• Title/Summary/Keyword: OMP-2

검색결과 103건 처리시간 0.03초

OMP 방법으로 분석한 하계 동해의 수계 특성 (Summer Hydrographic Features of the East Sea Analyzed by the Optimum Multiparameter Method)

  • 김일남;이동섭
    • Ocean and Polar Research
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    • 제26권4호
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    • pp.581-594
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    • 2004
  • 하계 동해의 기원 해수 T-S diagram 방법에다 용존 산소를 추가시키고, 자료를 위도-경도 평면상에서 표시하는 방법으로 기원해수를 판별하였다. 하계에 동해에서 총 8개의 기원해수가 판별되었다. 표층해수로는 1) 고온-저염의 EKCW, 2) 고온-최저염의 NKSW, 3) 고온-고염의 MTSW, 4) 저온-저염의 TSCW의 4종류와 5) 최고염의 TMW, 6) 저온-저염-고농도의 산소를 가지는 LCW인 2종류의 중층수 그리고 심층수로 7) 저온-고염-고농도의 산소를 가지는 ESIW, 8) 최저온-고염-저농도의 산소를 가지는 ESPW 8종류로 구분할 수가 있었다. 특히, 동해 중 북부 해역에서 발견된 최저염의 NKSW(North Korea Surface Water), 기존에 알려진 대마난류 표층수에 비해 고염의 특징을 보여준 MTSW(Modified Tsushima Surface Water), 그리고 타타르 해협에서 시베리아 연안을 따라 남하하는 TSCW(Tatar Surface Cold Water)등이 이번 연구에서 새롭게 정의되었다. 조성비로 본 기원 해수의 흐름 총 8개의 기원해수에 대해 조성비 50% 이상을 기준으로 한 각 기원해수의 흐름을 Fig. 7에 나타내었다. 먼저 표층의 흐름을 보면, EKCW는 대한해협 서수도를 통해 동해 연안을 따라 북상하는 흐름을 보였고, MTSW는 대단해협 동수도를 통해 동해로 진입하여 $40^{\circ}N$ 부근까지 영향을 미쳤다. TSCW는 타타르 해협에서 시베리아 연안을 따라서 블라디보스톡 부근까지 남하를 하였고, NKSW는 동해 중부의 $40^{\circ}NP{\sim}42^{\circ}N$ 부근에 국지적으로 분포하였다(Fig. 7a). 중층에서는, TMW가 $40^{\circ}N$ 부근까지 영향을 미쳤고, 동해 북부 해역에서 기원한 LCW와 ESIW에 세력에 막혀 더 북진을 못하고 동진하는 것으로 판단되었다. LCW는 동해 북부해역에서 반시계 방향의 순환하는 흐름과 연안을 따라서 남하하는 흐름 두 종류의 흐름이 있는 것으로 판단되었다(Fig. 7b). 심층에서는, ESIW가 동해 북부 연안을 따라 $36^{\circ}N$ 부근까지 남하하는 흐름을 보였고, ESPW는 수심 500m 부근에서 시베리아 연안을 따라 남부 연안까지 남하하는 한 줄기가 있음을 알 수 있었다. 점차 수심이 깊어지면서 동해 남 북부 전체를 ESPW로 채우고 있어 어떤 흐름의 특징보다는 동해 전체의 상당한 부피를 차지함을 알 수 있었다(Fig. 7d). 동해 북부해역에서 생성되는 냉수들이 연안을 따라서 동해 남부해역으로 이동하는 흐름을 보여주었다. 따라서 동해 내부 순환의 큰 줄기는 연안을 따라 흐르는 냉수들의 흐름이며, 매년 동해남부 해역에 발생하는 용승 현상도 이러한 흐름의 연장선에 있음을 짐작할 수 있다(Lee and Kim 2003).

Modal parameter identification with compressed samples by sparse decomposition using the free vibration function as dictionary

  • Kang, Jie;Duan, Zhongdong
    • Smart Structures and Systems
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    • 제25권2호
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    • pp.123-133
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    • 2020
  • Compressive sensing (CS) is a newly developed data acquisition and processing technique that takes advantage of the sparse structure in signals. Normally signals in their primitive space or format are reconstructed from their compressed measurements for further treatments, such as modal analysis for vibration data. This approach causes problems such as leakage, loss of fidelity, etc., and the computation of reconstruction itself is costly as well. Therefore, it is appealing to directly work on the compressed data without prior reconstruction of the original data. In this paper, a direct approach for modal analysis of damped systems is proposed by decomposing the compressed measurements with an appropriate dictionary. The damped free vibration function is adopted to form atoms in the dictionary for the following sparse decomposition. Compared with the normally used Fourier bases, the damped free vibration function spans a space with both the frequency and damping as the control variables. In order to efficiently search the enormous two-dimension dictionary with frequency and damping as variables, a two-step strategy is implemented combined with the Orthogonal Matching Pursuit (OMP) to determine the optimal atom in the dictionary, which greatly reduces the computation of the sparse decomposition. The performance of the proposed method is demonstrated by a numerical and an experimental example, and advantages of the method are revealed by comparison with another such kind method using POD technique.

해양에서 분리한 Vibrio vulnificus의 면역학적 특성 (Immunological Characterization of Vibrio vulnificus isolated from Marine Environment)

  • 정초록;전유진;허문수
    • 환경생물
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    • 제19권4호
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    • pp.302-312
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    • 2001
  • Immunoglobulin G was purified by 40% $(NH_4)_2SO_4$ precipitation, DEAE-Sephadex, Sephadex G-150 column chromatographies from rabbit antiserum against V. vulnificus ATCC 27562 O antigen and used for immunological test for V. vulnificus isolates. The profiles of cell lysate total protein and outer membrane protein from the isolates were analyzed by SDS-PAGE and densitometry. The overall profiles in all isolates were similar. Distict protein band was observed in comparison with V. parahaemolyticus. Western Blotting with rabbit Immunoglobulin G against cell lysates and OMP of V. vulnificus isolates showed a strong antigenic response to antigen 66, 60, 54, 48, 33 and 26 kDa which were common to all strains examined. The 26 kDa antigen showed V. vulnificus specific antigen in comparison with Vibrio parahaemolyticus. A sandwich enzyme-linked immunosorbent assay was developed by using rat anti-V. vulnificus ATCC 27562 polyclonal antibodies as capture antibody, a purified rabbit IgG antibody as detector antibody, and goat anti-rabbit IgG-alkaline phosphatase conjugate as developer antibody. When four V. vulnificus isolates were tested, the reactivity showed from 50 to 70% by sandwich ELISA.

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TOWARD NEXT GENERATION SOLAR CORONAGRAPH: DEVELOPMENT OF COMPACT DIAGNOSTIC CORONAGRAPH ON ISS

  • Cho, Kyungsuk;Bong, Suchan;Choi, Seonghwan;Yang, Heesu;Kim, Jihun;Baek, Jihye;Park, Jongyeob;Lim, Eun-Kyung;Kim, Rok-Soon;Kim, Sujin;Kim, Yeon-Han;Park, Young-Deuk;Clarke, S.W.;Davila, J.M.;Gopalswamy, N.;Nakariakov, V.M.;Li, B.;Pinto, R.F.
    • 천문학회보
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    • 제42권2호
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    • pp.66.2-66.2
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    • 2017
  • The Korea Astronomy and Space Science Institute plans to develop a coronagraph in collaboration with National Aeronautics and Space Administrative (NASA) and install it on the International Space Station (ISS). The coronagraph is an externally occulted one stage coronagraph with a field of view from 2.5 to 15 solar radii. The observation wavelength is approximately 400 nm where strong Fraunhofer absorption lines from the photosphere are scattered by coronal electrons. Photometric filter observation around this band enables the estimation of 2D electron temperature and electron velocity distribution in the corona. Together with the high time cadence (< 12 min) of corona images to determine the geometric and kinematic parameters of coronal mass ejections, the coronagraph will yield the spatial distribution of electron density by measuring the polarized brightness. For the purpose of technical demonstration, we intend to observe the total solar eclipse in 2017 August for the filter system and to perform a stratospheric balloon experiment in 2019 for the engineering model of the coronagraph. The coronagraph is planned to be installed on the ISS in 2021 for addressing a number of questions (e.g. coronal heating and solar wind acceleration) that are both fundamental and practically important in the physics of the solar corona and of the heliosphere.

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Proteome analysis between diverse phenotypes of Salmonella enterica subspecies enterica serovar Typhimurium (S. Typhimurium)

  • Shin, Gee-Wook;Cha, In-Seok;Lee, Woo-Won;Nho, Seong-Won;Park, Seong-Bin;Jang, Ho-Bin;Kim, Yong-Hwan;Jung, Tae-Sung
    • 대한수의학회지
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    • 제50권4호
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    • pp.285-295
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    • 2010
  • Protein expression patterns in Salmonella enterica subspecies enterica serovar Typhimurium (S. Typhimurium) strains with diverse phenotypes, such as phage type, antibiotic resistance pattern and plasmid profiles were examined. For detailed analysis of proteins expressed by different S. Typhimurium strains, protein fractions were divided into detergent-rich phase (DP) and aqueous phase (AP) using triton X-114 detergent. The two phases were subjected to two-dimensional gel electrophoresis (2-DE), followed by protein identification using peptide mass fingerprinting (PMF). In the results, PMF showed that DP fractions consisted mainly of outer membrane proteins, whereas the AP fractions included cytosolic proteins. Comparison of 2-DE profiles of DP did not show any distinct protein spots which could be correlated with phage type, antibiotic resistance pattern or plasmid profile. However, comparisons of 2-DE profiles of the AP revealed differences in the protein spots, which could be correlated with the plasmid profile and phage types. Among these protein spots, flagellin was specific for strains containing a 90 kb plasmid. Compared to DT193 phage type, three protein spots in the range of pI 5.0-5.5 and MW 8-15 kDa of AP 2-DE profiles were absent in the DT104 phage types. Additionally, a protein spot with PI in the range of 4.5-5.0 and molecular weight (MW) between 51-69 kDa was specific for phage type DT104, while a protein spot with pI in the range of 4.0-4.8 and MW between 18-20 kDa was specific for DT193 phage type. These protein spots may be useful for discriminating phage types of S. Typhimurium.

미꾸라지에서의 Edwardsiella tarda isolates의 항원성 비교 (Comparison of antigenicity of Edwardsiella tarda isolates in loach(Misgurnus mizloepis))

  • 이영;전려진;김명석;박경현;정현도
    • 한국어병학회지
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    • 제21권3호
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    • pp.201-208
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    • 2008
  • We compared the pathogenicity and antigenicity of two different Edwardsiella tarda (E. tarda) strains KFE and Edk-2 isolated in Korea and Japan respectively. In the pathogenicity analysis with challenge test against loach, E. tarda KFE isolate showed stronger pathogenicity compared to that of E. tarda Edk-2 isolate. The differences were also confirmed by the comparison of OMP (outer membrane protein) in SDSPAGE which showed three major bands, 41kDa, 37kDa and 30kDa, for E. tarda KFE isolates and two major bands, 41kDa and 30kDa, for E. tarda Edk-2 isolates. On the base of these results, we tried to determine the differences of antigenicities of these two isolates in loach which is one of the important species in freshwater aquaculture in Korea. Numbers of specific antibody secreting cells (SASC), appeared to be higher in loach immunized with FKC of E. tarda Edk-2 than loach immunized with FKC of E. tarda KFE. ELISPOT-assay for the comparison of antigenicity showed relatively high percentage of cross-reaction and implied the presence of some common epitopes in the antigens of these two E. tarda isolates.

MOLECULAR GAS AND RADIO JET INTERACTION: A CASE STUDY OF THE SEYFERT 2 AGN M51

  • MATSUSHITA, SATOKI;TRUNG, DINH-V;BOONE, FRDERIC;KRIPS, MELANIE;LIM, JEREMY;MULLER, SEBASTIEN
    • 천문학논총
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    • 제30권2호
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    • pp.439-442
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    • 2015
  • We observed multiple CO transition lines and the HCN(1-0) line at ~ 1" (~ 34 pc) or higher resolution toward the Seyfert 2 nucleus of M51 using the IRAM Plateau de Bure Interferometer (PdBI) and the Submillimeter Array (SMA). All the images show very similar overall molecular gas distribution; there are two discrete clouds at the eastern and western sides of the nucleus, and the western cloud exhibits an elongated distribution and velocity gradient along the radio jet. In addition, high HCN(1-0)/CO(1-0) brightness temperature ratios of about unity have been observed, especially along the radio jet, similar to those observed in shocked molecular gas in our Galaxy. This strongly indicates that the molecular gas along the jet is shocked, that the radio jet and the molecular gas are interacting, and the jet is entraining both diffuse (CO) and dense (HCN) molecular gas outwards from the circumnuclear region. This is the first clear imaging of the outflowing molecular gas entrained by the AGN jet, and showing the detailed physical status of outflowing molecular gas. Since a relatively high HCN(1-0)/CO(1-0) ratio has been observed in the high velocity wing of ultraluminous infrared galaxies, it can also be explained by a similar mechanism to those we describe here.

Ginsenoside Rg3 reduces the adhesion, invasion, and intracellular survival of Salmonella enterica serovar Typhimurium

  • Mechesso, Abraham F.;Quah, Yixian;Park, Seung-Chun
    • Journal of Ginseng Research
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    • 제45권1호
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    • pp.75-85
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    • 2021
  • Background: Invasive infections due to foodborne pathogens, including Salmonella enterica serovar Typhimurium, are prevalent and life-threatening. This study aimed to evaluate the effects of ginsenoside Rg3 (Rg3) on the adhesion, invasion, and intracellular survival of S. Typhimurium. Methods: The impacts of Rg3 on bacterial growth and host cell viability were determined using the time kill and the 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide assays, respectively. Gentamicin assay and confocal microscopic examination were undertaken to determine the effects of Rg3 on the adhesive and invasive abilities of S. Typhimurium to Caco-2 and RAW 264.7 cells. Quantitative reverse transcription polymerase chain reaction was performed to assess the expression of genes correlated with the adhesion, invasion, and virulence of S. Typhimurium. Results: Subinhibitory concentrations of Rg3 significantly reduced (p < 0.05) the adhesion, invasion, and intracellular survival of S. Typhimurium. Rg3 considerably reduced (p < 0.05) the bacterial motility as well as the release of nitrite from infected macrophages in a concentration-dependent manner. The expression of genes related to the adhesion, invasion, quorum sensing, and virulence of S. Typhimurium including cheY, hilA, OmpD, PrgK, rsgE, SdiA, and SipB was significantly reduced after Rg3 treatment. Besides, the compound downregulated rac-1 and Cdc-42 that are essential for actin remodeling and membrane ruffling, thereby facilitating Salmonella entry into host cells. This report is the first to describe the effects of Rg3 on "trigger" entry mechanism and intracellular survival S. Typhimurium. Conclusion: Rg3 could be considered as a supplement agent to prevent S. Typhimurium infection.

Horizon Run Spin-off Simulations for Studying the Formation and Expansion history of Early Universe

  • Kim, Yonghwi;Park, Jaehong;Park, Changbom;Kim, Juhan;Singh, Ankit;Lee, Jaehyun;Shin, Jihye
    • 천문학회보
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    • 제46권2호
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    • pp.45.1-45.1
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    • 2021
  • Horizon Run 5 (HR5) is a cosmological hydrodynamical simulation which captures the properties of the Universe on aGpc scale while achieving a resolution of 1kpc. This enormous dynamic range allows us to simultaneously capture the physics of the cosmic web on very large scales and account for the formation and evolution of dwarf galaxies on much smaller scales. On the back of a remarkable achievement of this, we have finished to run follow-up simulations which have 2 times larger volume than before and are expected to complementary to some limitations of previous HR simulations both for the study on the large scale features and the expansion history in a distant Universe. For these simulations, we consider the sub-grid physics of radiative heating/cooling, reionization, star formation, SN/AGN feedbacks, chemical evolution and the growth of super-massive blackholes. In order to do this project, we implemented a hybrid MPI-OpenMP version of the RAMSES code, 'RAMSES-OMP', which is specifically designed for modern many-core many thread parallel systems. These simulation successfully reproduce various observation result and provide a large amount of statistical samples of Lyman-alpha emitters and protoclusters which are important to understand the formation and expansion history of early universe. These are invaluable assets for the interpretation of current ΛCDM cosmology and current/upcoming deep surveys of the Universe, such as the world largest narrow band imaging survey, ODIN (One-hundred-square-degree Dark energy camera Imaging in Narrow band).

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Toxoplasma gondii의 활성화된 uracil 도입 과정에 미치는 pyrimidine 대사 억제제의 영향 (Effects of pyrimidine salvage inhibitors on uracil incorporation of Toxoplasma gondii)

  • 윤지혜;남호우
    • Parasites, Hosts and Diseases
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    • 제28권2호
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    • pp.79-84
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    • 1990
  • Pyrimidine salvage과정 및 de novo 합성과정에 작용하는 억제제들이 Toxeplasma gondii의 특이한 uracil 도입 과정에 미치는 영향을 방사능을 표지한 uracil과 thymidine을 사용하여 검토하였다. Dihydrofolate reductase (DHFR)에 작용하는 억제제인 methotreBate, pyrimethamine 그리고 thymidylate synthase(75)의 경쟁적 억제제인 fluoro-uridine, fluoro-dUMP, fluoro-uracil을 각각 처리한 경우, 그 농도에 비례적으로 uracil 표지가 감소 하였다. OMP decarboxylase에 작용하는 억제제인 azauridine에 대해서는 100$\mu$M 농도 이상에서도 uracil 표지량에 변화가 거의 없었다. 본 결과로부터 Toxoplasma가 uracil을 DNA로 도입할 때 dihydrofolate reductase와 thymidylate synthase가 관여하는 TMP biosynthesis 과정이 중요함을 알 수 있었고, uracil salvage 과정이 있는 다른 기생성 원충의 경우와 비교했을 때 Toxoplasmn에 있어서도 효율적인 다기능의 DHFR-75 system의 존재를 예상할 수 있었다. Thymidine 도입의 양상은 모든 경우에 있어 HL-60세포만의 경우와 Toxoplasma가 함께 배양된 HL-60세포에서 차이가 없었다. 이로부터 thymidine은 Toxoplasmn 성장을 반영하지 않음을 알 수 있었다. Toxoplasma의 특이한 uracil 표지와 Toxoplasma에 배타적인 thymidine 표지는 기생원충과 숙주세포의 성장, DNA합성 정도 및 이들 과정에 미치는 제제들의 영향을 쉽고 간단하게 연구할 수 있는 방법이 된다.

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