• 제목/요약/키워드: Laboratory scale

검색결과 2,314건 처리시간 0.028초

Systems-Level Analysis of Genome-Scale In Silico Metabolic Models Using MetaFluxNet

  • Lee, Sang-Yup;Woo, Han-Min;Lee, Dong-Yup;Choi, Hyun-Seok;Kim, Tae-Yong;Yun, Hong-Seok
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제10권5호
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    • pp.425-431
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    • 2005
  • The systems-level analysis of microbes with myriad of heterologous data generated by omics technologies has been applied to improve our understanding of cellular function and physiology and consequently to enhance production of various bioproducts. At the heart of this revolution resides in silico genome-scale metabolic model, In order to fully exploit the power of genome-scale model, a systematic approach employing user-friendly software is required. Metabolic flux analysis of genome-scale metabolic network is becoming widely employed to quantify the flux distribution and validate model-driven hypotheses. Here we describe the development of an upgraded MetaFluxNet which allows (1) construction of metabolic models connected to metabolic databases, (2) calculation of fluxes by metabolic flux analysis, (3) comparative flux analysis with flux-profile visualization, (4) the use of metabolic flux analysis markup language to enable models to be exchanged efficiently, and (5) the exporting of data from constraints-based flux analysis into various formats. MetaFluxNet also allows cellular physiology to be predicted and strategies for strain improvement to be developed from genome-based information on flux distributions. This integrated software environment promises to enhance our understanding on metabolic network at a whole organism level and to establish novel strategies for improving the properties of organisms for various biotechnological applications.

Mechanical buckling of FG-CNTs reinforced composite plate with parabolic distribution using Hamilton's energy principle

  • Tayeb, Tayeb Si;Zidour, Mohamed;Bensattalah, Tayeb;Heireche, Houari;Benahmed, Abdelillah;Bedia, E.A. Adda
    • Advances in nano research
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    • 제8권2호
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    • pp.135-148
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    • 2020
  • The incorporation of carbon nanotubes in a polymer matrix makes it possible to obtain nanocomposite materials with exceptional properties. It's in this scientific background that this work was based. There are several theories that deal with the behavior of plates, in this research based on the Mindlin-Reissner theory that takes into account the transversal shear effect, for analysis of the critical buckling load of a reinforced polymer plate with parabolic distribution of carbon nanotubes. The equations of the model are derived and the critical loads of linear and parabolic distribution of carbon nanotubes are obtained. With different disposition of nanotubes of carbon in the polymer matrix, the effects of different parameters such as the volume fractions, the plate geometric ratios and the number of modes on the critical load buckling are analysed and discussed. The results show that the critical buckling load of parabolic distribution is larger than the linear distribution. This variation is attributed to the concentration of reinforcement (CNTs) at the top and bottom faces for the X-CNT type which make the plate more rigid against buckling.

Multi-scale heat conduction models with improved equivalent thermal conductivity of TRISO fuel particles for FCM fuel

  • Mouhao Wang;Shanshan Bu;Bing Zhou;Zhenzhong Li;Deqi Chen
    • Nuclear Engineering and Technology
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    • 제55권3호
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    • pp.1140-1151
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    • 2023
  • Fully Ceramic Microencapsulated (FCM) fuel is emerging advanced fuel material for the future nuclear reactors. The fuel pellet in the FCM fuel is composed of matrix and a large number of TRistructural-ISOtopic (TRISO) fuel particles which are randomly dispersed in the SiC matrix. The minimum layer thickness in a TRISO fuel particle is on the order of 10-5 m, and the length of the FCM pellet is on the order of 10-2 m. Hence, the heat transfer in the FCM pellet is a multi-scale phenomenon. In this study, three multi-scale heat conduction models including the Multi-region Layered (ML) model, Multi-region Non-layered (MN) model and Homogeneous model for FCM pellet were constructed. In the ML model, the random distributed TRISO fuel particles and coating layers are completely built. While the TRISO fuel particles with coating layers are homogenized in the MN model and the whole fuel pellet is taken as the homogenous material in the Homogeneous model. Taking the results by the ML model as the benchmark, the abilities of the MN model and Homogenous model to predict the maximum and average temperature were discussed. It was found that the MN model and the Homogenous model greatly underestimate the temperature of TRISO fuel particles. The reason is mainly that the conventional equivalent thermal conductivity (ETC) models do not take the internal heat source into account and are not suitable for the TRISO fuel particle. Then the improved ETCs considering internal heat source were derived. With the improved ETCs, the MN model is able to capture the peak temperature as well as the average temperature at a wide range of the linear powers (165 W/cm~ 415 W/cm) and the packing fractions (20%-50%). With the improved ETCs, the Homogenous model is better to predict the average temperature at different linear powers and packing fractions, and able to predict the peak temperature at high packing fractions (45%-50%).

Application of Topical Madecassoside Cream in Dogs and Cats with Skin Diseases

  • Ro, Woong-bin;Kang, Min-hee;Song, Doo-won;Kim, Heyong-seok;Lee, Ga-won;Kang, Hyun-min;Kim, Jong-won;Park, Su-bin;Jeon, Jin-ha;Keum, Jong-seon;Park, Won-keun;Ko, Jin;Sim, Sue-kyoung;Lee, Hyun-Jung;Park, Hee-myung
    • 한국임상수의학회지
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    • 제38권2호
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    • pp.56-62
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    • 2021
  • Madecassoside, an active ingredient extracted from Centella asiatica, is used for treatment of various skin disorders in humans. However, the effect of madecassoside on the skin of dogs and cats has not been studied yet. The purpose of this study was to evaluate clinical efficacy of topical madecassoside cream in dogs and cats with skin diseases. A total of twenty-one dogs and ten cats with various skin diseases were included in the study. The 1% topical madecassoside cream was applied to the animal's skin lesion at least once a day for 7 days, and the skin condition was evaluated before the application of madecassoside cream (day 0) and 7 days after the application (day 7). The skin condition was scored by five clinical indices: canine atopic dermatitis extent and severity index-4 (CADESI-4), coat condition, pruritus, scale, and general condition. In dogs, all five clinical indices (CADESI-4, coat condition, pruritus, scale, and general condition) were significantly decreased on day 7 compared to those on day 0 (p < 0.0001, p < 0.05, p < 0.001, p < 0.01, and p < 0.05, respectively). In cats, the CADESI-4 and scale were significantly decreased on day 7 compared to those on day 0 (p < 0.01 and p < 0.05, respectively). No adverse effects were observed during the trial period in the dogs and cats included in this study. The results of this study demonstrate that the topical madecassoside cream is applicable to skin lesions in dogs and cats.

e-Science Technologies in Synchrotron Radiation Beamline - Remote Access and Automation (A Case Study for High Throughput Protein Crystallography)

  • Wang Xiao Dong;Gleaves Michael;Meredith David;Allan Rob;Nave Colin
    • Macromolecular Research
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    • 제14권2호
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    • pp.140-145
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    • 2006
  • E-science refers to the large-scale science that will increasingly be carried out through distributed global collaborations enabled by the Internet. The Grid is a service-oriented architecture proposed to provide access to very large data collections, very large scale computing resources and remote facilities. Web services, which are server applications, enable online access to service providers. Web portal interfaces can further hide the complexity of accessing facility's services. The main use of synchrotron radiation (SR) facilities by protein crystallographers is to collect the best possible diffraction data for reasonably well defined problems. Significant effort is therefore being made throughout the world to automate SR protein crystallography facilities so scientists can achieve high throughput, even if they are not expert in all the techniques. By applying the above technologies, the e-HTPX project, a distributed computing infrastructure, was designed to help scientists remotely plan, initiate and monitor experiments for protein crystallographic structure determination. A description of both the hardware and control software is given together in this paper.

Genome Scale Protein Secondary Structure Prediction Using a Data Distribution on a Grid Computing

  • Cho, Min-Kyu;Lee, Soojin;Jung, Jin-Won;Kim, Jai-Hoon;Lee, Weontae
    • 한국생물물리학회:학술대회논문집
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    • 한국생물물리학회 2003년도 정기총회 및 학술발표회
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    • pp.65-65
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    • 2003
  • After many genome projects, algorithms and software to process explosively growing biological information have been developed. To process huge amount of biological information, high performance computing equipments are essential. If we use the remote resources such as computing power, storages etc., through a Grid to share the resources in the Internet environment, we will be able to obtain great efficiency to process data at a low cost. Here we present the performance improvement of the protein secondary structure prediction (PSIPred) by using the Grid platform, distributing protein sequence data on the Grid where each computer node analyzes its own part of protein sequence data to speed up the structure prediction. On the Grid, genome scale secondary structure prediction for Mycoplasma genitalium, Escherichia coli, Helicobacter pylori, Saccharomyces cerevisiae and Caenorhabditis slogans were performed and analyzed by a statistical way to show the protein structural deviation and comparison between the genomes. Experimental results show that the Grid is a viable platform to speed up the protein structure prediction and from the predicted structures.

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Effect of confining stress on representative elementary volume of jointed rock masses

  • Wu, Na;Liang, Zhengzhao;Li, Yingchun;Qian, Xikun;Gong, Bin
    • Geomechanics and Engineering
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    • 제18권6호
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    • pp.627-638
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    • 2019
  • Estimation of representative elementary volume (REV) of jointed rock masses is critical to predict the mechanical behavior of field-scale rock masses. The REV of jointed rock masses at site is strongly influenced by stress state. The paper proposed a method to systematically studied the influence of confining stress on the REV of jointed rock masses with various strengths (weak, medium and strong), which were sourced from the water inlet slope of Xiaowan Hydropower Station, China. A finite element method considering material heterogeneity was employed, a series of two-dimensional (2D) models was established based on the Monte-Carlo method and a lot of biaxial compressive tests were conducted. Numerical results showed that the REV of jointed rock masses presented a step-like reduction as the normalized confining stress increased. Confining stress weakened the size effect of jointed rock masses, indicating that the REV determined under uniaxial compression test can be reasonably taken as the REV of jointed rock masses under complexed in-situ stress environment.

Rubbing Process Evaluation Method for The LCD Panel

  • Honoki, Hideyuki;Sakai, Kaoru;Kawabe, Shun'Ichi;Nakasu, Nobuaki
    • 한국정보디스플레이학회:학술대회논문집
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    • 한국정보디스플레이학회 2002년도 International Meeting on Information Display
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    • pp.115-117
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    • 2002
  • In order to realize a stable rubbing process for the liquid crystal panel, the authors investigated the quantitative evaluation method of rubbing process uniformity. The proposed method focuses on the relationship between the image quality of the LCD panel for gray scale images and the rubbing uniformity. The proposed method indicates rubbing uniformity using quantitative parameters of spots and hairlines on the LCD panel.

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12-year LIDAR Observations of Tropospheric Aerosol over Hefei (31.9°N, 117.2°E), China

  • Wu, Decheng;Zhou, Jun;Liu, Dong;Wang, Zhenzhu;Zhong, Zhiqing;Xie, Chenbo;Qi, Fudi;Fan, Aiyuan;Wang, Yingjian
    • Journal of the Optical Society of Korea
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    • 제15권1호
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    • pp.90-95
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    • 2011
  • 12-year LIDAR observations of tropospheric aerosol vertical distribution using a Mie scattering LIDAR in Hefei ($31.9^{\circ}N$, $117.2^{\circ}E$) from 1998 to 2009 are presented and analyzed in this paper. Characters of temporal variation and vertical distribution of tropospheric aerosol over Hefei are summarized from the LIDAR measurements. The impacts of natural source and human activities on the aerosol vertical distribution over Hefei could be seen clearly. Dust particles from the north in spring could affect the aerosol distributions below about 12 km over Hefei, and aerosol scale height in April reaches $2.29{\pm}0.68\;km$. Both LIDAR measurements and surface visibility imply that aerosols in the lower troposphere have been increasing since about 2005.