• 제목/요약/키워드: RNA quality control

검색결과 107건 처리시간 0.018초

미나리 분말을 첨가한 청국장의 발효 및 품질특성 (Fermentation and Quality Characteristics of Cheonggukjang with Addition of Dropwort (Oenanthe javanica D.C.) Powder)

  • 이신호;김진학
    • 한국식품영양과학회지
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    • 제42권7호
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    • pp.1133-1138
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    • 2013
  • 미나리 유통과정중 생성되는 부산물의 활용방안과 청국장의 품질 및 기호성 개선 방안을 모색하기 위해 청국장의 제조시 전처리 방법을 달리한 미나리 분말 첨가에 따른 발효 및 품질 특성을 비교 검토하였다. 발효균주로 사용한 Bacillus subtilis RS-9은 볏짚으로부터 분리된 30 균주 중 대두 분해력, 단백 분해력, 전분 분해력, 항균활성이 가장 우수한 균주를 16S rRNA 염기서열 분석을 통해 동정한 후 사용하였다. 전처리 방법을 달리한 미나리 분말을 0.5%, 1%로 혼합하여 제조한 청국장의 발효 및 품질특성을 조사한 결과, 미나리 분말 혼합 청국장의 pH는 발효 전 기간 동안 대조구보다 낮은 경향을 나타내었으며, 첨가 미나리의 전처리 방법에 따라서는 뚜렷한 차이를 관찰할 수 없었다. 청국장의 발효 후 총균수는 8.70~8.88 log CFU/mL이었으며, 발효기간이 경과함에 따라 모든 처리구에서 증가하였다. 미나리 혼합 청국장의 아미노태 질소와 점질물 함량은 발효 전 기간 동안 대조구보다 낮은 경향을 나타내었다. 총 폴리페놀 함량은 발효후 모든 군이 증가하였으며, 스팀처리 미나리 첨가구가 $590.24{\mu}g/mL$로 가장 높은 함량을 나타내었다. ABTS radical 소거능은 대조구에 비해 뚜렷이 높았으며, 발효 후 모든 처리구에서 활성이 증가하였고 스팀처리 미나리 첨가구가 82.16%로 가장 우수하였다. 관능검사 결과는 생미나리 분말 0.5% 첨가군이 맛과 종합적 기호도에서 가장 우수하였다.

Feeding strategies alter gene expression of the calpain system and meat quality in the longissimus muscle of Braford steers

  • Coria, Maria Sumampa;Reineri, Pablo Sebastian;Pighin, Dario;Barrionuevo, Maria Guadalupe;Carranza, Pedro Gabriel;Grigioni, Gabriela;Palma, Gustavo Adolfo
    • Asian-Australasian Journal of Animal Sciences
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    • 제33권5호
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    • pp.753-762
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    • 2020
  • Objective: The aim of the present study was to determine the effect of supplementing pasture-finished steers with corn silage on the expression level of the calpain system proteins and beef tenderization. Methods: Thirty Braford steers grazing on summer pasture were used for the study. For 120 days fifteen animals were supplemented with corn silage at 1% of body weight per head per day (Suppl) whereas the remaining 15 steers only received pasture (Contr). Carcass and meat traits were evaluated and compared between groups. Gene expression and activities of proteases (calpain 1 and calpain 2) and inhibitor (calpastatin) were measured using real-time polymerase chain reaction and casein zymography. Results: Carcass and meat traits were significantly different between feeding systems. Supplemented steers showed higher hot carcass weight (p<0.01), fat content (p = 0.02), and Warner-Bratzler shear force (p = 0.03). Furthermore, the control group showed higher protease:inhibitor ratios, at mRNA (p = 0.01) and protein levels (p<0.10). Warner-Bratzler shear force and mRNA calpains:calpastatin ratio were associated in both feeding systems (p<0.01). Conclusion: Based on the results obtained in the study, beef tenderness differences among finishing strategies could be modulated through differential expression of the calpain system proteins.

Potential harmful effects of viral hemorrhagic septicemia virus in mammals

  • Ho, Diem Tho;Kim, Nameun;Yun, Dongbin;Kim, Ki-Hong;Kim, Jae-Ok;Jang, Gwang Il;Kim, Do-Hyung
    • Fisheries and Aquatic Sciences
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    • 제25권6호
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    • pp.320-326
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    • 2022
  • Most of the emerging diseases that threaten humans are caused by RNA viruses which are extremely mutable during evolution. The fish RNA virus, viral hemorrhagic septicemia virus (VHSV) can infect a broad range of aquatic animal hosts, but the transmissibility of VHSV to mammals has not been thoroughly investigated. Therefore, our study aimed to investigate the potential adverse effects of VHSV in mammals. Briefly, the survival of VHSV was determined using only minimum essential media (MEM-2) and mammalian SNU-1411 and hepa-1c1c7s cells at 15℃ and 37℃. Mice (Mus musculus, 27.3 ± 1.9 g) were intravenously injected with VHSV (2.37E+05 TCID50·mice-1) in triplicate. Clinical signs and survival rates were examined at 14 days post-challenge, and infection was confirmed in the surviving mice. The 50% tissue culture infective dose (TCID50) and polymerase chain reaction analysis were used to determine viral titers and the infection rate, respectively. The titer of VHSV suspended in MEM-2 at 15℃ was reduced by only one log after 8 days, whereas the virus maintained at 37℃ was inactivated 8 days post-inoculation (dpi). There were no recognizable cytopathic effects in either SNU-1411 or hepa-1c1c7s cells inoculated with VHSV at 15℃ and 37℃. VHSV in those cell lines at 37℃ was rapidly decreased and eventually inactivated at 12 dpi, whereas virus at 15℃ remained at low concentrations without replication. In vivo experiment showed that there were no signs of disease, mortality, or infection in VHSV-infected mice. The results of this study indicate that it is highly unlikely that VHSV can infect mammals including humans.

The cooperative regulatory effect of the miRNA-130 family on milk fat metabolism in dairy cows

  • Xiaofen Li;Yanni Wu;Xiaozhi Yang;Rui Gao;Qinyue Lu;Xiaoyang Lv;Zhi Chen
    • Animal Bioscience
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    • 제37권7호
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    • pp.1289-1302
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    • 2024
  • Objective: There is a strong relationship between the content of beneficial fatty acids in milk and milk fat metabolic activity in the mammary gland. To improve milk quality, it is therefore necessary to study fatty acid metabolism in bovine mammary gland tissue. In adipose tissue, peroxisome proliferator-activated receptor gamma (PPARG), the core transcription factor, regulates the fatty acid metabolism gene network and determines fatty acid deposition. However, its regulatory effects on mammary gland fatty acid metabolism during lactation have rarely been reported. Methods: Transcriptome sequencing was performed during the prelactation period and the peak lactation period to examine mRNA expression. The significant upregulation of PPARG drew our attention and led us to conduct further research. Results: According to bioinformatics prediction, dual-luciferase reporter system detection, real-time quantitative reverse transcription polymerase chain reaction and Western blotting, miR-130a and miR-130b could directly target PPARG and inhibit its expression. Furthermore, triglyceride and oil red O staining proved that miR-130a and miR-130b inhibited milk fat metabolism in bovine mammary epithelial cells (BMECs), while PPARG promoted this metabolism. In addition, we also found that the coexpression of miR-130a and miR-130b significantly enhanced their ability to regulate milk fat metabolism. Conclusion: In conclusion, our findings indicated that miR-130a and miR-130b could target and repress PPARG and that they also have a functional superposition effect. miR-130a and miR-130b seem to synergistically regulate lipid catabolism via the control of PPARG in BMECs. In the long-term, these findings might be helpful in developing practical means to improve high-quality milk.

Cell Proliferation and Motility Are Inhibited by G1 Phase Arrest in 15-kDa Selenoprotein-Deficient Chang Liver Cells

  • Bang, Jeyoung;Huh, Jang Hoe;Na, Ji-Woon;Lu, Qiao;Carlson, Bradley A.;Tobe, Ryuta;Tsuji, Petra A.;Gladyshev, Vadim N.;Hatfield, Dolph L.;Lee, Byeong Jae
    • Molecules and Cells
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    • 제38권5호
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    • pp.457-465
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    • 2015
  • The 15-kDa selenoprotein (Sep15) is a selenoprotein residing in the lumen of the endoplasmic reticulum (ER) and implicated in quality control of protein folding. Herein, we established an inducible RNAi cell line that targets Sep15 mRNA in Chang liver cells. RNAi-induced Sep15 deficiency led to inhibition of cell proliferation, whereas cell growth was resumed after removal of the knockdown inducer. Sep15-deficient cells were arrested at the G1 phase by upregulating p21 and p27, and these cells were also characterized by ER stress. In addition, Sep15 deficiency led to the relocation of focal adhesions to the periphery of the cell basement and to the decrease of the migratory and invasive ability. All these changes were reversible depending on Sep15 status. Rescuing the knockdown state by expressing a silent mutant Sep15 mRNA that is resistant to siRNA also reversed the phenotypic changes. Our results suggest that SEP15 plays important roles in the regulation of the G1 phase during the cell cycle as well as in cell motility in Chang liver cells, and that this selenoprotein offers a novel functional link between the cell cycle and cell motility.

Characterization of microbiota diversity of engorged ticks collected from dogs in China

  • Wang, Seongjin;Hua, Xiuguo;Cui, Li
    • Journal of Veterinary Science
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    • 제22권3호
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    • pp.37.1-37.14
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    • 2021
  • Background: Ticks are one of the most common external parasites in dogs, and are associated with the transmission of a number of major zoonoses, which result in serious harm to human health and even death. Also, the increasing number of pet dogs and pet owners in China has caused concern regarding human tick-borne illnesses. Accordingly, studies are needed to gain a complete understanding of the bacterial composition and diversity of the ticks that parasitize dogs. Objectives: To date, there have been relatively few reports on the analysis of the bacterial community structure and diversity in ticks that parasitize dogs. The objective of this study was to investigate the microbial composition and diversity of parasitic ticks of dogs, and assessed the effect of tick sex and geographical region on the bacterial composition in two tick genera collected from dogs in China. Methods: A total of 178 whole ticks were subjected to a 16S ribosomal RNA (rRNA) next generation sequencing analysis. The Illumina MiSeq platform targeting the V3-V4 region of the 16S rRNA gene was used to characterize the bacterial communities of the collected ticks. Sequence analysis and taxonomic assignment were performed using QIIME 2 and the GreenGene database, respectively. After clustering the sequences into taxonomic units, the sequences were quality-filtered and rarefied. Results: After pooling 24 tick samples, we identified a total of 2,081 operational taxonomic units, which were assigned to 23 phyla and 328 genera, revealing a diverse bacterial community profile. The high, moderate and low prevalent taxa include 46, 101, and 182 genera, respectively. Among them, dominant taxa include environmental bacterial genera, such as Psychrobacter and Burkholderia. Additionally, some known tick-associated endosymbionts were also detected, including Coxiella, Rickettsia, and Ricketssiella. Also, the potentially pathogenic genera Staphylococcus and Pseudomonas were detected in the tick pools. Moreover, our preliminary study found that the differences in microbial communities are more dependent on the sampling location than tick sex in the tick specimens collected from dogs. Conclusions: The findings of this study support the need for future research on the microbial population present in ticks collected from dogs in China.

돼지 Duroc 품종에서 미토콘드리아 유전체 서열의 특성과 집단의 유전적 다양성 (Complete Mitochondrial Genome Sequence and Genetic Diversity of Duroc Breed)

  • 조인철;한상현;최유림;고문석;이정규;이준헌;전진태
    • Journal of Animal Science and Technology
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    • 제46권6호
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    • pp.937-946
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    • 2004
  • Duroc 품종은 돼지 사육에 있어 산육성과 육질 향상을 위해 이용되고 있다. 본 연구는 육종에 많이 이용되는 Duroc 품종의 모계 특이적인 서열의 검색과 계통유전학적 유연관계의 정립을 위하여 미토콘드리아 유전체의 전체 염기서열을 결정하고 집단 내 다형성을 조사하였다. mtDNA 전체 서열의 길이는 16,584-bp 이고, D-loop과 tRNA, rRNA 유전자 영역에서는 삽입/결실이 확인되었다. 4개의 coding gene (COⅡ, COⅢ, ND3, ND4)에서 불완전한 종결코돈을, ND4L과 ND2 유전자는 선택적 개시코돈 양상을 보였다. Duroc 집단에 대한 분석 결과 조절영역에서의 특이적인 11-bp 중복 단위가 일부 개체(15.2%)에서 발견되었고, ND2의 개시코돈과 CYTB 유전자에서도 다형현상을 보였다. 각각의 유전자 영역에서의 다형성은 서로 연관되어 있었고, 그 결과 Duroc 집단은 크게 두 가지 haplotype으로 구분되었다. 계통수에서 Duroc mtDNA 서열은 유럽계열 cluster에 위치하였으나, haplotype 분석과 기존에 연구결과들을 종합해 보면 Duroc 품종은 여러 모계선조 집단에서 기원한 것으로 보이며, 유럽과 아시아 계열 모두가 품종 형성에 이용된 것으로 사료된다된 것으로 사료된다.

역전사 중합효소 연쇄반응(RT-PCR)에 의한 HCV-RNA의 검출 : Biotin 및 방사성옥소 표지 Primer로 구성된 Kit의 이용 (Detection of HCV-RNA by Reverse Transcription Polymerase Chain Reaction Using Biotinylated and Radioiodinated Primers)

  • 류진숙;문대혁;천준홍;정윤영;박흥동;정영화;이영상
    • 대한핵의학회지
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    • 제28권2호
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    • pp.220-226
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    • 1994
  • RT-PCR법에 의한 HCV-RNA검출을 임상검사에 적용하는 노력의 일환으로 biotin 및 $^{125}I$을 표지시킨 primer를 이용하여 최근 개발되어 있는 상품화된 kit 로 HCV-RNA 검출을 시도하고 그 결과를 평가하여 보았다. 연구대상은 anti-HCV 양성인 118명의 성인환자로, 방법은 환자 혈청내의 HCV-RNA를 guanidium-thiocynate 용액을 이용하여 추출한 뒤 AMPLICIS II $HCV^{(R)}$(CIS, France)kit를 이용하여 cDNA로 역전사 후 1차 증폭을 시행하고, 다시 소량의 1차 증폭산물을 biotin과 $^{125}I$으로 각각 표지된 1쌍의 Primer로 이용하여 2차 증폭을 시행하였다. 증폭산물은 avidin이 코팅된 시험관에 반응시키고 감마선 계수기로 계수하였다. 검사의 재현성을 보기 위하여 anti-HCV 양성인 환자 혈청 중 무작위로 51개의 검체를 선정하여 반복실험하였고, 만성 간질환 환자로부터 얻은 34개의 검체는 본 연구소에서 확립된 다른 RT-PCR 방법으로도 검사를 병행하여 비교하였다. 결과는 다음과 같다. 1) Anti-HCV 양성이면서 조직검사상 만성감염이나 간경화 소견을 보이거나 6개월이상 지속적인 간기능 이상을 나타낸 환자 88명 중 85명 (97%)에서 HCV-RNA 양성이었고, 6개월 이상 간기능이 정상이었던 30명중에서는 73%인 22명에서 HCV-RNA양성 이었다. 2) 두가지 다른 방법으로 RT-PCR을 병행한 34명중, kit를 사용한 경우는 32명(94%)에서 양성소견을 보였고, 기존방법대로 전기 영동 후 ethidium bromide로 염색한 경우는 27명 (79%)에서 양성을 나타내었다. 3) 검사의 재현성을 보기 위하여 anti-HCV 양성인 51개의 검체를 2번 반복 실험하였을때, 82%에서 일치된 결과를 얻을 수 있었다. 이상에서 biotin 및 $^{125}I$ 표지된 primer로 구성된 kit를 이용했을 때 기존방법에 비하여 예민하게 HCV-RNA를 검출할 수 있었다. 그러나 여전히 검사에 많은 노력과 시간이 소요되고 반복 검사시 검사간 변이가 상당히 존재하고 있어 정도관리에 세심한 주의가 필요할 것으로 사료되었다.

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Effects of quercetin and coated sodium butyrate dietary supplementation in diquat-challenged pullets

  • Zhou, Ning;Tian, Yong;Liu, Wenchao;Tu, Bingjiang;Gu, Tiantian;Xu, Wenwu;Zou, Kang;Lu, Lizhi
    • Animal Bioscience
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    • 제35권9호
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    • pp.1434-1443
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    • 2022
  • Objective: This study was designed to investigate the hypothesis that dietary quercetin (QUE) and coated sodium butyrate (SB) supplementation alleviate oxidative stress in the small intestine of diquat (DIQ)-challenged pullets. Methods: A total of 200 13-week-old pullets were divided into four groups: the control group (CON), the DIQ group, the QUE group, and the coated SB group, and injected intraperitoneally with either saline (CON) or diquat (DIQ, QUE, and SB) to induce oxidative stress on day 0. Results: On the first day, the malondialdehyde and superoxide dismutase (SOD) concentrations in the SB group were significantly different from those in the DIQ and QUE groups (p<0.05), and dietary supplementation with SB increased serum glutathione peroxidase (GSH-PX) levels compared with the DIQ group (p<0.05). Quercetin and SB increased the levels of CLAUDIN-1 and zonula occludens-1 (ZO-1) in the jejunum. On the tenth day of treatment, QUE attenuated the decrease in GSH-PX levels compared to those of the CON group (p<0.05), while SB increased SOD, GSH-PX, and total antioxidant capacity levels compared to those of the DIQ group. Nuclear factor erythroid 2-related factor 2 (NRF2) and heme oxygenase-1 (HO-1) mRNA levels in the QUE and SB groups increased (p<0.05) and CLAUDIN-1 mRNA levels in the QUE and SB groups were upregulated compared to those in the DIQ group ileum tissue. Conclusion: Supplementation of QUE and SB demonstrated the ability to relieve oxidative stress in pullets post DIQ-injection with a time-dependent manner and QUE and SB may be potential antioxidant additives for relieving oxidative stress and protecting the intestinal barrier of pullets.

Dietary Alpha Lipoic Acid Improves Body Composition, Meat Quality and Decreases Collagen Content in Muscle of Broiler Chickens

  • El-Senousey, H.K.;Fouad, A.M.;Yao, J.H.;Zhang, Z.G.;Shen, Q.W.
    • Asian-Australasian Journal of Animal Sciences
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    • 제26권3호
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    • pp.394-400
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    • 2013
  • A total of 192 broiler chicks were used to evaluate the influence of dietary ${\alpha}$-lipoic acid (ALA) on growth performance, carcass characteristics and meat quality of broiler chickens with the purpose of developing a strategy to prevent the occurrence of pale, soft, and exudative (PSE) meat and to improve the meat quality of broilers. At 22 d of age, birds were allocated to 4 ALA treatments (0, 400, 800, and 1200 ppm). The results showed that dietary ALA significantly decreased average feed intake (AFI), average daily gain (ADG), final live body weight (BW) and carcass weight (p<0.05), while no difference in feed conversion ratio (FCR) was detected among chickens fed with and without ALA. Abdominal fat weight significantly decreased (p<0.05) for broilers fed 800 and 1200 ppm ALA. However when calculated as the percentage of carcass weight there was no significant difference between control and ALA treatments. Meat quality measurements showed that dietary ALA regulated postmortem glycolysis and improved meat quality as evidenced by increased muscle pH and decreased drip loss of meat (p<0.05). Although ALA did not change the tenderness of meat as indicated by meat shear force, dietary ALA decreased collagen content and mRNA expression of COL3A1 gene (p<0.05). In conclusion, the results indicate that dietary ALA may contribute to the improvement of meat quality in broilers.