• 한국진공학회:학술대회논문집
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• 한국진공학회 2016년도 제50회 동계 정기학술대회 초록집
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• pp.102-102
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• 2016

Water, which is most abundant in Earth surface and very closely related to all forms of living organisms, has a simple molecular structure but exhibits very unique physical and chemical properties. Even though tremendous effort has been paid to understand this nature's core substance, there amazingly still lefts much room for scientist to explore its novel behaviors. Especially, as the scale goes down to nano-regime, water shows extraordinary properties that are not observable in bulk state. One of such interesting features is the formation of nanoscale bubbles showing unusual long-term stability. Nanobubbles can be spontaneously formed in water on hydrophobic surface or by decompression of gas-saturated liquid. In addition, the nanobubbles can be generated during electrochemical reaction at normal hydrogen electrode (NHE), which possibly distorts the standard reduction potential at NHE as the surface nanobubble screens the reaction with electrolyte solution. However, the real-time evolution of these nanobubbles has been hardly studied owing to the lack of proper imaging tools in liquid phase at nanoscale. Here we demonstrate, for the first time, that the behaviors of nanobubbles can be visualized by in situ transmission electron microscope (TEM), utilizing graphene as liquid cell membrane. The results indicate that there is a critical radius that determines the long-term stability of nanobubbles. In addition, we find two different pathways of nanobubble growth: i) Ostwald ripening of large and small nanobubbles and ii) coalescence of similar-sized nanobubbles. We also observe that the nucleation and growth of nanoparticles and the self-assembly of biomolecules are catalyzed at the nanobubble interface. Our finding is expected to provide a deeper insight to understand unusual chemical, biological and environmental phenomena where nanoscale gas-state is involved.

• Journal of Microbiology and Biotechnology
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• 제27권4호
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• pp.838-843
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• 2017

Sepsis is a major health problem worldwide, with an extremely high rate of morbidity and mortality, partly due to delayed diagnosis during early disease. Currently, sepsis diagnosis requires bacterial culturing of blood samples over several days, whereas PCR-based molecular diagnosis methods are faster but lack sensitivity. The use of biosensors containing nucleic acid aptamers that bind targets with high affinity and specificity could accelerate sepsis diagnosis. Previously, we used the systematic evolution of ligands by exponential enrichment technique to develop the aptamers Antibac1 and Antibac2, targeting the ubiquitous bacterial peptidoglycan. Here, we show that these aptamers bind to four gram-positive and seven gram-negative bacterial sepsis agents with high binding efficiency. Thus, these aptamers could be used in combination as biological recognition elements in the development of biosensors that are an alternative to rapid bacteria detection, since they could provide culture and amplification-free tests for rapid clinical sepsis diagnosis.

• 한국정보통신학회논문지
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• 제20권9호
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• pp.1816-1821
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• 2016

단백질은 대부분의 생물학적 과정에서 중대한 역할을 수행하고 있으므로, 단백질 진화, 구조와 기능을 알아내기 위하여 많은 연구가 수행되고 있는데, 단백질의 이차 구조는 이러한 연구의 중요한 기본적 정보이다. 본 연구는 대규모 단백질 구조 자료로부터 단백질 이차 구조 정보를 효과적으로 추출하여 미지의 단백질 서열이 가지는 이차 구조를 예측하려 한다. 질의 서열과 상동관계에 있는 단백질 구조자료내의 서열들을 광범위하게 찾아내기 위하여, 탐색에 사용하는 프로파일의 구성에 질의 서열과 유사한 서열들을 사용하고 갭을 허용하여 반복적인 탐색이 가능한 PSI-BLAST를 사용하였다. 상동 단백질들의 이차구조는 질의 서열과의 상동 관계의 강도에 따라 가중되어 이차 구조 예측에 기여되었다. 이차 구조를 각각 세 개와 여덟 개로 분류하는 예측 실험에서 상동 서열들과 신경망을 동시에 사용하여 93.28%와 88.79%의 정확도를 얻어서 기존 방법보다 성능이 향상되었다.

• KSBB Journal
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• 제23권3호
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• pp.213-218
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• 2008

일반적으로 약주 생산 공정에서 고정화 담체를 이용하는 연속식 반응기에서는 회분식 반응기와 비교하여 생성되는 알코을 생성량 못지않게 연속식 반응기에서 연속적으로 생성되고 있음을 알 수 있었다. 고정화 담체를 이용한 연속식 반응기는 약주의 품질에 긍정적인 효과를 보이는 것으로 나타났으며 담금 공정에서의 처리효과를 분석한 결과는 다음과 같다. 1) 회분식 배양에서 에탄올의 생성량은 1차 담금 1일 째부터 12%이상 증가하는 것으로 나타났으며 연속배양은 2차 담금에 효모를 주입하지 않아도 회분식 배양에서와 같은 알코올 도수를 가지면서 지속적으로 얻어졌다. 또한 pH는 4.4에서 3.8로 감소하는 패턴을 나타냈으며 산소농도는 1 ppm정도 차이가 나타났으나 이는 연속적으로 기질이 반응기로 주입되기 때문에 증가된 것이다. 2) 폴리플로필렌에 폴리스티렌을 샌드위치식으로 접합한 고정화 미생물담체는 연속배양에서 효모 주입 없이도 회분식 배양과 비교해보았을 경우에 당화과정과 알코올 생성과정 등이 서로 상반되는 패턴을 갖으면서 생물학적인 반응이 정상적으로 진행됨을 증명하였다. 3) 연속배양의 실험결론을 토대로 1차 담금에서 당의 생성기질을 이용하였을 경우, 10톤/일 생산하는 약주생산 공장은 1년간 효모 투입비용을 환산해 본 결과 1억원 이상의 투입비용이 감소하는 것으로 나타났다.

• 한국발생생물학회지:발생과생식
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• 제17권3호
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• pp.231-240
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• 2013

Olive flounder (Paralichthys olivaceus) is one of the commercial important flatfish species in Korea. The ocular signal transduction pathway is important in newly hatched flounders because it is closely involved in the initial feeding phase thus essential for survival during the juvenile period. However, the study of gene expression during ocular development is incomplete in olive flounder. Therefore we examined the expression analysis of specifically induced genes during the development of the visual system in newly hatched flounders. We searched ocular development-involved gene in the database of expressed sequence tags (ESTs) from olive flounder eye and this gene similar to arrestin with a partial sequence homology. Microscopic observation of retinal formation corresponded with the time of expression of the arrestin gene in the developmental stage. These results suggest that arrestin plays a vital role in the visual signal transduction pathway of the retina during ocular development. The expression of arrestin was strong in the ocular system during the entirety of the development stages. Our findings regarding arrestin have important implications with respect to its biological role and evolution of G-protein coupled receptor (GPCR) signaling in olive flounder. Further studies are required on the GPCR-mediated signaling pathway and to decipher the functional role of arrestin.

• 한국물환경학회지
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• 제29권2호
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• pp.232-238
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• 2013

Water temperature is key factor influencing growth and reproduction of fish and its increase give rise to various physiological changes including gene expression. Heat shock protein (Hsp), one of the molecular chaperones, is highly conserved throughout evolution and its expression is induced by various stressors such as temperature, oxidative, physical and chemical stresses. Here, we isolated partial cDNA clones encoding 70-kDa Hsp (Hsp70) and $\beta$-actin using reverse transcriptase-PCR (RT-PCR) from gut of Rhynchocypris kumgangensis, a Korean indigenous species and cold-water fish, and investigated expression profiles of Hsp70 under an increase of water temperature using $\beta$-actin as an internal control for RT-PCR. Cloned Hsp70 cDNA of R. kumgangensis showed homology to Ctenopharyngodon idella (96%), Hypophthalmichthys molitrix (96%), Danio rerio (93%) and Oncorhynchus mykiss (81%) Hsp70. Cloned $\beta$-actin cDNA of R. kumgangensis showed homology to D. rerio (98%), H. molitrix (97%), C. idella (97%) and O. mykiss (90%) $\beta$-actin. Both mRNA of Hsp70 and $\beta$-actin were expressed in gut, brain, and liver in R. kumgangensis. Futhermore, expression of Hsp70, in brain, was highly augmented by an increase of water temperature. These results suggest that Hsp70 mRNA expression level in brain can be used as a biological molecular marker to represent physiological stress against an increase of water temperature.

• 한국실내디자인학회논문집
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• 제19권6호
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• pp.100-111
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• 2010

'Pattern' is the term that is frequently used in the aspects of history, society, and science. It always appears in the remains or relics of the age of civilization when recording was started, and its evaluation and value differ by time. Patterns in the ancient civilization were symbolic, social, and spatially crucial. However, after the modernization, they were considered to be immoral and unnecessary, so the range of their significance came to reduce. Due to the development of science, ornament patterns lost the limitation of its range of use along with new interpretation of them. Especially with the advent of new scientific theories such as the evolution theory from the biological aspect, quantum mechanics, and super string theory, morphological possibilities more than the human scale perceived by men came to be discovered. Living organisms maintain their lives through patterns, structures, and processes in order to produce a system alive. Among them, patterns are the organization of relations determining the characteristics of the system. The present patterns may correspond to this meaning. The pattern in a space is the matter of how to relate the components after all. In a space, however, there are numerous components mingled with one another. If these tasks are conducted as analogue work, it will take a lot of time and effort. However, if digital media are utilized to perform the tasks like analysis, generation, or fabrication, it will produce a result with higher precision and efficiency. In this sense, parametric modeling is quite useful media. Opening morphological variation, it realizes more possibilities, connects conveniently the relations between complex components composing a space, and helps produce creative patterns.

• Animal Systematics, Evolution and Diversity
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• 제28권3호
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• pp.192-207
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• 2012

To supply the morphological and ecological information of oligotrich ciliates in Korea, water samples were seasonally collected in Gwangyang Bay and Jinhae Bay from August, 2010 to February, 2012 and processed by quantitative protargol staining method. As a result, six species belonging to the genus Strombidium Clapar$\grave{e}$de and Lachmann, 1859 are identified: Strombidium emergens Kahl, 1932; S. dalum Lynn et al., 1988; S. epidemum Lynn et al., 1988; S. tressum Lynn et al., 1988; S. bilobum Lynn and Gilron, 1993; S. pollostomum Lynn and Gilron, 1993. These six species were newly reported from Korean coastal waters. Strombidium emergens is a middle sized Strombidium ($20-50{\mu}m$ in length) and has open and deep oral groove to girdle portion. Strombidium dalum is a small sized Strombidium (${\geq}20{\mu}m$ in length), that has torch-like spiral anterior membranelles and an inverted triangles-shaped macronucleus on the posterior pole. The small sized S. epidemum has conspicuous trichites surrounding the girdle portion and ventral membranelles distinctly separated from anterior membranelles. The small sized S. tressum has torch-like spiral and extremely long trichites among the cilia of anterior membranelles. The middle sized S. bilobum has a bilobed macronucleus. Strombidium pollostomum is also a small sized Strombidium but its ventral membranelles are continuously connected with anterior membranelles. The five species except S. emergens occurred frequently over the wide range of water temperatures and salinities.

• 전자공학회논문지
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• 제51권5호
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• pp.51-57
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• 2014

본 논문에서는 M-ary 홀로그래픽 데이터 저장장치에 적용 가능한 진화 연산 알고리즘 기반 적응적 문턱치 검출 기법을 제안한다. 전통적으로 유전 알고리즘은 생명체의 유전자 진화과정에 근간하여 최적 혹은 준최적 문제와 데이터 추정을 위해 사용되는 매우 유용한 기법이다. 본 연구에서는 픽셀 어긋남이 심화되는 2차원 홀로그래픽 채널 환경에서 데이터의 검출 성능을 향상시키기 위해서, 각 데이터 검출 영역의 문턱 값(threshold value)을 유전 알고리즘의 인구 집합(population set)의 해로 간주하여 비트 검출 영역을 적응적으로 선택하는 방법을 제안한다. 제안하는 기법의 성능을 평가하기 위해 픽셀 어긋남 현상이 심화된 4-ary 멀티레벨 입력의 홀로그래픽 채널 환경을 고려하고 모의실험을 수행하여 진화 연산의 세대수에 따른 비트오율 성능을 측정한다. 성능평가를 통해 기존의 비트 검출 기법과 비교함으로써 제안 기법의 우수성을 확인하였다.

• Journal of Electrochemical Science and Technology
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• 제8권3호
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• pp.183-196
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• 2017

The research efforts directed at advancing water electrolysis technology continue to intensify together with the increasing interest in hydrogen as an alternative source of energy to fossil fuels. Among the various water electrolysis systems reported to date, systems employing a solid polymer electrolyte membrane are known to display both improved safety and efficiency as a result of enhanced separation of products: hydrogen and oxygen. Conducting water electrolysis in an alkaline medium lowers the system cost by allowing non-platinum group metals to be used as catalysts for the complex multi-electron transfer reactions involved in water electrolysis, namely the hydrogen and oxygen evolution reactions (HER and OER, respectively). We briefly review the anion exchange membranes (AEMs) and electrocatalysts developed and applied thus far in alkaline AEM water electrolysis (AEMWE) devices. Testing the developed components in AEMWE cells is a key step in maximizing the device performance since cell performance depends strongly on the structure of the electrodes containing the HER and OER catalysts and the polymer membrane under specific cell operating conditions. In this review, we discuss the properties of reported AEMs that have been used to fabricate membrane-electrode assemblies for AEMWE cells, including membranes based on polysulfone, poly(2,6-dimethyl-p-phylene) oxide, polybenzimidazole, and inorganic composite materials. The activities and stabilities of tertiary metal oxides, metal carbon composites, and ultra-low Pt-loading electrodes toward OER and HER in AEMWE cells are also described.