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CRISPR/Cas9-mediated knockout of the Vanin-1 gene in the Leghorn Male Hepatoma cell line and its effects on lipid metabolism

  • Lu Xu;Zhongliang Wang;Shihao Liu;Zhiheng Wei;Jianfeng Yu;Jun Li;Jie Li;Wen Yao;Zhiliang Gu
    • Animal Bioscience
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    • v.37 no.3
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    • pp.437-450
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    • 2024
  • Objective: Vanin-1 (VNN1) is a pantetheinase that catalyses the hydrolysis of pantetheine to produce pantothenic acid and cysteamine. Our previous studies have shown that the VNN1 is specifically expressed in chicken liver which negatively regulated by microRNA-122. However, the functions of the VNN1 in lipid metabolism in chicken liver haven't been elucidated. Methods: First, we detected the VNN1 mRNA expression in 4-week chickens which were fasted 24 hours. Next, knocked out VNN1 via CRISPR/Cas9 system in the chicken Leghorn Male Hepatoma cell line. Detected the lipid deposition via oil red staining and analysis the content of triglycerides (TG), low-density lipoprotein-C (LDL-C), and high-density lipoprotein-C (HDL-C) after VNN1 knockout in Leghorn Male Hepatoma cell line. Then we captured various differentially expressed genes (DEGs) between VNN1-modified LMH cells and original LMH cells by RNA-seq. Results: Firstly, fasting-induced expression of VNN1. Meanwhile, we successfully used the CRISPR/Cas9 system to achieve targeted mutations of the VNN1 in the chicken LMH cell line. Moreover, the expression level of VNN1 mRNA in LMH-KO-VNN1 cells decreased compared with that in the wild-type LMH cells (p<0.0001). Compared with control, lipid deposition was decreased after knockout VNN1 via oil red staining, meanwhile, the contents of TG and LDL-C were significantly reduced, and the content of HDL-C was increased in LMH-KO-VNN1 cells. Transcriptome sequencing showed that there were 1,335 DEGs between LMH-KO-VNN1 cells and original LMH cells. Of these DEGs, 431 were upregulated, and 904 were downregulated. Gene ontology analyses of all DEGs showed that the lipid metabolism-related pathways, such as fatty acid biosynthesis and long-chain fatty acid biosynthesis, were enriched. KEGG pathway analyses showed that "lipid metabolism pathway", "energy metabolism", and "carbohydrate metabolism" were enriched. A total of 76 DEGs were involved in these pathways, of which 29 genes were upregulated (such as cytochrome P450 family 7 subfamily A member 1, ELOVL fatty acid elongase 2, and apolipoprotein A4) and 47 genes were downregulated (such as phosphoenolpyruvate carboxykinase 1) by VNN1 knockout in the LMH cells. Conclusion: These results suggest that VNN1 plays an important role in coordinating lipid metabolism in the chicken liver.

Monovalent Ion Selective Anion-Exchange Membranes for Reverse Electrodialysis Application (역전기투석 응용을 위한 1가 이온 선택성 음이온교환막)

  • Ji-Hyeon Lee;Moon-Sung Kang
    • Membrane Journal
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    • v.34 no.1
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    • pp.58-69
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    • 2024
  • Reverse electrodialysis (RED) is an electro-membrane process employing ion-exchange membranes (IEMs) that can harvest electric energy from the concentration difference between seawater and river water. Multivalent ions contained in seawater and river water bind strongly to the fixed charge groups of the IEM, causing high resistance and reducing open-circuit voltage and power density through uphill transport. In this study, a pore-filled anion-exchange membrane (PFAEM) with excellent monovalent ion selectivity and electrochemical properties was fabricated and characterized for RED application. The monovalent ion selectivity of the prepared membrane was 3.65, which was superior to a commercial membrane (ASE, Astom Corp.) with a selectivity of 1.27 under the same conditions. Additionally, the prepared membrane showed excellent electrochemical properties, including low electrical resistance compared to ASE. As a result of evaluating RED performance under seawater of 0.459 M NaCl/0.0510 M Na2SO4 and river water of 0.0153 M NaCl/0.0017 M Na2SO4, the maximum power density of 1.80 W/m2 was obtained by applying the prepared membrane, which is a 40.6% improved output performance compared to the ASE membrane.

Experimental Study to Evaluate Thermal and Mechanical Behaviors of Frozen Soils according to Organic Contents (유기물 함유량에 따른 동토 시료의 열적·역학적 거동 평가를 위한 실험적 연구)

  • Sangyeong Park;Hyeontae Park;Hangseok Choi;YoungSeok Kim;Sewon Kim
    • Journal of the Korean Geosynthetics Society
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    • v.23 no.2
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    • pp.53-62
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    • 2024
  • Recently, development of non-traditional energy such as oil sands has been actively conducted in the cold region such as Canada. Frozen soil has different thermal and mechanical characteristics from general soil due to its high organic contents. This study evaluated the impact of organic matter content on the thermal and mechanical behavior of frozen soil samples collected from Alberta, Canada, and Gangwon Province, South Korea. As the organic content increases, the maximum dry unit weight decreases and the optimum moisture content increases in compaction tests. In uniaxial compression tests under frozen conditions, the strength of the frozen specimens increased as the temperature decreased. The strength of Canada soil sample increased with higher organic matter content at low temperatures. However, the strength of frozen soil was not significantly affected by organic matter content due to the complex behavior and unfrozen water content. Thermal conductivity tests showed higher thermal conductivity in frozen conditions compared to unfrozen conditions, due to the higher thermal conductivity of ice compared to water. These findings provide essential data for geotechnical design and construction in large-scale projects such as oil sands development in cold regions. Further research is needed to explore the impact of organic matter content on different types of frozen soils.

Importance of the Mixotrophic Ciliate Myrionecta rubra in Marine Ecosystems (해양 생태계 내에서 혼합영양 섬모류 Myrionecta rubra의 중요성)

  • Myung, Geum-Og;Kim, Hyung-Seop;Jang, Keon-Gang;Park, Jong-Woo;Yih, Won-Ho
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.12 no.3
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    • pp.178-185
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    • 2007
  • Myrionecta rubra Jankowski 1976(=Mesodinium rubrum Lohmann 1908), a mixotrophic ciliate, is very common and often causes recurrent red tides in diverse marine environments. Since the report on the first laboratory strain of this species in 2000, papers on its novel ecological role and evolutionary importance have been high lighted. This review paper is prepared to promote the de novo recognition M. rubra as a marine mixotrophic species. M. rubra is a ciliate which is able to photosynthesize using plastids originated from cryptophyte (including Teleaulax sp. and Geminigera sp.) prey cells (i.e. kleptoplastidic ciliate). Recently, novel bacterivory of M. rubra was firstly reported. Thus, the nutritional modes of M. rubra include photosynthesis, bacterivory, and algivory. In turn, M. rubra was reported as the prey species of metazoan predators such as calanoid copepods, mysids, larvae of ctenophore and anchovy, and spats of bivalves. In addition, it was reported that dinoflagellate Dinophysis causing diarrhetic shellfish poisoning is one among the predators of M. rubra. Thus, M. rubra, a marine mixotrophic ciliate, may play a pivotal role as a common linking ciliate for the flow of energy and organic material in pelagic food webs.

Experimental and analytical study of squat walls with alternative detailing

  • Leonardo M. Massone;Cristhofer N. Letelier;Cristobal F. Soto;Felipe A. Yanez;Fabian R. Rojas
    • Computers and Concrete
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    • v.33 no.5
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    • pp.497-507
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    • 2024
  • In squat reinforced concrete walls, the displacement capacity for lateral deformation is low and the ability to resist the axial load can quickly be lost, generating collapse. This work consists of testing two squat reinforced concrete walls. One of the specimens is built with conventional detailing of reinforced concrete walls, while the second specimen is built applying an alternative design, including stirrups along the diagonal of the wall to improve its ductility. This solution differs from the detailing of beams or coupling elements that suggest building elements equivalent to columns located diagonally in the element. The dimensions of both specimens correspond to a wall with a low aspect ratio (1:1), where the height and length of the specimen are 1.4 m, with a thickness of 120 mm. The alternative wall included stirrups placed diagonally covering approximately 25% of the diagonal strut of the wall with alternative detailing. The walls were tested under a constant axial load of 0.1f'cAg and a cyclic lateral displacement was applied in the upper part of the wall. The results indicate that the lateral strength is almost identical between both specimens. On the other hand, the lateral displacement capacity increased by 25% with the alternative detailing, but it was also able to maintain the 3 complete hysteretic cycles up to a drift of 2.5%, reaching longitudinal reinforcement fracture, while the base specimen only reached the first cycle of 2% with rapid degradation due to failure of the diagonal compression strut. The alternative design also allows 46% more energy dissipation than the conventional design. A model was used to capture the global response, correctly representing the observed behavior. A parametric study with the model, varying the reinforcement amount and aspect ratio, was performed, indicating that the effectiveness of the alternative detailing can double de drift capacity for the case with a low aspect ratio (1.1) and a large longitudinal steel amount (1% in the web, 5% in the boundary), which decreases with lower amounts of longitudinal reinforcement and with the increment of aspect ratio, indicating that the alternative detailing approach is reasonable for walls with an aspect ratio up to 2, especially if the amount of longitudinal reinforcement is high.

Study on the Seismic Random Noise Attenuation for the Seismic Attribute Analysis (탄성파 속성 분석을 위한 탄성파 자료 무작위 잡음 제거 연구)

  • Jongpil Won;Jungkyun Shin;Jiho Ha;Hyunggu Jun
    • Economic and Environmental Geology
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    • v.57 no.1
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    • pp.51-71
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    • 2024
  • Seismic exploration is one of the widely used geophysical exploration methods with various applications such as resource development, geotechnical investigation, and subsurface monitoring. It is essential for interpreting the geological characteristics of subsurface by providing accurate images of stratum structures. Typically, geological features are interpreted by visually analyzing seismic sections. However, recently, quantitative analysis of seismic data has been extensively researched to accurately extract and interpret target geological features. Seismic attribute analysis can provide quantitative information for geological interpretation based on seismic data. Therefore, it is widely used in various fields, including the analysis of oil and gas reservoirs, investigation of fault and fracture, and assessment of shallow gas distributions. However, seismic attribute analysis is sensitive to noise within the seismic data, thus additional noise attenuation is required to enhance the accuracy of the seismic attribute analysis. In this study, four kinds of seismic noise attenuation methods are applied and compared to mitigate random noise of poststack seismic data and enhance the attribute analysis results. FX deconvolution, DSMF, Noise2Noise, and DnCNN are applied to the Youngil Bay high-resolution seismic data to remove seismic random noise. Energy, sweetness, and similarity attributes are calculated from noise-removed seismic data. Subsequently, the characteristics of each noise attenuation method, noise removal results, and seismic attribute analysis results are qualitatively and quantitatively analyzed. Based on the advantages and disadvantages of each noise attenuation method and the characteristics of each seismic attribute analysis, we propose a suitable noise attenuation method to improve the result of seismic attribute analysis.

Implementation of Parallel Processor for Sound Synthesis of Guitar (기타의 음 합성을 위한 병렬 프로세서 구현)

  • Choi, Ji-Won;Kim, Yong-Min;Cho, Sang-Jin;Kim, Jong-Myon;Chong, Ui-Pil
    • The Journal of the Acoustical Society of Korea
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    • v.29 no.3
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    • pp.191-199
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    • 2010
  • Physical modeling is a synthesis method of high quality sound which is similar to real sound for musical instruments. However, since physical modeling requires a lot of parameters to synthesize sound of a musical instrument, it prevents real-time processing for the musical instrument which supports a large number of sounds simultaneously. To solve this problem, this paper proposes a single instruction multiple data (SIMD) parallel processor that supports real-time processing of sound synthesis of guitar, a representative plucked string musical instrument. To control six strings of guitar, we used a SIMD parallel processor which consists of six processing elements (PEs). Each PE supports modeling of the corresponding string. The proposed SIMD processor can generate synthesized sounds of six strings simultaneously when a parallel synthesis algorithm receives excitation signals and parameters of each string as an input. Experimental results using a sampling rate 44.1 kHz and 16 bits quantization indicate that synthesis sounds using the proposed parallel processor were very similar to original sound. In addition, the proposed parallel processor outperforms commercial TI's TMS320C6416 in terms of execution time (8.9x better) and energy efficiency (39.8x better).

A Study on Awareness of Nuclear Power Generation and Fukushima Contaminated Water (원자력발전과 후쿠시마 오염수에 대한 인식 연구)

  • Yeon-Hee Kang;Sung Hee Yang;Yong In Cho;Jung-Hoon Kim
    • Journal of the Korean Society of Radiology
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    • v.18 no.2
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    • pp.109-117
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    • 2024
  • In order to determine the level of awareness of nuclear power generation and Fukushima contaminated water, this study conducted an online survey targeting the general public living in the Busan area and analyzed a total of 201 questionnaires. Independent samples t-test and one-way analysis of variance were conducted to verify differences in variables according to the characteristics of the study subjects, and correlation analysis was conducted to confirm the correlation between variables. First, the results of the study showed that women had a more negative perception of nuclear power generation and Fukushima contaminated water than men. In terms of age, it was found that people in their 40s and older had a high level of negative perception. In terms of political inclination, progressive respondents showed a higher negative perception toward nuclear power generation and Fukushima contaminated water. Second, information on nuclear energy was most often collected through the Internet, broadcasting, and SNS. Third, the higher the negative perception of nuclear power generation, the more negative the results were in terms of issues of concern following the discharge of contaminated water at the Fukushima nuclear power plant. Nuclear power cannot be separated from human life. Therefore, it is believed that accurate information and a knowledge delivery system are needed to ensure correct awareness of nuclear power generation.

Analysis of The Human Thermal Environment in Jeju's Public Parking Lots in Summer and Suggestion for Its Modification (제주시 공영 주차장 내 여름철 인간 열환경 분석 및 저감 방안 제안)

  • Choi, Yuri;Park, Sookuk
    • Journal of the Korean Institute of Landscape Architecture
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    • v.52 no.3
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    • pp.18-32
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    • 2024
  • This study aims to analyze the summer human thermal environment in Jeju City's outdoor parking lots by measuring microclimate data and comparing pavement and vegetation albedoes and elements through computer simulations. In measured cases, results due to albedo showed no significance, but there was a significant difference between sunny and shaded areas by trees. The sunny area had a PET (physiological equivalent temperature) in the 'very hot' level, while the shaded area exhibited a 2-step lower 'warm' level. UTCI (universal thermal climate index) also showed that the sunny area was in the 'very strong heat stress' level, whereas the shaded area was 1-step lower in the 'strong heat stress' level, confirming the role of trees in reducing incoming solar radiant energy. Simulation results, using the measured albedoes, closely resembled the measured results. Regarding vegetation, scenarios with a wide canopy, high leaf density, and narrow planting spacing were effective in mitigating the human thermal environment, and the differences due to tree height varied across scenarios. The scenario with the lowest PET value was H9W9L3D8 (tree height 9m, canopy width 9m, leaf area index 3.0, planting spacing 8m), indicating a 0.7-step decrease compared to the current landscaping scenario. Thus, it was confirmed that, among landscaping elements, trees have a significant impact on the summer human thermal environment compared to ground pavement.

Physicochemical characteristics of carotenoid-enriched extract prepared from persimmon peels by ultrasound-assisted extraction with soybean oil solvent (초음파와 대두유 용매를 이용한 감 껍질 추출물의 이화학적 특성 )

  • Hun Sik Chung;Kwang Sup Youn;Soo Won Lee;Hey Kyung Moon;Jong Kuk Kim
    • Food Science and Preservation
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    • v.30 no.1
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    • pp.122-131
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    • 2023
  • Persimmon peels are mostly discared as a by-product of dried persimmon manufacturing, but effective use is required as it contains various functional constituents. This study covers the preparation of carotenoid-enriched oil by ultrasound treatment of persimmon peel in soybean oil solvent, and the investigation of its physicochemical characteristics. Using the Box-Behnken design and response surface methodology, the optimal extraction conditions (temperature, 62℃; time, 32 min; and persimmon peel to oil ratio, 1:3.1) were determined based on the carotenoid concentration of the extract. The physicochemical characteristics of the extract obtained under optimal conditions and the untreated soybean oil (control) were compared. The total carotenoid content of the extract increased. The carotenoid-enriched soybean oils had a lighter color than the controls, but with high redness and yellowness values. The effect of sonication and a component of the persimmon peel on the oxidation and heating stability of soybean oil was weak. The viscosity and activation energy of carotenoid-enriched soybean oil were slightly higher than those of the control. Thus, it was possible to prepare yellow-red carotenoid-enriched soybean oil by applying ultrasonic-soybean oil solvent extraction to persimmon peel. The oil is expected to be useful as an additive as well as a substitute for general edible oils.