six geometrical and topological indices, eleven thermodynamic variables, and quantum mechanical descriptors including ESP (electrostatic potential) were analyzed using QSAR and semi-empirical AM1 method. Planar dioxins with high lipophilicity and large surface tension show the probability that negative electrostatic potential in the lateral oxygen may make hydrogen bonding with DNA bases to be a carcinogen.

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An ab Initio Predictive Study on Solvent Polarity (용매 극성도의 이론적 예측 연구)

  • Park, Min-Kyu;Cho, Soo-Gyeong
    • Journal of the Korea Institute of Military Science and Technology
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    • v.11 no.3
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    • pp.154-160
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    • 2008
  • We investigated molecular polarity by using theoretical means and comparing empirical solvent polarity. Our approach employed electrostatic potentials at the molecular surface calculated by density functional methods. A number of molecular descriptors related to molecular polarities were computed from molecular surface electrostatic potentials. Among computed molecular descriptors, the most positive electrostatic potential provided the best correlation with the empirical solvent polarities. A regression equation was developed in order to predict molecular polarities of molecules whose experimental solvent polarities were unknown. The new regression equations were utilized in estimating solvent polarities of cubane derivatives which are considered important precusors of high-energy density meterials.

Structure-Activity Relationship Study on Cephalosporins with Mechanism-based Descriptors

  • Jun-Ho Choi;Hojing Kim
    • Bulletin of the Korean Chemical Society
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    • v.14 no.5
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    • pp.631-635
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    • 1993
  • The polarizability and the transition state energy of a cephalosporin are assumed to be theoretical indices of the permeability through the outer membrane and of reactivity of ${\beta}$ -lactam ring with penicillin binding proteins, respectively, in Gram-negative bacteria. They are computed by AM1 method and used as variables of quantitative structure-activity relationship study. The results justify quadratic dependence of the activity on the variables. The intersection of difference volumes between $\beta-lactamase$ stable cephalosporins and unstable ones manifests that the steric hindrance of 7-side chain is responsible for the ${\beta}$ -lactamase stability.

Theoretical Study on Hydrophobicity of Amino Acids by the Solvation Free Energy Density Model

  • Kim, Jun-Hyoung;Nam, Ky-Youb;Cho, Kwang-Hwi;Choi, Seung-Hoon;Noh, Jae-Sung;No, Kyoung-Tai
    • Bulletin of the Korean Chemical Society
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    • v.24 no.12
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    • pp.1742-1750
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    • 2003
  • In order to characterize the hydrophobic parameters of N-acetyl amino acid amides in 1-octanol/water, a theoretical calculation was carried out using a solvation free energy density model. The hydrophobicity parameters of the molecules are obtained with the consideration of the solvation free energy over the solvent volume surrounding the solute, using a grid model. Our method can account for the solvent accessible surface area of the molecules according to conformational variations. Through a comparison of the hydrophobicity of our calculation and that of other experimental/theoretical works, the solvation free energy density model is proven to be a useful tool for the evaluation of the hydrophobicity of amino acids and peptides. In order to evaluate the solvation free energy density model as a method of calculating the activity of drugs using the hydrophobicity of its building blocks, the contracture of Bradykinin potentiating pentapeptide was also predicted from the hydrophobicity of each residue. The solvation free energy density model can be used to employ descriptors for the prediction of peptide activities in drug discovery, as well as to calculate the hydrophobicity of amino acids.

A Study about Characteristics of Teachers' Analysis of an Instruction : Focused on Teachers' Knowledge for Teaching Statistics (교사들의 수업 분석 특징에 대한 연구 -통계 지도를 위한 교사 지식을 중심으로-)

  • Shin, Bo Mi
    • School Mathematics
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    • v.16 no.3
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    • pp.519-542
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    • 2014
  • This study analyzed characteristics which emerged while 45 secondary school teachers observed a video clip about a statistics instruction. The aim of this study based on the analysis was to deduct implications in terms of the various means which would enhance teachers' knowledge in teaching statistics and assist in designing statistics education programs for teachers and professional development initiatives. To achieve this goal, this research firstly developed framework descriptors which provided this study with theoretical foundations to investigate what characteristics appeared in the teachers' observation. Secondly, this study probed the observation results from the teachers in the light of the framework. Therefore, some issues in the teacher education program for teaching statistics were thirdly identified in the categories of 'focus of instruction', 'role of the teacher and discourse' and 'data and technology' based on the analysis. This research inspires the elaboration of exactly what features effective statistics classes have through the framework descriptors and additionally the elucidation of essential matters relevant to statistics education on the basis of the issues.

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