• Title/Summary/Keyword: Cell image

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Breast Tumor Cell Nuclei Segmentation in Histopathology Images using EfficientUnet++ and Multi-organ Transfer Learning

  • Dinh, Tuan Le;Kwon, Seong-Geun;Lee, Suk-Hwan;Kwon, Ki-Ryong
    • Journal of Korea Multimedia Society
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    • v.24 no.8
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    • pp.1000-1011
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    • 2021
  • In recent years, using Deep Learning methods to apply for medical and biomedical image analysis has seen many advancements. In clinical, using Deep Learning-based approaches for cancer image analysis is one of the key applications for cancer detection and treatment. However, the scarcity and shortage of labeling images make the task of cancer detection and analysis difficult to reach high accuracy. In 2015, the Unet model was introduced and gained much attention from researchers in the field. The success of Unet model is the ability to produce high accuracy with very few input images. Since the development of Unet, there are many variants and modifications of Unet related architecture. This paper proposes a new approach of using Unet++ with pretrained EfficientNet as backbone architecture for breast tumor cell nuclei segmentation and uses the multi-organ transfer learning approach to segment nuclei of breast tumor cells. We attempt to experiment and evaluate the performance of the network on the MonuSeg training dataset and Triple Negative Breast Cancer (TNBC) testing dataset, both are Hematoxylin and Eosin (H & E)-stained images. The results have shown that EfficientUnet++ architecture and the multi-organ transfer learning approach had outperformed other techniques and produced notable accuracy for breast tumor cell nuclei segmentation.

Line Tracking Algorithm for Table Structure Analysis in Form Document Image (양식 문서 영상에서 도표 구조 분석을 위한 라인 추적 알고리즘)

  • Kim, Kye-Kyung
    • Journal of Software Assessment and Valuation
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    • v.17 no.2
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    • pp.151-159
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    • 2021
  • To derive grid lines for analyzing a table layout, line image enhancement techniques are studying such as various filtering or morphology methods. In spite of line image enhancement, it is still hard to extract line components and to express table cell's layout logically in which the cutting points are exist on the line or the tables are skewing . In this paper, we proposed a line tracking algorithm to extract line components under the cutting points on the line or the skewing lines. The table document layout analysis algorithm is prepared by searching grid-lines, line crossing points and gird-cell using line tracking algorithm. Simulation results show that the proposed method derive 96.4% table document analysis result with average 0.41sec processing times.

Shape From Focus Algorithm with Optimization of Focus Measure for Cell Image (초점 연산자의 최적화를 통한 세포영상의 삼차원 형상 복원 알고리즘)

  • Lee, Ik-Hyun;Choi, Tae-Sun
    • The Journal of Korea Institute of Information, Electronics, and Communication Technology
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    • v.3 no.3
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    • pp.8-13
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    • 2010
  • Shape form focus (SFF) is a technique that reconstructs 3D shape of an object using image focus. Although many SFF methods have been proposed, there are still notable inaccuracy effects due to noise and non-optimization of image characteristics. In this paper, we propose a noise filter technique for noise reduction and genetic algorithm (GA) for focus measure optimization. The proposed method is analyzed with a statistical criteria such as Root Mean Square Error (RMSE) and correlation.

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An Image Cytometric MTT Assay as an Alternative Assessment Method of Nanoparticle Cytotoxicity

  • Lee, Song Hee;Park, Jonghoon;Kwon, Dongwook;Yoon, Tae Hyun
    • Bulletin of the Korean Chemical Society
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    • v.35 no.7
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    • pp.1933-1938
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    • 2014
  • Despite increasing importance of in vitro cell-based assays for the assessment of nanoparticles (NPs) cytotoxicity, their suitability for the assessment of NPs toxicity is still in doubt. Here, limitations of widely used cell viability assay protocol (i.e., MTT asssay) for the cytotoxicity assessment of P25 $TiO_2$ NPs were carefully examined and an alternative toxicity assessment method to overcome these limitations was proposed, where the artifacts caused by extracellularly formed formazan and light scattered by agglomerated NPs were minimized by measuring only the intracellular formazan via image cytometric methods.

Densitometric features of cell nuclei for grading bladder carcinoma (세포핵 조밀도에 의한 방광암의 진행 단계)

  • Choi, Heung-Kook;Bengtsson, Ewert
    • Proceedings of the KOSOMBE Conference
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    • v.1996 no.11
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    • pp.357-362
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    • 1996
  • A way of quantitatively describing the tissue architecture we have investigated when developing a computer program for malignancy grading of transitional cell bladder carcinoma. The minimum spanning trees, MST was created by connecting the center points of the nuclei in the tissue section image. These nuclei were found by thresholding the image at an automatically determined threshold followed by a connected component labeling and a watershed algorithm for separation of overlapping nuclei. Clusters were defined in the MST by thresholding the edge lengths. For these clusters geometric and densitometric features were measures. These features were compared by multivariate statistical methods to the subjective grading by the pathologists and the resulting correspondence was 85% on a material of 40 samples.

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A Study on Automatic Classification System of Red Blood Cell for Pathological Diagnosis in Blood Digitial Image (혈액영상에서 병리진단을 위한 적혈구 세포의 자동분류에 관한 연구)

  • 김경수;김동현
    • Journal of the Korea Society of Computer and Information
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    • v.4 no.1
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    • pp.47-53
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    • 1999
  • In medical field, the computer has been used in the automatic processing of data derived in hospital. the automation of diagonal devices, and processing of medical digital images. In this paper, we classify red blood cell into 16 class including normal cell to the automation of blood analysis to diagnose disease. First, using UNL Fourier and invariant moment algorithm, we extract features of red blood cell from blood cell image and then construct multi-layer backpropagation neural network to recognize. We proof that the system can give support to blood analyzer through blood sample analysis of 10 patients.

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Cell-Based Wavelet Compression Method for Volume Data (볼륨 데이터를 위한 셀 기반 웨이브릿 압축 기법)

  • Kim, Tae-Yeong;Sin, Yeong-Gil
    • Journal of KIISE:Computer Systems and Theory
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    • v.26 no.11
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    • pp.1285-1295
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    • 1999
  • 본 논문은 방대한 크기의 볼륨 데이타를 효율적으로 렌더링하기 위한 셀 기반 웨이브릿 압축 방법을 제시한다. 이 방법은 볼륨을 작은 크기의 셀로 나누고, 셀 단위로 웨이브릿 변환을 한 다음 복원 순서에 따른 런-길이(run-length) 인코딩을 수행하여 높은 압축율과 빠른 복원을 제공한다. 또한 최근 복원 정보를 캐쉬 자료 구조에 효율적으로 저장하여 복원 시간을 단축시키고, 에러 임계치의 정규화로 비정규화된 웨이브릿 압축보다 빠른 속도로 정규화된 압축과 같은 고화질의 이미지를 생성하였다. 본 연구의 성능을 평가하기 위하여 {{}} 해상도의 볼륨 데이타를 압축하여 쉬어-? 분해(shear-warp factorization) 알고리즘에 적용한 결과, 손상이 거의 없는 상태로 약 27:1의 압축율이 얻어졌고, 약 3초의 렌더링 시간이 걸렸다.Abstract This paper presents an efficient cell-based wavelet compression method of large volume data. Volume data is divided into individual cell of {{}} voxels, and then wavelet transform is applied to each cell. The transformed cell is run-length encoded according to the reconstruction order resulting in a fairly good compression ratio and fast reconstruction. A cache structure is used to speed up the process of reconstruction and a threshold normalization scheme is presented to produce a higher quality rendered image. We have combined our compression method with shear-warp factorization, which is an accelerated volume rendering algorithm. Experimental results show the space requirement to be about 27:1 and the rendering time to be about 3 seconds for {{}} data sets while preserving the quality of an image as like as using original data.

Dual Dictionary Learning for Cell Segmentation in Bright-field Microscopy Images (명시야 현미경 영상에서의 세포 분할을 위한 이중 사전 학습 기법)

  • Lee, Gyuhyun;Quan, Tran Minh;Jeong, Won-Ki
    • Journal of the Korea Computer Graphics Society
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    • v.22 no.3
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    • pp.21-29
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    • 2016
  • Cell segmentation is an important but time-consuming and laborious task in biological image analysis. An automated, robust, and fast method is required to overcome such burdensome processes. These needs are, however, challenging due to various cell shapes, intensity, and incomplete boundaries. A precise cell segmentation will allow to making a pathological diagnosis of tissue samples. A vast body of literature exists on cell segmentation in microscopy images [1]. The majority of existing work is based on input images and predefined feature models only - for example, using a deformable model to extract edge boundaries in the image. Only a handful of recent methods employ data-driven approaches, such as supervised learning. In this paper, we propose a novel data-driven cell segmentation algorithm for bright-field microscopy images. The proposed method minimizes an energy formula defined by two dictionaries - one is for input images and the other is for their manual segmentation results - and a common sparse code, which aims to find the pixel-level classification by deploying the learned dictionaries on new images. In contrast to deformable models, we do not need to know a prior knowledge of objects. We also employed convolutional sparse coding and Alternating Direction of Multiplier Method (ADMM) for fast dictionary learning and energy minimization. Unlike an existing method [1], our method trains both dictionaries concurrently, and is implemented using the GPU device for faster performance.

Computer Simulation for Ink Transfer from Cell onto Paper in the Gravure (그라비어 印刷에서 잉크 轉移에 관한 시뮬레이션)

  • Youn, Jong-Tae;Kim, Kwang-Heui;Kim, Byung-Tak
    • Journal of the Korean Graphic Arts Communication Society
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    • v.21 no.2
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    • pp.21-29
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    • 2003
  • In gravure printing, all of the ink in the gravure cells does not leave the cell onto the substrate. The ink transfer from plate to paper in the gravure printing was simulated by computer. A few studies have dealt with cell withdrawal with simplified Newtonian flow models however, this work was performed with the non-Newtonian inks with different simulation software.

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A study on the Screening of the Abnormal Cells for Automated Cytodiagnosis (세포진 자동화를 위한 이상세포의 스크리닝에 관한 연구)

  • 한영환;장영건
    • Journal of Biomedical Engineering Research
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    • v.12 no.2
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    • pp.89-98
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    • 1991
  • This study is concerned on the automation for cell diagnosis which has better objectivity and speed of test than human beings. Diagnosis is on the basis of shape change of abnormal Cells. Used parameters are nucleus area, nucleus perimeter, nucleus shape, cytoplasm area, nucleus/cytoplsm ratio, which was obtained using image processing technics. A new mode method is proposed on the automatic threshold selection for superior process time compared with Otsu's. Contour of the cytoplasm of abnormal cell is obtained using me- dian filter and sorel operator. The mask to get only original shape of abnormal cells is formed uslng the contour filling algorithm. In the result the normal cells are separated from the abnormal cells and the abnormal cells can be distinguished through screwing of abnormal cell's image with reference data to judge abnormal cells. Owing to this study the number of inspections which the pathologists should examine will be decreased and the time for inspection will be shortened.

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