• The Korean Journal of Mycology
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• v.47 no.4
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• pp.303-311
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• 2019

An identification key to twenty-nine species of Porina known from Vietnam is provided. In addition, new records of Porina eminentior, P. meridionalis and P. nuculastrum are described from the protected rain forests in southern Vietnam. A detailed taxonomic account of the newly reported species is provided and supported by its ecology, distribution, and illustrations.

• Journal of Species Research
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• v.6 no.spc
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• pp.15-25
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• 2017

Twelve ciliates were collected from freshwater, marine, and brackish water habitats in Korea and taxonomic descriptions are provided based on observations of living cells and protargol-impregnated specimens. These ciliates, recorded for the first time in Korea, were classified into 12 genera, 11 families, 10 orders, and five classes. We provide brief descriptions and remarks, including microphotographs, for the 12 ciliates: Allotricha mollis, Amphileptus eigneri, Didinium gargantua, Holophrya teres, Lacrymaria marina, Novistrombidium apsheronicum, Pelagostrobilidium conicum, Pseudochilodonopsis fluviatilis, Pseudourostyla subtropica, Strombidium conicum, Urocentrum turbo, and Uronema marinum.

• Journal of Species Research
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• v.11 no.4
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• pp.343-345
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• 2022

The classification system of Collybiopsis has been updated to contain some species of Collybiopsis, Gymnopus sect. Vestipedes, and Marasmiellus. Recently, we conducted the taxonomic study of Korean Collybiopsis to reflect the current classification system and confirmed 16 species. We propose their Korean names in this research note.

• Journal of Plant Biotechnology
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• v.38 no.1
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• pp.9-14
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• 2011

To determine whether pattern recognition based on metabolite fingerprinting for whole cell extracts can be used to discriminate cultivars metabolically, leaves of nine commercial Orostachys plants were subjected to Fourier transform infrared spectroscopy (FT-IR). FT-IR spectral data from leaves were analyzed by principal component analysis (PCA) and Partial least square discriminant analysis (PLS-DA). The dendrogram based on hierarchical clustering analysis of these PLS-DA data separated the nine Orostachys species into five major groups. The first group consisted of O. iwarenge 'Yimge', 'Jeju', 'Jeongsun' and O. margaritifolius 'Jinju' whereas in the second group, 'Sacheon' was clustered with 'Busan,' both of which belong to O. malacophylla species. However, 'Samchuk', belong to O. malacophylla was not clustered with the other O. malacophylla species. In addition, O. minuta and O. japonica were separated to the other Orostachys plants. Thus we suggested that the hierarchical dendrogram based on PLS-DA of FT-IR spectral data from leaves represented the most probable chemotaxonomical relationship between commercial Orostachys plants. Furthermore these metabolic discrimination systems could be applied for reestablishment of precise taxonomic classification of commercial Orostachys plants.

• Korean Journal of Ecology and Environment
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• v.37 no.2 s.107
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• pp.149-179
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• 2004

In order to understand the taxonomic and ecologic characteristics on ciliates plankton, surface water samples were collected once a weekly from March 2001 to December 2001 except once a monthly from December 2001 to January 2001 and twice a monttdy at February 2001 at Pal'tang reservoir in Korea. Totally 12 species belonging to 10 genera in 7 families of 6 order, were identified and all species new record in Korea. All of them had been recorded in eutrophic water bodies. Succession of dominant species occurred obviously according to seasonality. Large -sized Codonella cratera, Rimostrombidium lacustris, Strobilidium caudatum, Limnostrombidium viride, Pelagostrombidium fallax, Stylonychia sp., Pseudostrombidium plaktonticum and Phascolodon vorticella dominated during the period of outbreak of nanophytoplankton in winter to spring. However, small-sized Rimostrombidium hyalinum, rimostrombidium brachykinetum, Halteria gradinella and Vorticella convallaria occurred when the bacteria abundance increased in summer to autumn.

• Applied Biological Chemistry
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• v.38 no.3
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• pp.196-201
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• 1995

Chemo- and numerical taxonomic studies on the isolate SL-387 producing novel aminopeptidase M inhibitors MR-387A and B were carried out The genus of the isolate was determined as Streptomyces by cultural and morphological data and chemical indices. Forty one taxonomic unit characters were tested for determining the species of the isolate, and the data were analyzed numerically using a computer program as called TAXON. The isolate was best matched to Streptomyces neyagawaensis in the major cluster 18 of Streptomyces with $S_{SM}$ value of 75.67%. On the base of chemotaxonomic data and TAXON analysis, the isolate SL-387 was identified to be a member of Streptomyces neyagawaensis.

• Journal of Ecology and Environment
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• v.47 no.4
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• pp.219-227
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• 2023

The US National Science Foundation's National Ecological Observatory Network (NEON) is a continental-scale program intended to provide open data, samples, and infrastructure to understand changing ecosystems for a period of 30 years. NEON collects co-located measurements of drivers of environmental change and biological responses, using standardized methods at 81 field sites to systematically sample variability and trends to enable inferences at regional to continental scales. Alongside key atmospheric and environmental variables, NEON measures the biodiversity of many taxa, including microbes, plants, and animals, and collects samples from these organisms for long-term archiving and research use. Here we review the composition and use of NEON resources to date as a whole and specific to biodiversity as an exemplar of the potential of national research infrastructure to contribute to globally relevant outcomes. Since NEON initiated full operations in 2019, NEON has produced, on average, 1.4 M records and over 32 TB of data per year across more than 180 data products, with 85 products that include taxonomic or other organismal information relevant to biodiversity science. NEON has also collected and curated more than 503,000 samples and specimens spanning all taxonomic domains of life, with up to 100,000 more to be added annually. Various metrics of use, including web portal visitation, data download and sample use requests, and scientific publications, reveal substantial interest from the global community in NEON. More than 47,000 unique IP addresses from around the world visit NEON's web portals each month, requesting on average 1.8 TB of data, and over 200 researchers have engaged in sample use requests from the NEON Biorepository. Through its many global partnerships, particularly with the Global Biodiversity Information Facility, NEON resources have been used in more than 900 scientific publications to date, with many using biodiversity data and samples. These outcomes demonstrate that the data and samples provided by NEON, situated in a broader network of national research infrastructures, are critical to scientists, conservation practitioners, and policy makers. They enable effective approaches to meeting global targets, such as those captured in the Kunming-Montreal Global Biodiversity Framework.

• The Plant Pathology Journal
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• v.40 no.2
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• pp.171-191
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• 2024

Identification of Helicotylenchus species is very challenging due to phenotypic plasticity and existence of cryptic species complexes. Recently, the use of rDNA barcodes has proven to be useful for identification of Helicotylenchus. Molecular markers are a quick diagnostic tool and are crucial for discriminating related species and resolving cryptic species complexes within this speciose genus. However, DNA barcoding is not an error-free approach. The public databases appear to be marred by incorrect sequences, arising from sequencing errors, mislabeling, and misidentifications. Herein, we provide a comprehensive analysis of the newly obtained, and published DNA sequences of Helicotylenchus, revealing the potential faults in the available DNA barcodes. A total of 97 sequences (25 nearly full-length 18S-rRNA, 12 partial 28S-rRNA, 16 partial internal transcribed spacer [ITS]-rRNA, and 44 partial cytochrome c oxidase subunit I [COI] gene sequences) were newly obtained in the present study. Phylogenetic relationships between species are given as inferred from the analyses of 103 sequences of 18S-rRNA, 469 sequences of 28S-rRNA, 183 sequences of ITS-rRNA, and 63 sequences of COI. Remarks on suggested corrections of published accessions in GenBank database are given. Additionally, COI gene sequences of H. dihystera, H. asiaticus and the contentious H. microlobus are provided herein for the first time. Similar to rDNA gene analyses, the COI sequences support the genetic distinctness and validity of H. microlobus. DNA barcodes from type material are needed for resolving the taxonomic status of the unresolved taxonomic groups within the genus.

• Korean journal of applied entomology
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• v.52 no.2
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• pp.85-91
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• 2013

A diverse range of taxonomic confusions are brought forth since past taxonomic information including major errors following its initial provision of some uncertain information has repeatedly been applied to Korean Vespidae in its identification. Thus, this study, which made a final summarization of research on Vespidae, provided the list of Korean Vespidae determined except for Eumeninae, with their distributional data. A total of 30 species (including 3 subspecies) belonging to 5 genera of 2 subfamilies are listed: subfamily Vespinae (3 genera/ 18 species) and subfamily Polistinae (2 genera/ 12 species).

• Mycobiology
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• v.42 no.1
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• pp.22-26
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• 2014

The diversity of the genus Megacollybia in Korea was examined based on morphological observation and analysis of molecular data. Currently, the genus is consisted of nine species with a global distribution. However, only M. platyphylla has been reported in the floral survey of Korea. During our re-evaluation of the taxonomic diversity of Megacollybia in Korea, six Megacollybia specimens collected in 2012 were identified based on internal transcribed spacer (ITS) sequences and morphology. Here, we report two Megacollybia species, M. clitocyboidea and M. marginata, as newly recorded species from Korea. The microscopic features of the two species are provided in this study. To our knowledge, this is the first phylogenetic analysis of Korean Megacollybia species.