• Title/Summary/Keyword: tef1

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Identification of Trichoderma, a Competitor of Shiitake Mushroom (Lentinula edodes), and Competition between Lentinula edodes and Trichoderma species in Korea

  • Kim, Chang-Sun;Park, Myung-Soo;Kim, Seon-Cheol;Maekawa, Nitaro;Yu, Seung-Hun
    • The Plant Pathology Journal
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    • v.28 no.2
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    • pp.137-148
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    • 2012
  • During investigating of shiitake mushroom competitors, 289 isolates of Trichoderma spp. were collected from shiitake mushroom farms in different districts and the Forest Mushroom Research Center of Korea, among which 29 representative strains were selected. Based on the DNA sequences of the rpb2 and tef1 genes and the ITS rDNA, and their morphological characteristics, they were identified as T. atroviride, T. citrinoviride, T. harzianum, T. longibrachiatum, and two undescribed species, Trichoderma spp. 1 and 2, which are considered to be the candidate of new species. Competition tests between Lentinula edodes (Sanjo302) and the Trichoderma species indicated that the six species of Trichoderma were significantly different from each other in terms of their ability to invade the mycelial blocks of shiitake. In both of dual cultures on potato dextrose agar and sawdust media, Trichoderma spp. 1 and 2 strongly invaded the mycelial blocks of shiitake. Our results suggest that the two Trichoderma species may cause potentially serious economic losses in shiitake cultivation of Korea.

Indoor Exposure and Health Risk of Polycyclic Aromatic Hydrocarbons (PAHs) in Public Facilities, Korea

  • Kim, Ho-Hyun;Lim, Young-Wook;Jeon, Jun-Min;Kim, Tae-Hun;Lee, Geon-Woo;Lee, Woo-Seok;Lim, Jung-Yun;Shin, Dong-Chun;Yang, Ji-Yeon
    • Asian Journal of Atmospheric Environment
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    • v.7 no.2
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    • pp.72-84
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    • 2013
  • In the study, pollution levels of indoor polycyclic aromatic hydrocarbons (PAHs) in public facilities (vapor phase or particulate phase) were evaluated, and a health risk assessment (HRA) was carried out based on exposure scenarios. Public facilities in Korea covered by the law, including underground subway stations, funeral halls, child care facilities, internet cafes (PC-rooms), and exhibition facilities (6 locations for each type of facility, for a total of 48 locations), were investigated for indoor assessment. For the HRA, individual excess cancer risk (ECR) was estimated by applying main toxic equivalency factor (TEF) values suggested in previous studies. Among the eight public facilities, internet cafes showed the highest average $PM_{2.5}$ concentration at $110.0{\mu}g/m^3$ (range: $83.5-138.5{\mu}g/m^3$). When assuming a risk of facility exposure time based upon the results of the surveys for each public facility, the excess cancer risk using the benzo(a)pyrene indicator assessment method was estimated to be $10^{-7}-10^{-6}$ levels for each facility. Based on the risk associated with various TEF values, the excess cancer risk based upon the seven types cancer EPA (1993) and Malcolm & Dobson's (1994) assessment method was estimated to be $10^{-7}-10^{-5}$ for each facility. The excess cancer risk estimated from the TEF EPA (2010) assessment was the highest: $10^{-7}-10^{-4}$ for each facility. This is due to the 10-fold difference between the TEF of dibenzo(a,e)fluoranthene in 2010 and in 1994. The internet cafes where smoking was the clear pollutant showed the highest risk level of $10^{-4}$, which exceeded the World Health Organization's recommended risk of $1{\times}10^{-6}$. All facilities, with the exception of internet cafes, showed a $10^{-6}$ risk level. However, when the TEFs values of the US EPA (2010) were applied, the risk of most facilities in this study exceeded $1{\times}10^{-6}$.

A case of acute respiratory distress syndrome associated with congenital H-type tracheoesophageal fistula and gastroesophageal reflux (급성호흡곤란증후군을 초래한 위식도역류와 H-형태의 선천기관식도루 1예)

  • Chueh, Heewon;Kim, Myo Jing;Jung, Jin-A
    • Clinical and Experimental Pediatrics
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    • v.51 no.8
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    • pp.892-895
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    • 2008
  • H-type tracheoesophageal fistula (TEF) is extremely rare in infants and children, and clinical manifestations of this condition are diverse based on its severity. Some cases of congenital TEF diagnosed in adulthood have been reported, which indicate the difficulty of early diagnosis of this disease. Gastroesophageal reflux (GER) may induce chronic aspiration, pulmonary aspiration, apparent life-threatening events, and failure to thrive. We report a 5-month-old boy whose recurrent pneumonia and wheezing did not improve under usual treatment and led to acute respiratory distress syndrome. He was found to have severe GER on the second-trial of the esophagogram and was eventually revealed to have congenital H-type TEF upon repeated evaluation.

A Study on the Flexor-Extensor Muscle Strength of the Trunk with Isokinetic Equipment according to Sasang Constitution (등속성 운동기를 이용한 사상체질별 요부 굴곡 및 신전근의 근력 평가에 관한 연구)

  • Lee, Han-Gil;Jeon, Tae-Dong;Hong, Seo-Young;Heo, Dong-Seok;Yoon, Il-Ji
    • Journal of Korean Medicine Rehabilitation
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    • v.18 no.3
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    • pp.91-98
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    • 2008
  • Objectives : The purpose of this study is to evaluate flexor-extensor muscle strength of trunk according to Sasang constitution. Methods : This study was carried out with the data from comprehensive medical testing. People were performed Trunk Extension Flexion(TEF) Program of CYBEX NORM System and QSCC(Questionnaire of Sasang Constitution Classification) II test. And then we made three groups according to Sasang constitution and analyzed isokinetic strength on the TEF. Results : 1. A significant difference(Taeumin>Soeumin>Soyangin) was found in flexor muscle peak torque(PT) of trunk according to Sasang constitution(P<0.05). 2. A significant difference was not found in flexor muscle peak torque%body weight (PT%BW) of trunk according to Sasang constitution. 3. A significant difference(Taeumin>Soeumin>Soyangin) was found in extensor muscle peak torque(PT) of trunk according to Sasang constitution(P<0.05). 4. A significant difference(Soeumin>Taeumin>Soyangin) was found in extensor muscle peak torque%body weight(PT%BW) of trunk according to Sasang constitution(P<0.05). Conclusions : There is a significant difference in isokinetic strength on the TEF according to Sasang constitution.

Esophageal Reconstruction with Gastric Pull-up in a Premature Infant with Type B Esophageal Atresia

  • Han, Young Mi;Lee, Narae;Byun, Shin Yun;Kim, Soo-Hong;Cho, Yong-Hoon;Kim, Hae-Young
    • Neonatal Medicine
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    • v.25 no.4
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    • pp.186-190
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    • 2018
  • Esophageal atresia (EA) with proximal tracheoesophageal fistula (TEF; gross type B) is a rare defect. Although most patients have long-gap EA, there are still no established surgical guidelines. A premature male infant with symmetric intrauterine growth retardation (birth weight, 1,616 g) was born at 35 weeks and 5 days of gestation. The initial diagnosis was pure EA (gross type A) based on failure to pass an orogastric tube and the absence of stomach gas. A "feed and grow" approach was implemented, with gastrostomy performed on postnatal day 2. A fistula was detected during bronchoscopy for recurrent pneumonia; thus, we confirmed type B EA and performed TEF excision and cervical end esophagostomy. As the infant's stomach volume was insufficient for bolus feeding after reaching a body weight of 2.5 kg, continuous tube feeding was provided through a gastrojejunal tube. On the basis of these findings, esophageal reconstruction with gastric pull-up was performed on postnatal day 141 (infant weight, 4.7 kg), and he was discharged 21 days postoperatively. At 12 months after birth, there was no catch-up growth; however, he is currently receiving a baby food diet without any complications. In patients with EA, bronchoscopy is useful for confirming TEF, whereas for those with long-gap EA with a small stomach volume, esophageal reconstruction with gastric pull-up after continuous feeding through a gastrojejunal tube is worth considering.

Identification and Characterization of Macrophomina phaseolina Causing Leaf Blight on White Spider Lilies (Crinum asiaticum and Hymenocallis littoralis) in Malaysia

  • Huda-Shakirah, Abd Rahim;Kee, Yee Jia;Hafifi, Abu Bakar Mohd;Azni, Nurul Nadiah Mohamad;Zakaria, Latiffah;Mohd, Masratul Hawa
    • Mycobiology
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    • v.47 no.4
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    • pp.408-414
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    • 2019
  • Crinum asiaticum and Hymenocallis littoralis, commonly known as spider lilies are bulbous perennial and herbaceous plants that widely planted in Malaysia as ornamental. During 2015-2016, symptom of leaf blight was noticed on the hosts from several locations in Penang. The symptom appeared as irregular brown to reddish lesions surrounded by yellow halos. As the disease progressed, the infected leaves became blighted, dried, and fell off with the presence of black microsclerotia and pycnidia on the lesions parts. The present study was conducted to investigate the causal pathogen of leaf blight on C. asiaticum and H. littoralis. Based on morphological characteristics and DNA sequences of internal transcribed spacer (ITS) region and translation elongation factor 1-alpha (TEF1-α) gene, the causal pathogen was identified as Macrophomina phaseolina. Phylogenetic analysis of combined dataset of ITS and TEF1-α grouped the isolates studied with other isolates of M. phaseolina from GenBank. The grouping of the isolates was supported by 96% bootstrap value. Pathogenicity test proved the role of the fungus in causing leaf blight on both hosts.

Population Structure of Fusarium graminearum from Maize and Rice in 2009 in Korea

  • Lee, Seung-Ho;Lee, Jung-Kwan;Nam, Young-Ju;Lee, Soo-Hyung;Ryu, Jae-Gee;Lee, Theresa
    • The Plant Pathology Journal
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    • v.26 no.4
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    • pp.321-327
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    • 2010
  • We performed diagnostic PCR assays and a phylogenetic analysis using partial sequences of TEF1 (translation elongation factor-1) to determine the trichothecene chemotypes and genetic diversity of F. graminearum isolates from maize and rice samples collected in 2009 in Korea. PCR using a species-specific primer set revealed a total of 324 isolates belonging to the putative F. graminearum species complex. PCR with trichothecene chemotypespecific primers revealed that the nivalenol (NIV) chemotype was predominant among the fungal isolates from rice (95%) in all provinces examined. In contrast, the predominant chemotype among the corn isolates varied according to region. The deoxynivalenol (DON) chemotype was found more frequently (66%) than the NIV chemotype in Gangwon Province, whereas the NIV chemotype (70%) was predominant in Chungbuk Province. Phylogenetic analysis showed that all DON isolates examined were clustered into lineage 7, while the NIV isolates resided within lineage 6 (F. asiaticum). Compared with previous studies, the lineage 6 isolates in rice have been predominantly maintained in southern provinces, while the dominance of lineage 7 in maize has been evident in Gangwon at a slightly reduced level.

Neopestalotiopsis Leaf Blight, an Emerging Concern on Leatherleaf Fern in Indonesia

  • Ani Widiastuti;Indah Khofifah Aruan;Alvina Clara Giovanni;Barokati Tsaniyah;Tri Joko;Achmadi Priyatmojo
    • Research in Plant Disease
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    • v.30 no.1
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    • pp.82-87
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    • 2024
  • Leatherleaf fern (Rumohra adiantiformis) is an important ornamental plant in Indonesia and global. Green fern leaves with bold dark green color with long shelf-life, attract florists as decoration. Indonesia is one important leatherleaf fern exporters, however currently an outbreak of leaf blight decreased production significantly. Initial symptom was reddish brown spots from edge of leaf, which was gradually followed by dark-brown necrotic lesions causing leaf blight and dried. This is a study to do Koch-Postulate approach and molecular identification, to identify the pathogen of the "new emerging disease" reported. Based on multigene analysis using primers from ITS, β-tub and tef1-α gene markers, the pathogen was identified as Neopestalotiopsis sp. All sequences have been deposited in GenBank with accession number of OR905551 (ITS), OR899817 (ßtubulin) and OR899816 (TEF). This Neopestalotiopsis leaf blight causes an emerging concern in leatherleaf fern in Indonesia and global biosecurity because it infected an export commodity.

Four Endophytic Ascomycetes New to Korea: Cladosporium anthropophilum, C. pseudocladosporioides, Daldinia eschscholtzii, and Nigrospora chinensis

  • Lee, Dong Jae;Lee, Jae Sung;Lee, Hyang Burm;Choi, Young-Joon
    • The Korean Journal of Mycology
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    • v.47 no.3
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    • pp.187-197
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    • 2019
  • Ascomycota is the largest phylum of the Fungi, including approximately 6,600 genera. They are often isolated from soils, indoor air, and freshwater environments, but also from plants as pathogens or endophytes. In this study, four species of Ascomycota (two of Cladosporium and one of each Daldinia and Nigrospora) were collected from the leaves of four woody plants (Camellia japonica, Ginkgo biloba, Quercus sp., Vitis vinifera). Their cultural characteristics were investigated on five different media (PDA, V8A, CMA, MEA, CZA) at 3 days after incubation at $25^{\circ}C$ in darkness. BLASTn search and phylogenetic analysis were performed using the internal transcribed spacer (ITS) rDNA sequences, in addition to tef1 gene sequences for Cladosporium species. Based on the cultural, morphological, and phylogenetic data, the isolates were identified as Cladosporium anthropophilum, Cladosporium pseudocladosporioides, Daldinia eschscholtzii, and Nigrospora chinensis. Previously, some members of Cladosporium and Nigrospora have been recorded as endophytes inhabiting the leaves and stems of various plants, whereas Daldinia eschscholtzii is a wood-inhabiting endophyte or wood-decaying fungus. To our knowledge, this is the first report of these four ascomycetes in Korea.

헬기 로터시스템 진동 제어를 위한 신기술 동향- TEF (Trailing Edge Flap) 중심으로-

  • Kim, Deok-Gwan;Kim, Do-Hyeong;Hong, Dan-Bi;Gi, Yeong-Jung;Lee, Je-Dong;Kim, Seung-Ho
    • Current Industrial and Technological Trends in Aerospace
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    • v.4 no.1
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    • pp.34-43
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    • 2006
  • 헬기는 비행에 필요한 추력, 모멘트 및 조종력을 회전하는 로터시스템에서 발생시키기 때문에 근본적으로 진동이 많이 생기는 항공기이다. 로터시스템의 회전에 의해 발생되는 진동소스를 제어함으로써 헬기 동체에 전달되는 진동을 감소시키고자 하는 연구들이 지금까지 수많이 진행되었다. 이러한 연구들을 크게 두 가지로 분류하면, 수동적 진동제어 방법과 능동적 진동제어 방법으로 나눌 수 있다. 수동적 진동제어 방법은 그간 오랫동안 연구되어 현재 운용 헬기에 실제적으로 적용되고 있으나 능동적 진동제어 방법은 최근까지 활발한 연구가 진행되고 있는 상태이다. 본 논문의 서론에서는 헬기 진동제어를 위한 일반적인 방법에 대한 개요를 소개하였다. 본문은 로터시스템 진동제어 기술 중 최근까지 연구가 진행되고 있는 능동적 진동제어 방법을 중심으로 기술하였다. 특히 최근 비행시험에 성공하여 거의 실용화 단계에 이르고 있는 PZT를 이용한 Trailing Edge Flap 기술, Active Twist Rotor 등을 중점적으로 소개하였다. 마지막으로 유로콥터 BK117의 ADASYS 로터 시스템 성공사례 및 향후 해결해야 할 기술적 제한사항 등을 간략하게 기술하였다.

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