• 제목/요약/키워드: Network biology

검색결과 507건 처리시간 0.025초

Towards Integrated Pest Management of Rice in Korea

  • Lee, Seung-Chan
    • 한국응용곤충학회지
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    • 제31권3호
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    • pp.205-240
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    • 1992
  • In reality, it is a green revolution of the entire agricultural matrix in Korea that integrated pest control plays an important role in the possible breakthrough in rice self-sufficiency. In paddy agroecosystem as man-modified environment, rice is newly established every year by transplantation under diverse water regimes which affect a microclimate. Standing water benefits rice by regulating the microclimate, but it favors the multiplication of certain pets through the amelioration of the microclimate. Further, the introduction of high yielding varieties with the changing of cultural practices results in changing occurrence pattern of certain pests. In general, japonica type varieties lack genes resistant to most of the important pests and insect-borne virus diseases, whereas indica type possesses more genes conferring varietal resistance. Thus, this differences among indica type, form the background of different approaches to pest management. The changes in rice cultivation such as double cropping, growing high-yielding varieties requiring heavy fertilization, earlier transplanting, intensvie-spacing transplanting, and intensive pesticide use as a consequence of the adoption of improves rice production technology, have intensified the pest problems rather than reduced them. The cultivation of resistant varieties are highly effective to the pest, their long term stability is threathened because of the development of new biotypes which can detroy these varieties. So far, three biotypes of N. lugens are reported in Korea. Since each resistant variety is expected to maintain several years the sequential release of another new variety with a different gene at intervals is practised as a gene rotation program. Another approach, breeding multilines that have more than two genes for resistance in a variety are successfully demonstrated. The average annual rice losses during the last 15 years of 1977-’91 are 9.3% due to insect pests without chemical control undertaken, wehreas there is a average 2.4% despite farmers’insecticide application at the same period. In other words, the average annual losses are prvented by 6.9% when chemical control is properly employed. However, the continuous use of a same group of insecticides is followed by the development of pest resistance. Resistant development of C. suppressalis, L. striatellus and N. cincticeps is observed to organophosphorous insecticides by the mid-1960s, and to carbamates by the early 1970s in various parts of the country. Thus, it is apparent that a scheduled chemical control for rice production systems becomes uneconomical and that a reduction in energy input without impairing the rice yield, is necessarily improved through the implementation of integrated pest management systems. Nationwide pest forecasting system conducted by the government organization is a unique network of investigation for purpose of making pest control timely in terms of economic thresholds. A wise plant protection is expected to establish pest management systems in appropriate integration of resistant varieties, biological agents, cultural practices and other measures in harmony with minimizing use of chemical applications as a last weapon relying on economic thresholds.

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Systemic Approaches Identify a Garlic-Derived Chemical, Z-ajoene, as a Glioblastoma Multiforme Cancer Stem Cell-Specific Targeting Agent

  • Jung, Yuchae;Park, Heejoo;Zhao, Hui-Yuan;Jeon, Raok;Ryu, Jae-Ha;Kim, Woo-Young
    • Molecules and Cells
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    • 제37권7호
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    • pp.547-553
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    • 2014
  • Glioblastoma multiforme (GBM) is one of the most common brain malignancies and has a very poor prognosis. Recent evidence suggests that the presence of cancer stem cells (CSC) in GBM and the rare CSC subpopulation that is resistant to chemotherapy may be responsible for the treatment failure and unfavorable prognosis of GBM. A garlic-derived compound, Z-ajoene, has shown a range of biological activities, including anti-proliferative effects on several cancers. Here, we demonstrated for the first time that Z-ajoene specifically inhibits the growth of the GBM CSC population. CSC sphere-forming inhibition was achieved at a concentration that did not exhibit a cytotoxic effect in regular cell culture conditions. The specificity of this inhibitory effect on the CSC population was confirmed by detecting CSC cell surface marker CD133 expression and biochemical marker ALDH activity. In addition, stem cell-related mRNA profiling and real-time PCR revealed the differential expression of CSC-specific genes, including Notch, Wnt, and Hedgehog, upon treatment with Z-ajoene. A proteomic approach, i.e., reverse-phase protein array (RPPA) and Western blot analysis, showed decreased SMAD4, p-AKT, 14.3.3 and FOXO3A expression. The protein interaction map (http://string-db.org/) of the identified molecules suggested that the AKT, ERK/p38 and $TGF{\beta}$ signaling pathways are key mediators of Z-ajoene's action, which affects the transcriptional network that includes FOXO3A. These biological and bioinformatic analyses collectively demonstrate that Z-ajoene is a potential candidate for the treatment of GBM by specifically targeting GBM CSCs. We also show how this systemic approach strengthens the identification of new therapeutic agents that target CSCs.

Mitochondrial Cytochrome b Sequence Variations and Population Structure of Siberian Chipmunk (Tamias sibiricus) in Northeastern Asia and Population Substructure in South Korea

  • Lee, Mu-Yeong;Lissovsky, Andrey A.;Park, Sun-Kyung;Obolenskaya, Ekaterina V.;Dokuchaev, Nikolay E.;Zhang, Ya-Ping;Yu, Li;Kim, Young-Jun;Voloshina, Inna;Myslenkov, Alexander;Choi, Tae-Young;Min, Mi-Sook;Lee, Hang
    • Molecules and Cells
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    • 제26권6호
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    • pp.566-575
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    • 2008
  • Twenty-five chipmunk species occur in the world, of which only the Siberian chipmunk, Tamias sibiricus, inhabits Asia. To investigate mitochondrial cytochrome b sequence variations and population structure of the Siberian chipmunk in northeastern Asia, we examined mitochondrial cytochrome b sequences (1140 bp) from 3 countries. Analyses of 41 individuals from South Korea and 33 individuals from Russia and northeast China resulted in 37 haplotypes and 27 haplotypes, respectively. There were no shared haplotypes between South Korea and Russia - northeast China. Phylogenetic trees and network analysis showed 2 major maternal lineages for haplotypes, referred to as the S and R lineages. Haplotype grouping in each cluster was nearly coincident with its geographic affinity. In particular, 3 distinct groups were found that mostly clustered in the northern, central and southern parts of South Korea. Nucleotide diversity of the S lineage was twice that of lineage R. The divergence between S and R lineages was estimated to be 2.98-0.98 Myr. During the ice age, there may have been at least 2 refuges in South Korea and Russia - northeast China. The sequence variation between the S and R lineages was 11.3% (K2P), which is indicative of specific recognition in rodents. These results suggest that T. sibiricus from South Korea could be considered a separate species. However, additional information, such as details of distribution, nuclear genes data or morphology, is required to strengthen this hypothesis.

The Significance of SDF-1α-CXCR4 Axis in in vivo Angiogenic Ability of Human Periodontal Ligament Stem Cells

  • Bae, Yoon-Kyung;Kim, Gee-Hye;Lee, Jae Cheoun;Seo, Byoung-Moo;Joo, Kyeung-Min;Lee, Gene;Nam, Hyun
    • Molecules and Cells
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    • 제40권6호
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    • pp.386-392
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    • 2017
  • Periodontal ligament stem cells (PDLSCs) are multipotent stem cells derived from periodontium and have mesenchymal stem cell (MSC)-like characteristics. Recently, the perivascular region was recognized as the developmental origin of MSCs, which suggests the in vivo angiogenic potential of PDLSCs. In this study, we investigated whether PDLSCs could be a potential source of perivascular cells, which could contribute to in vivo angiogenesis. PDLSCs exhibited typical MSC-like characteristics such as the expression pattern of surface markers (CD29, CD44, CD73, and CD105) and differentiation potentials (osteogenic and adipogenic differentiation). Moreover, PDLSCs expressed perivascular cell markers such as NG2, ${\alpha}-smooth$ muscle actin, platelet-derived growth factor receptor ${\beta}$, and CD146. We conducted an in vivo Matrigel plug assay to confirm the in vivo angiogenic potential of PDLSCs. We could not observe significant vessel-like structures with PDLSCs alone or human umbilical vein endothelial cells (HUVECs) alone at day 7 after injection. However, when PDLSCs and HUVECs were co-injected, there were vessel-like structures containing red blood cells in the lumens, which suggested that anastomosis occurred between newly formed vessels and host circulatory system. To block the $SDF-1{\alpha}$ and CXCR4 axis between PDLSCs and HUVECs, AMD3100, a CXCR4 antagonist, was added into the Matrigel plug. After day 3 and day 7 after injection, there were no significant vessel-like structures. In conclusion, we demonstrated the perivascular characteristics of PDLSCs and their contribution to in vivo angiogenesis, which might imply potential application of PDLSCs into the neovascularization of tissue engineering and vascular diseases.

습지 기능 평가의 동향 분석 및 제언 (An analysis of trends in wetland function assessments and further suggestions)

  • 홍문기;김재근
    • 한국습지학회지
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    • 제19권1호
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    • pp.1-15
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    • 2017
  • 습지를 대상으로 한 기능 평가는 습지의 현 상태를 면밀히 파악하기 위한 기본 단계일 뿐만 아니라 습지를 '우리에게 수많은 편익을 제공하는 하나의 자원이자 재화'로 인식하는 '생태계 서비스' 개념의 토대가 되는 중요한 과정이다. 20세기말 미국에서부터 시작된 습지 기능 평가는 WET, EMAP-wetlands 그리고 HGM의 순서로 발달하였다. 21세기에 접어들며 보다 간편하고 신속하게 수행 가능한 RAM이 기능 평가 개발의 주류를 이루기 시작하였다. 그 이후에는 세 가지 수준의 위계를 갖는 기능 평가의 체계가 갖추어졌으며 기능 평가의 대상과 목적 등에 따라 전략적으로 활용되는 형태로 발전하였다. 우리나라 또한 미국의 HGM과 RAM을 토대로 하여 일부 항목과 내용들을 개선하는 형태로 한 기능 평가가 2001년부터 수행되기 시작하였다. 이후 HGM과 RAM의 약점과 단점을 보완할 뿐만 아니라 우리나라의 환경 특성 및 실정에 맞게 개선된 형태의 기능 평가 도구들이 개발되기 시작하였다. 국내외 습지 기능 평가 연구 동향파악 및 선진국과의 비교 분석을 통해 국내 기능 평가에 있어 우선적으로 보완이 필요한 것들로 다음의 사항들을 제안하는 바이다: 1) 조류와 같이 우리나라의 현실을 고려한 지시자를 활용한 기능 평가 도구가 필요하다. 2) 우리나라 습지의 많은 면적을 차지하고 있는 연안습지를 대상으로 하는 최적화된 기능 평가 도구 개발이 필요하다. 3) 연구자 및 정책담당자들 간의 소통과 협력 공조를 유도할 수 있는 네트워크 구축과 확장이 필요하다.

무지개 송어(Oncorhynchus mykiss) 중추신경계(CNS)에 있어서 세포특징과 Nitric Oxide Synthase (Cell characterization and Nitric Oxide Synthase in the Centeral Nervous System of the Rainbow Trout(Oncorhynchus mykiss))

  • 장선일;최민순;김영길
    • 한국어병학회지
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    • 제7권1호
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    • pp.63-70
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    • 1994
  • 최근 포유동물에서 nitric oxide(NO)는 중추신경계(CNS)의 기능에 있어서 매우 중요한 역할을 하는 것으로 알려져왔다. NO는 NO synthase(NOS)에 의해 L-arginine으로부터 합성된다. 본 연구에서 저자 등은 무지개송어(Oncorhynchus mykiss)의 CNS에서 NOS활성을 측정했고, 소교세포와 신경교성상 세포 및 회돌기교세포의 특징을 기술하였다. CNS에서 세교세포는 포유동물에서와 유사한 큰 소교세포(large microglia : LM)와 세포질이 매우 적은 소형 소교세포(small microglia : SM)등 2가지 형태적 특징이 관찰되었다. CNS에서 신경교성상 세포는 모세섬유가 연결되지 않은 망상 구조의 형태를 보였고, 희돌기교세포는 신경교성상세포보다 더 세포질이 밀집되어 있었다. 저자등은 무지개송어의 CNS에서 NOS의 활성을 측정하였는데, 그 양은 $1.04{\pm}0.12\;pg/min/mg$이었고, $N^{G}MMA$와 EGTA에 의해 가역적 또는 비가역적으로 억제되었다. 이들의 결과는 CNS에서 L-argine으로부터 NO형성이 calcium에 의존적이고, 초기 진화 기원의 경로를 시사해 주었다.

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Kinesin 모터 단백질의 조절 기전 (The Regulation Mechanisms of Kinesin Motor Proteins)

  • 박상준;석정수;문일수;석대현
    • 생명과학회지
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    • 제27권7호
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    • pp.840-848
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    • 2017
  • 세포내 수송 기구는 세포의 작용과 생존에 필수적이다. 이러한 세포내 수송은 긴 미세소관을 따라서 운반체를 운반하는 미세소관 의존 분자 모터 단백질인 kinesin과 cytoplasmic dynein에 의하여 이루어진다. Kinesin은 ATP 의존적으로 미세소관의 plus-end방향으로 이동하는 모터 단백질로 세포내 소기관, 분비소포, RNA 복합체, 단백질 복합체들을 수송한다. Kinesins에 의한 다양한 운반체의 수송의 이상은 세포의 기능 이상과 연관된다. Kinesins에 의한 운반체 수송의 기본 단계는: 운반체 혹은 adaptor 단백질과의 결합, kinesin 기능 활성화와 미세소관을 따라서 이동, 그리고 올바른 위치에서 운반체와의 분리 단계로 나뉘어 진다. 최근의 연구결과들에서 kinesin 모터 기능 활성화, 운반체와의 결합, 운반체와의 해리 기전이 확인되고 있으며 세포내 운반체 수송은 kinesin과 운반체를 연결하는 adaptor 단백질에 의하여서도 조절된다. 단백질 인산화 효소, 탈 인산화 효소를 포함하는 kinesin 모터 활성 조절 단백질들은 kinesin의 인산화 혹은 탈 인산화를 통하여 직접적으로 세포내 수송을 조절하거나, c-Jun NH-terminal kinase-interacting proteins (JIPs)와 같은 adaptor 단백질들과 미세소관의 간접적 수식을 통하여 세포내 수송을 조절하기도 한다. 이러한 연구결과들은 세포의 기능과 형태 유지에 관여하는 kinesin에 의한 다양한 세포내 수송 조절 기전을 이해하는데 기초적인 토대가 된다. 또한 각각의 kinesin에 대한 조절 기전을 밝히는 것은 세포생물학과 신경생리학을 이해하는데 중요하므로 본 종설에서는 kinesin에 의한 세포내 수송을 조절하는 단백질과 kinesin과 수송체와의 결합이 어떻게 조절되는지를 고찰하고자 한다.

Heterologous Expression of Yeast Prepro-$\alpha$-factor in Rat $GH_3$ Cells

  • Lee, Myung-Ae;Cheong, Kwang-Ho;Han, Sang-Yeol;Park, Sang-Dai
    • Animal cells and systems
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    • 제4권2호
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    • pp.157-163
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    • 2000
  • Yeast pheromone a-factor is a 13-amino acid peptide hormone that is synthesized as a part of a larger precursor, prepro-$\alpha$-factor, consisting of a signal peptide and a proregion of 64 amino acids. The carboxy-terminal half of the precursor contains four tandem copies of mature $\alpha$-factor. To investigate the molecular basis of intracellular sorting, proteolytic processing, and storage of the peptide hormone, yeast prepro-$\alpha$-factor precursors were heterologously expressed in rat pituitary $GH_3 cells. When cells harboring the precursor were metabolically labeled, a species of approximately 27 kD appeared inside the cells. Digestion with peptide: N-glycosidase F (PNG-F) shifted the molecular mass to a 19 kD, suggesting that the 27 kD protein was the glycosylated form as in yeast cells. The nascent polypeptide is efficiently targeted to the ER in the $GH_3 cells, where it undergoes cleavage of its signal peptide and core glycosylation to generate glycosylated pro-a-factor. To look at the post ER intracellular processing, the pulse-labelled cells were chased up to 2 hrs. The nascent propeptides disappeared from the cells at a half life of 30 min and only 10-25% of the newly synthesized, unprocessed precursors were stored intracellularly after the 2 h chase. However, about 20% of the pulse-labeled pro-$\alpha$-factor precursors were secreted into the medium in the pro-hormone form. With increasing chase time, the intracellular level of propeptide decreased, but the amount of secreted propeptide could not account for the disappearance of intracellular propeptide completely. This disappearance was insensitive to lysosomotropic agents, but was inhibited at $16^{circ}C or 20^{\circ}C$, suggesting that the turnover of the precursors was not occurring in the secretory pathway to trans Golgi network (TGN) or dependent on acidic compartments. From these results, it is concluded that a pan of these heterologous precursors may be processed at its paired dibasic sites by prohormone processing enzymes located in TGN/secretpry vesicles producing small peptides, and that the residual unprocessed precursors may be secreted into the medium rather than degraded intracellularly.

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Radix et Rhizoma Ginseng chemoprevents both initiation and promotion of cutaneous carcinoma by enhancing cell-mediated immunity and maintaining redox homeostasis

  • Yu, Suyun;Wang, Siliang;Huang, Shuai;Wang, Wei;Wei, Zhonghong;Ding, Yushi;Wang, Aiyun;Huang, Shile;Chen, Wenxing;Lu, Yin
    • Journal of Ginseng Research
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    • 제44권4호
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    • pp.580-592
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    • 2020
  • Background: Radix et Rhizoma Ginseng (thereafter called ginseng) has been used as a medicinal herb for thousands of years to maintain people's physical vitality and is also a non-organ-specific cancer preventive and therapeutic traditional medicine in several epidemiologic and preclinical studies. Owing to few toxic side effects and strong enhancement on body immunity, ginseng has admirable application potential and value in cancer chemoprevention. The study aims at investigating the chemopreventive effects of ginseng on cutaneous carcinoma and the underlying mechanisms. Methods: The mouse skin cancer model was induced by 7,12-dimethylbenz[a]anthracene/12-O-tetradecanoylphorbol-13-acetate. Ultraperformance liquid chromatography/mass spectrometry was used for identifying various ginsenosides, the main active ingredients of ginseng. Comprehensive approaches (including network pharmacology, bioinformatics, and experimental verification) were used to explore the potential targets of ginseng. Results: Ginseng treatment inhibited cutaneous carcinoma in terms of initiation and promotion. The content of Rb1, Rb2, Rc, and Rd ginsenosides was the highest in both mouse blood and skin tissues. Ginseng and its active components well maintained the redox homeostasis and modulated the immune response in the model. Specifically, ginseng treatment inhibited the initiation of skin cancer by enhancing T-cell-mediated immune response through upregulating HSP27 expression and inhibited the promotion of skin cancer by maintaining cellular redox homeostasis through promoting nuclear translocation of Nrf2. Conclusion: According to the study results, ginseng can be potentially used for cutaneous carcinoma as a chemopreventive agent by enhancing cell-mediated immunity and maintaining redox homeostasis with multiple components, targets, and links.

Mitochondrial Genetic Diversity and Phylogenetic Relationships of Siberian Flying Squirrel(Pteromys volans) Populations

  • Lee, Mu-Yeong;Park, Sun-Kyung;Hong, Yoon-Jee;Kim, Young-Jun;Voloshina, Inna;Myslenkov, Alexander;Saveljev, Alexander P.;Choi, Tae-Young;Piao, Ren-Zhu;An, Jung-Hwa;Lee, Mun-Han;Lee, Hang;Min, Mi-Sook
    • Animal cells and systems
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    • 제12권4호
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    • pp.269-277
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    • 2008
  • Siberian flying squirrel, an endangered species in South Korea, is distributed through major mountain regions of South Korea. The number of Siberian flying squirrel(Pteromys volans) in South Korea has decreased and their habitats are fragmented and isolated because of anthropogenic activities. So far no molecular genetic data has, however, been available for their conservation and management. To obtain better information concerning genetic diversity and phylogenetic relationships of the Siberian flying squirrel in South Korea, we examined 14 individuals from South Korea, 7 individuals from Russia, and 5 individuals from northeastern China along with previously published 29 haplotypes for 1,140 bp of the mtDNA cytochrome b gene. The 14 new individuals from South Korea had 7 haplotypes which were not observed in the regions of Russia and Hokkaido. The level of genetic diversity(0.616%) in the South Korean population was lower than that in eastern Russia(0.950%). The geographical distribution of mtDNA haplotypes and reduced median network confirmed that there are three major lineages of Siberian flying squirrel, occupying; Far Eastern, northern Eurasia, and the island of Hokkaido. The South Korean population only slightly distinct from the Eurasia, and eastern Russian population, and is part of the lineage Far Eastern. Based on these, we suggest that the South Korean population could be considered to belong to one partial ESU(Far Eastern) of three partial ESUs but a different management unit. However, the conservation priorities should be reconfirmed by nuclear genetic marker and ecological data.