• ALGAE
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• v.34 no.1
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• pp.57-70
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• 2019

DNA metabarcoding is currently used for large-scale taxonomic identification to understand the community composition in various marine ecosystems. However, before being widely used in this emerging field, this experimental and analytic approach still has several technical challenges to overcome, such as polymerase chain reaction (PCR) bias, and lack of well-established metabarcoding markers, a task which is difficult but not impossible to achieve. In this study, we present an adapted PCR-free small-organelles enriched metagenomics (SoEM) method for marine biodiversity assessment. To avoid PCR bias and random artefacts, we extracted target DNA sequences without PCR amplification from marine environmental samples enriched with small organelles including mitochondria and plastids because their genome sequences provide a valuable source of molecular markers for phylogenetic analysis. To experimentally enrich small organelles, we performed subcellular fractionation using modified differential centrifugation for marine environmental DNA samples. To validate our SoEM method, two marine environmental samples from the coastal waters were tested the taxonomic capturing capacity against that of traditional DNA metabarcoding method. Results showed that, regardless of taxonomic levels, at least 3-fold greater numbers of taxa were identified in our SoEM method, compared to those identified by the conventional multi-locus DNA metabarcoding method. The SoEM method is thus effective and accurate for identifying taxonomic diversity and presents a useful alternative approach for evaluating biodiversity in the marine environment.

• Journal of Korean Society on Water Environment
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• v.39 no.6
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• pp.451-464
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• 2023

Harmful cyanobacterial monitoring is time-consuming and requires skilled professionals. Recently, Phycocyanin, the accessory pigment unique to freshwater cyanobacteria, has been proposed as an indicator for the presence of cyanobacteria, with the advantage of rapid and simple measurement. The purpose of this research was to evaluate the correlation between the harmful cyanobacterial cell density and the concentration of phycocyanin and to consider how to use the real-time water quality monitoring system for algae bloom monitoring. In the downstream of the Nakdong River, Microcystis spp. showed maximum cell density (99 %) in harmful cyanobacteria (four target genera). A strong correlation between phycocyanin(measured in the laboratory) concentrations and harmful cyanobacterial cell density was observed (r = 0.90, p < 0.001), while a weaker relationship (r = 0.65, p < 0.001) resulted between chlorophyll a concentration and harmful cyanobacterial cell density. As a result of comparing the phycocyanin concentration (measured in submersible fluorescence sensor) and harmful cyanobacterial cell density, the error range increased as the number of cyanobacteria cells increased. Before opening the estuary bank, the diurnal variations of phycocyanin concentrations did not mix by depth, and in the case of the surface layer, a pattern of increase and decrease over time was shown. This study is the result of analysis when Microcystis spp. is dominant in downstream of Nakdong River in summer, therefore the correlation between the harmful cyanobacteria density and phycocyanin concentrations should be more generalized through spatio-temporal expansion.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.21 no.5
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• pp.17-28
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• 2018

Cyclonic-dissolved air flotation(Cyclonic-DAF), an advanced form of pressure flotation, applies a structure that enables the forming of twirling flows. This in turn allows for suspended matter to adhere to microbubbles and float to the surface of a treatment tank during the process of intake water flowing through a float separation tank. This study conducted a lab-scale test and pursued geometrical modeling using computational fluid dynamics(CFD) to establish a pilot scale design. Based on the design parameters found through the above process, a pilot cyclonic-DAF system($10m^3/hr$) for removing algae was created. Upon developing the pilot-scale cyclonic-DAF system, a type of algae coagulant(R-119) was applied as the coagulant to the system for field testing through which the removal rates of chlorophyll-a and cyanobacteria were evaluated. The chlorophyll-a and harmful cyanobacteria of the raw water at region B, the field-test site, were found to be $177.9mg/m^3$ and 652,500cells/mL respectively. Treated waters applied with 60mg/L and 100mg/L of algae coagulant presented removal efficiencies of approximately 95% and 97%, respectively. The cyanobacteria cell number of the treated waters applied with 60mg/L and 100mg/L of algae coagulant both that were equal to or less than 1,000cells/mL and were below attention level criteria for the issuance of algae boundary.

• ALGAE
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• v.36 no.4
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• pp.241-261
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• 2021

Amphidinium species are amongst the most abundant benthic dinoflagellates in marine intertidal sandy ecosystems. Some of them produce a variety of bioactive compounds that have both harmful effects and pharmaceutical potential. In this study, Amphidinium cells were isolated from intertidal sand collected from the East China Sea. The two strains established were subjected to detailed examination by light, and scanning and transmission electron microscopy. The vegetative cells had a minute, irregular, and triangular-shaped epicone deflected to the left, thus fitting the description of Amphidinium sensu stricto. These strains are distinguished from other Amphidinium species by combination characteristics: (1) longitudinal flagellum inserted in the lower third of the cell; (2) icicle-shaped scales, 276 ± 17 nm in length, on the cell body surface; (3) asymmetrical hypocone with the left side longer than the right; and (4) presence of immotile cells. Therefore, they are described here as Amphidinium stirisquamtum sp. nov. The molecular tree inferred from small subunit rRNA, large subunit rRNA, and internal transcribed spacer-5.8S sequences revealed that A. stirisquamtum is grouped together with the type species of Amphidinium, A. operculatum, in a fully supported clade, but is distantly related to other Amphidinium species bearing body scale. Live A.stirisquamtum cells greatly affected the survival of rotifers and brine shrimp, their primary grazers, making them more susceptible to predation by the higher tropic level consumers in the food web. This will increase the risk of introducing toxicity, and consequently, the bioaccumulation of toxins through marine food webs.

• Korean Journal of Ecology and Environment
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• v.42 no.1
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• pp.67-74
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• 2009

To study the influence of the rotifer Brachionus calyciflorus on harmful algal bloom suppression, we focused on assessing the rotifer's abilities using several prey species : Microcystis aeruginosa, Synechocystis sp., Chlorella vulgaris and Coelastrum sp. of the warm-weather species and the cold-weather centric diatom Stephanodiscus hantzchii. Grazing effects and growth rates of rotifers B. calyciflorus were 94.5% and $1.29d^{-1}$, respectively, for Synechocystis sp., 87.4% and $0.60d^{-1}$, respectively, for M. aeruginosa, 95.2% and $0.65d^{-1}$, respectively, for C. $vulgaris^{TM}$, 78.6% and $0.45d^{-1}$, respectively, for C. vulgaris UTEX., 86.5% and $0.99d^{-1}$, respectively, for Coelastrum sp., and 82.6% and $0.40d^{-1}$, respectively, for S. hantzchii. Of these, although the growth of Synechocystis and Coelastrum was effectively suppressed by rotifer grazing, efficient suppression effects on Stephanodiscus blooms were unexpected. The present study revealed that reproduction of B. calyciflorus was greatly influenced by its food types in the initial stages and the efficiencies of bio-agents as sole food sources vary depending on the target algae and the agent.

• ALGAE
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• v.28 no.4
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• pp.297-305
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• 2013

There is increasing interest in the relationships between marine bacteria and red tide organisms. Some bacteria are known to kill red tide organisms, and may be responsible for accelerating the termination of red tides. Thus, certain algicidal bacteria have been proposed for the control of red tides. Meanwhile, many red tide organisms are known to feed on marine bacteria. The roles of marine bacteria and red tide organisms are therefore reversible. In Korean waters, the killing of red tide organisms by algicidal bacteria, and also the feeding of red tide organisms on marine bacteria have been extensively investigated. The findings of such studies may influence the conventional view of red tide dynamics, and also planktonic food webs. Here, we review the species and concentrations of algicidal bacteria that kill red tide organisms in Korean waters, as well as the ingestion rate and grazing impact of red tide organisms on marine bacteria. Furthermore, we offer an insight into the ecological roles of these 2 components in marine planktonic food webs.

• ALGAE
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• v.39 no.1
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• pp.51-56
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• 2024

The use of droplet digital polymerase chain reaction (ddPCR) has greatly improved the quantification of harmful protists, outperforming traditional methods like quantitative PCR. Notably, ddPCR provides enhanced consistency and reproducibility at it resists PCR inhibitors commonly found in environmental DNA samples. This study aimed to determine the most effective filter material for ddPCR protocols by assessing the reproducibility of species-specific gene copy numbers and filtration time across six filter types: cellulose acetate (CA), mixed cellulose ester (MCE), nylon (NY), polycarbonate (PC), polyethersulfone (PES), and polyvinylidene fluoride (PVDF). The study used two species of Chattonella marina complexes as a case study. Filtration rates were slower for NY, PC, and PVDF filters. Moreover, MCE, NY, PES, and PVDF yielded lower DNA amounts than other filters. Importantly, the CA filter exhibited the lowest variance (38-39%) and the highest determination coefficients (R² = 0.92-0.96), indicating superior performance. These findings suggest that the CA filter is the most suitable for ddPCR quantification of marine protists, offering quick filtration and reliable reproducibility.

• Journal of the Korea Institute of Information and Communication Engineering
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• v.16 no.2
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• pp.331-336
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• 2012

Red tide is a temporary natural phenomenon involving harmful algal blooms (HABs) in company with a changing sea color from normal to red or reddish brown, and which has a bad influence on coast environments and sea ecosystems. The HABs have inflicted massive mortality on fin fish and shellfish, damaging the economies of fisheries for almost every year from 1990 in South Korea. There have been many studies on red tide due to increasing damage from red tide on fishing and aquaculture industry. However, internal study of automatic red tide image classification is not enough. Especially, extraction of matching center features for recognizing algae image object is difficult because over 200 species of algae in the world have a different size and features. Previously studies used a few type of red tide algae for image classification. In this paper, we proposed the red tide image recognition method using NMF and revison of rotation angle for enhancing of recognition of red tide algae image.

• The KIPS Transactions:PartB
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• v.18B no.5
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• pp.291-294
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• 2011

Red tide is a temporary natural phenomenon to change sea color by harmful algal blooms, which finfish and shellfish die en masse. There have been many studies on red tide due to increasing of harmful algae damage of fisheries in Korea. Particularly, red tide damage can be minimized by means of prediction of red tide blooms. However, the most of red tide research in Korea has been focused only classification of red tide which it is not enough for predicting red tide blooms. In this paper, we proposed the red tide blooms prediction method using fuzzy reasoning.

• Environmental Engineering Research
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• v.24 no.3
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• pp.397-403
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• 2019

Microcystis sp. is one of the most common harmful cyanobacteria that release toxic substances. Counting algal cells is often used for effective control of harmful algal blooms. However, Microcystis sp. is commonly observed as a colony, so counting individual cells is challenging, as it requires significant time and labor. It is urgent to develop an accurate, simple, and rapid method for counting algal cells for regulatory purposes, estimating the status of blooms, and practicing proper management of water resources. The flow cytometer and microscope (FlowCAM), which is a dynamic imaging particle analyzer, can provide a promising alternative for rapid and simple cell counting. However, there is no accurate method for counting individual cells within a Microcystis colony. Furthermore, cell counting based on two-dimensional images may yield inaccurate results and underestimate the number of algal cells in a colony. In this study, a three-dimensional cell counting approach using a novel model algorithm was developed for counting individual cells in a Microcystis colony using a FlowCAM. The developed model algorithm showed satisfactory performance for Microcystis sp. cell counting in water samples collected from two rivers, and can be used for algal management in fresh water systems.