• Journal of Information Processing Systems
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• v.12 no.4
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• pp.724-740
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• 2016

The performance issues of screening large database compounds and multiple query compounds in virtual screening highlight a common concern in Chemoinformatics applications. This study investigates these problems by choosing group fusion as a pilot model and presents efficient parallel solutions in parallel platforms, specifically, the multi-core architecture of CPU and many-core architecture of graphical processing unit (GPU). A study of sequential group fusion and a proposed design of parallel CUDA group fusion are presented in this paper. The design involves solving two important stages of group fusion, namely, similarity search and fusion (MAX rule), while addressing embarrassingly parallel and parallel reduction models. The sequential, optimized sequential and parallel OpenMP of group fusion were implemented and evaluated. The outcome of the analysis from these three different design approaches influenced the design of parallel CUDA version in order to optimize and achieve high computation intensity. The proposed parallel CUDA performed better than sequential and parallel OpenMP in terms of both execution time and speedup. The parallel CUDA was 5-10x faster than sequential and parallel OpenMP as both similarity search and fusion MAX stages had been CUDA-optimized.

• Journal of Korea Society of Industrial Information Systems
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• v.8 no.4
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• pp.26-30
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• 2003

The Lanczos algorithm is the most commonly used in approximating a small number of extreme eigenvalues for symmetric large sparse matrices. Global communications in MP(Message Passing) parallel computer decrease the computation speed. In this paper, we introduce the s-step Lanczos method, and s-step method generates reduction matrices which are similar to reduction matrices generated by the standard Lanczos method. One iteration of the s-step Lanczos algorithm corresponds to s iterations of the standard Lanczos algorithm. The s-step method has the minimized global communication and has the superior parallel properties to the standard method. These algorithms are implemented on Cray T3E and performance results are presented.

• Journal of the Institute of Electronics and Information Engineers
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• v.53 no.6
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• pp.80-87
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• 2016

We propose a parallel mesh smoothing algorithm using graph coloring and OpenMP library for shared memory many core computer architectures. The proposed algorithm partitions a mesh into independent sets and performs a parallel mesh smoothing using OpenMP library. We study the effect of using various graph coloring and color reordering algorithms on the efficiency of performing the proposed parallel mesh smoothing algorithm. We also investigate the influence of using various OpenMP loop scheduling methods on the parallel mesh smoothing efficiency.

• Journal of KIISE:Computer Systems and Theory
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• v.34 no.4
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• pp.145-157
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• 2007

OpenMP is an attractive parallel programming model for a chip multiprocessor because there is no standard parallel programming method for a chip multiprocessor and it is easy to write a parallel program in OpenMP. Then, chip multiprocessor systems can have various architectures according to target application programs. So, we need to implement OpenMP in different way for each system. In this paper, we propose the implementation and the effective translation of major OpenMP directives for a chip multiprocessor without using OS to improve the performance without using special hardware and without extending the OpenMP directives. We present the experimental results on our target platform CT3400.

• Journal of Industrial Technology
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• v.14
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• pp.19-28
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• 1994

We can get a tridiagonal block Toeplitz linear system by the finite difference approximation of 2-D Poisson equation. To exploit the nice property of this linear equation, we transform the equation into a Lyapunov equation and apply DST (discrete sine transform) to get diagonal matrix based Lyapunov equation. DST can be performed using FFT, which enables high-speed computaion. All the computations are performed on an SIMD parallel computer, the MasPar MP-2 with 4,096 processing elements. In this paper, parallel algorithm, mapping method of the algorithm onto the MP-2, and timing results are presented.

• Journal of the Korea Society of Computer and Information
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• v.13 no.2
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• pp.11-17
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• 2008

The net shape effects by the various vectors in underwater. Each particle of the net calculating the effect of all vectors augments an accuracy and reality. But, the time complexity becomes larger because of huge calculation. The previous techniques reduced a physics reality. And embodied the underwater virtual reality which augments visual reality with simulation. In this paper, parallel processing the particles, it embodied the simulation which is satisfied a physical reality and time reality. The parallel processing used the OpenMP, and the reality graphic expression used the OpenGL. The simulation which this paper Proposes will be the possibility becoming the fundamental data for a model analysis or a specialist system from game and marine field.

• International Journal of Internet, Broadcasting and Communication
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• v.11 no.3
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• pp.1-7
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• 2019

Previously, parallel computing was mainly used in areas requiring high computing performance, but nowadays, multicore CPUs and GPUs have become widespread, and parallel programming advantages can be obtained even in a PC environment. Various parallel programming frameworks using multicore CPUs such as OpenMP and PPL have been announced. Nvidia and AMD have developed parallel programming platforms and APIs for program developers to take advantage of multicore GPUs on their graphics cards. In this paper, we develop digital image transformation programs that runs on each of the major parallel programming frameworks, and measure the execution time. We analyze the characteristics of each framework through the execution time comparison. Also a constant K indicating the ratio of program execution time between different parallel computing environments is presented. Using this, it is possible to predict rough execution time without implementing a parallel program.

• Journal of IKEEE
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• v.17 no.3
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• pp.371-377
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• 2013

This thesis propose an efficient parallel structure method for implementing a FAST and BRIEF algorithm based Augmented Reality. SURF algorithm that is well known in the object recognition algorithms is robust in object recognition. However, there is a disadvantage for real time operation because, SURF implementation requires a lot of computation. Therefore, we used a FAST and BRIEF algorithm for object recognition, and we improved Conventional Parallel Structure based on OpenMP Library. As a result, it achieves a 70%~100% improvement in execution time on the embedded system.

• Journal of applied mathematics & informatics
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• v.41 no.6
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• pp.1317-1326
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• 2023

Today's computers, desktops and laptops were build with multi-core architecture. Developing and running serial programs in this multi-core architecture fritters away the resources and time. Parallel programming is the only solution for proper utilization of resources available in the modern computers. The major challenge in the multi-core environment is the designing of parallel algorithm and performance analysis. This paper describes the design and performance analysis of parallel algorithm by taking the Knight Tour problem as an example using OpenMP interface. Comparison has been made with performance of serial and parallel algorithm. The comparison shows that the proposed parallel algorithm achieves good performance compared to serial algorithm.

• Journal of Advanced Navigation Technology
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• v.21 no.5
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• pp.485-490
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• 2017

In this paper, we propose a technique for high speed removal of sea-fog using a graphic processor. This technique uses a host processor(CPU) and several graphics processors(GPU) capable of parallel processing to remove sea-fog from the input image. In the process of removing sea-fog, the dark channel extraction, the maximum brightness channel extraction, and the calculation of the transmission are performed by the host processor, and the process of refining the transmission by applying the bidirectional filter is performed in parallel through the graphic processor. To verify the proposed parallel processing method, three NVIDIA GTX 1070 GPUs were used to construct the verification environment. As a result, it takes about 140ms when implemented with one graphics processor, and 26ms when implemented using OpenMP and multiple GPGPUs. The proposed a parallel processing algorithm based on the graphics processor unit can be used for safe navigation, port control and monitoring system.