• Title/Summary/Keyword: structure sensitivity study

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The COP9 Signalosome Network in Eukaryotic Microorganisms (진핵 미생물에서의 COP9 signalosome의 역할)

  • Cheon, Yeongmi;Lee, Soojin
    • The Korean Journal of Mycology
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    • v.41 no.1
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    • pp.1-8
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    • 2013
  • COP9 signalosome (CSN), which is originally identified as the regulator of the photomorphogenic development in plant, is highly conserved protein complex in diverse eukaryotic organisms. Most eukaryotic CSN complex is composed of 8 subunits, which is structurally and functionally similar to the lid subunit of 26S proteasome and eIF3 translation initiation complex. CSN play important functions in the regulation of cell cycle and checkpoint response by controlling Cullin-Ring E3 ubiquitin ligases (CRL) activities. CSN exhibits an isopeptidase activity which cleaves the neddylated moiety of cullin components. In fission yeast, S-phase cell cycle progression was delayed and the sensitivity to g-ray or UV was increased in CSN1 and CSN2 deletion mutants, indicating that yeast CSN is also involved in the checkpoint regulation. CSN in fungal system more closely resembles that of the higher organisms in the structure and assembly of their components. Functionally, CSN is associated with the regulation of conidiation rhythms in Neurospora crassa and the sexual development in Aspsergillus nidulans. Recent studies also revealed that CSN functions as an essential cell cycle regulator, playing key roles in the regulation of DNA replication and DNA damage response in Aspergillus. Overall, CSN of microorganisms, such as fission yeast and fungi, share functionally common aspects with higher organisms, implying that they can be useful tools to study the role of CSN in the CRL-mediated diverse cellular activities.

Comparison of the Susceptibility of Freshwater Organisms for the Acute Toxicity Test of Pesticides. (농약의 급성독성 평가를 위한 담수생물의 감수성 비교연구)

  • Shin, Chun-Chul;Lee, Sung-Kyu;Roh, Jung-Koo
    • Korean Journal of Environmental Agriculture
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    • v.5 no.2
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    • pp.130-134
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    • 1986
  • This study was performed to determine the aquatic toxicity of 3 chemicals(butachlor, trichlorfon, and BPMC) to 3 teat organisms (fish, crustacean, and algae) which represent each trophic level in freshwater ecosystem, and to compare the sensitivity of these organisms to 3 chemicals with short-term test. Scenedesmus subspicatus, unicellular algae, was the most sensitive species of 3 organisms to butachlor and the ratio between least and most sensitive organisms was 5.7. Moina rectirostris, freshwater invertebrate, was also more sensitive organism than S. subspicatus and Oryzias latipes to trichlorfon and BPMC, and their ratios were 260,000 and 5,090. As a result, remarkable differences were observed in the sensitivities among the test organisms with different chemical structure and mode of action of the chemicals. Therefore, it is recommended that a set of tests on different species, including the representative species of fish, invertebrate, and algae, should be required in short-term aquatic toxicity test for chemicals introduced into the Korean environment.

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Investigation of image preprocessing and face covering influences on motion recognition by a 2D human pose estimation algorithm (모션 인식을 위한 2D 자세 추정 알고리듬의 이미지 전처리 및 얼굴 가림에 대한 영향도 분석)

  • Noh, Eunsol;Yi, Sarang;Hong, Seokmoo
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.21 no.7
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    • pp.285-291
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    • 2020
  • In manufacturing, humans are being replaced with robots, but expert skills remain difficult to convert to data, making them difficult to apply to industrial robots. One method is by visual motion recognition, but physical features may be judged differently depending on the image data. This study aimed to improve the accuracy of vision methods for estimating the posture of humans. Three OpenPose vision models were applied: MPII, COCO, and COCO+foot. To identify the effects of face-covering accessories and image preprocessing on the Convolutional Neural Network (CNN) structure, the presence/non-presence of accessories, image size, and filtering were set as the parameters affecting the identification of a human's posture. For each parameter, image data were applied to the three models, and the errors between the actual and predicted values, as well as the percentage correct keypoints (PCK), were calculated. The COCO+foot model showed the lowest sensitivity to all three parameters. A <50% (from 3024×4032 to 1512×2016 pixels) reduction in image size was considered acceptable. Emboss filtering, in combination with MPII, provided the best results (reduced error of <60 pixels).

Studies on resveratrol and its metabolite in human urine by GC/MS (GC/MS를 이용한 요 중 resveratrol과 그 대사체에 관한 연구)

  • Jung, Hyun-Joo;Paeng, Ki-Jung;Kim, Yun-Je
    • Analytical Science and Technology
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    • v.24 no.2
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    • pp.142-149
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    • 2011
  • This study was conducted to define metabolite of the resveratrol by gas chromatography- time-offlight mass spectrometric detection. From these results, we suppose that the structure of metabolite is the result of reduction of double-bond attached by two-phenyl groups. Also, validity of method for determining metabolite of resveratrol and endogenous steroids was tested. The recoveries ranged from 96.47 to 114.74%, and intraand inter-day precision ranged 11.40 - 10.87% and 1.10 - 10.93%, accuracy ranged 80.03 - 119.92% and 80.02 - 119.56%, respectively. Resveratrol and endogenous steroids had correlation coefficients above or equal to 0.996. The method was successfully validated for the determination of resveratrol and endogenous steroids. Urinary samples from volunteers dosed resveratrol were analyzed to confirm a correlation resveratrol and its metabolite. From these results, the highest level of resveratrol and its metabolite was excreted in 10 - 15 hr more slowly than common drug, and conversion rate of metabolite was higher in woman than that in man. In addition, endogenous steroids were shown same the highest level of 10 - 15 hr. For estrone and estradiol, sensitivity was relatively higher in female than in man. And there were no significant changes of excretion patterns in the other endogenous steroids. Thus, we assumed that activation of resveratrol has impact on woman than man.

Preliminary Design of the NISS onboard NEXTSat-1

  • Jeong, Woong-Seob;Park, Sung-Joon;Moon, Bongkon;Lee, Dae-Hee;Park, Won-Kee;Lee, Duk-Hang;Ko, Kyeongyeon;Pyo, Jeonghyun;Kim, Il-Joong;Park, Youngsik;Nam, Ukwon;Park, Chan;Im, Myungshin;Lee, Hyung Mok;Lee, Jeong-Eun;Shin, Goo-Hwan;Chae, Jangsoo;Matsumoto, Toshio
    • The Bulletin of The Korean Astronomical Society
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    • v.39 no.2
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    • pp.102-102
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    • 2014
  • The NISS (Near-infrared Imaging Spectrometer for Star formation history) onboard NEXTSat-1 is the near-infrared instrument onboard NEXTSat-1 which is being developed by KASI. The main scientific targets are nearby galaxies, galaxy clusters, star-forming regions and low background regions in order to study the cosmic star formation history in local and distant universe. After the Preliminary Design Review, we have fixed major specifications of the NISS. The off-axis optical design with 15cm apertureis optimized to obtain a wide field of view ($2deg.{\times}2deg.$), while minimizing the sensitivity loss. The opto-mechanical structure of the NISS was designed to be safe enough to endure in the launching condition as well as the space environment. The tolerance analysis was performed to cover the wide wavelength range from 0.95 to $3.8{\mu}m$ and to reduce the degradation of optical performance due to thermal variation at the target temperature, 200K. The $1k{\times}1k$ infrared sensor is operated in the dewar at 80K stage. We confirmed that the NISS can be cooled down to below 200K in the nominal orbit through a radiative cooling. Here, we report the preliminary design of the NISS.

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Characterization of Pv92, a Novel Merozoite Surface Protein of Plasmodium vivax

  • Lee, Seong-Kyun;Wang, Bo;Han, Jin-Hee;Nyunt, Myat Htut;Muh, Fauzi;Chootong, Patchanee;Ha, Kwon-Soo;Park, Won Sun;Hong, Seok-Ho;Park, Jeong-Hyun;Han, Eun-Taek
    • Parasites, Hosts and Diseases
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    • v.54 no.4
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    • pp.385-391
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    • 2016
  • The discovery and understanding of antigenic proteins are essential for development of a vaccine against malaria. In Plasmodium falciparum, Pf92 have been characterized as a merozoite surface protein, and this protein is expressed at the late schizont stage, but no study of Pv92, the orthologue of Pf92 in P. vivax, has been reported. Thus, the protein structure of Pv92 was analyzed, and the gene sequence was aligned with that of other Plasmodium spp. using bioinformatics tools. The recombinant Pv92 protein was expressed and purified using bacterial expression system and used for immunization of mice to gain the polyclonal antibody and for evaluation of antigenicity by protein array. Also, the antibody against Pv92 was used for subcellular analysis by immunofluorescence assay. The Pv92 protein has a signal peptide and a sexual stage s48/45 domain, and the cysteine residues at the N-terminal of Pv92 were completely conserved. The N-terminal of Pv92 was successfully expressed as soluble form using a bacterial expression system. The antibody raised against Pv92 recognized the parasites and completely merged with PvMSP1-19, indicating that Pv92 was localized on the merozoite surface. Evaluation of the human humoral immune response to Pv92 indicated moderate antigenicity, with 65% sensitivity and 95% specificity by protein array. Taken together, the merozoite surface localization and antigenicity of Pv92 implicate that it might be involved in attachment and invasion of a merozoite to a new host cell or immune evasion during invasion process.

Multi-variable and Multi-site Calibration and Validation of SWAT for the Gap River Catchment (갑천유역을 대상으로 SWAT 모형의 다 변수 및 다 지점 검.보정)

  • Kim, Jeong-Kon;Son, Kyong-Ho;Noh, Jun-Woo;Jang, Chang-Lae;Ko, Ick-Hwan
    • Journal of Korea Water Resources Association
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    • v.39 no.10 s.171
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    • pp.867-880
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    • 2006
  • Hydrological models with many parameters and complex model structures require a powerful and detailed model calibration/validation scheme. In this study, we proposed a multi-variable and multi-site calibration and validation framework for the Soil Water Assessment Tool (SWAT) model applied in the Gap-cheon catchment located downstream of the Geum river basin. The sensitivity analysis conducted before main calibration helped understand various hydrological processes and the characteristics of subcatchments by identifying sensitive parameters in the model. In addition, the model's parameters were estimated based on existing data prior to calibration in order to increase the validity of model. The Nash-Sutcliffe coefficients and correlation coefficient were used to estimate compare model output with the observed streamflow data: $R_{eff}\;and\;R^2$ ranged 0.41-0.84 and 0.5-0.86, respectively, at the Heuduck station. Model reproduced baseflow estimated using recursive digital filter except for 2-5% overestimation at the Sindae and Boksu stations. Model also reproduced the temporal variability and fluctuation magnitude of observed groundwater levels with $R^2$ of 0.71 except for certain periods. Therefore, it was concluded that the use of multi-variable and multi-site method provided high confidence for the structure and estimated parameter values of the model.

Improved Vapor Recognition in Electronic Nose (E-Nose) System by Using the Time-Profile of Sensor Array Response (센서 응답의 Time-Profile 을 이용한 전자 후각 (E-Nose) 시스템의 Vapor 인식 성능 향상)

  • Yoon Seok, Yang
    • Journal of Biomedical Engineering Research
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    • v.25 no.5
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    • pp.329-334
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    • 2004
  • The electronic nose (E-nose) recently finds its applications in medical diagnosis, specifically on detection of diabetes, pulmonary or gastrointestinal problem, or infections by examining odors in the breath or tissues with its odor characterizing ability. The odor recognition performance of E-nose can be improved by manipulating the sensor array responses of vapors in time-profile forms. The different chemical interactions between the sensor materials and the volatile organic compounds (VOC's) leave unique marks in the signal profiles giving more information than collection of the conventional piecemal features, i.e., maximum sensitivity, signal slopes, rising time. In this study, to use them in vapor recognition task conveniently, a novel time-profile method was proposed, which is adopted from digital image pattern matching. The degrees of matching between 8 different vapors were evaluated by using the proposed method. The test vapors are measured by the silicon-based gas sensor array with 16 CB-polymer composites installed in membrane structure. The results by the proposed method showed clear discrimination of vapor species than by the conventional method.

Mass Spectrometry-Based Strategy for Effective Disulfide Bond Identification (질량분석기를 활용한 효과적 이황화결합 분석법 개발)

  • Jin, Jonghwa;Min, Hophil;Kwon, Oh-Seung;Oh, Hyun Jeong;Kim, Jongwon;Park, Chulhwan
    • Korean Chemical Engineering Research
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    • v.55 no.1
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    • pp.27-33
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    • 2017
  • The determination of disulfide bonds is important for comprehensive understanding of the chemical structure of protein. So far, many strategies for the disulfide bond analysis have been suggested in terms of speed and sensitivity. However, most of these strategies have not considered free thiol residues in the target protein in the process of determining the disulfide bond. We suggested the strategy which was composed of four steps for the identification of disulfide bonds; the first step was the prediction of possible disulfide bonds, the second step was the determination of free cysteine residues, the third step was the analysis of disulfide bond using a high-resolution mass spectrometry, and the final step was the determination of disulfide bonds based on the comprehensive verification. In this study, we performed the characterization of disulfide bonds for the recombinant protein (HRPE1), where 1 and 5 inter- and intra-chain disulfide bonds were identified, respectively.

A Study on the Test Results of 32 Gbps Observing System for Wideband VLBI Observation (광대역 VLBI 관측을 위한 32Gbps 관측장비의 시험결과 고찰)

  • Oh, Se-Jin;Yeom, Jae-Hwan;Roh, Duk-Gyoo;Jung, Dong-Kyu;Harada, Kenichi;Takezawa, Kosuke
    • Journal of the Institute of Convergence Signal Processing
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    • v.18 no.1
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    • pp.13-20
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    • 2017
  • In this paper, we evaluate the basic test results of the 32 Gbps observational equipment introduced as the back-end system for the wideband VLBI (Very Long Baseline Interferometry) observation of KVN (Korean VLBI Network). Radio astronomers want to make a large radio telescope that has excellent performance in order to observe the superfine structure of a celestial body, but a lot of money is needed. Therefore, in order to increase the sensitivity, the performance improvement of the receiving system and the method of observing the wide frequency bandwidth are introduced. To do this, we adopted a wideband sampling method for converting analog signals to digital with ultra-fast speeds and a wideband sampler for performing digital filtering in order to observe a wide observational frequency bandwidth. The wideband sampler (OCTAD-K) supports up to 16 Gsps-2bits sampling and supports a variety of observational bandwidth using digital filtering techniques. In particular, it is designed to support KVN's 4-frequency simultaneous observation system and VERA(VLBI Exploration of Radio Astrometry)'s 2-beam observation system. It can also support polKVN(Korean VLBI Network), KaVA(KVN and VERA Array), 32Gbps Direct Sampler, Digital Filter, Widebandarization observations and supports the standard VDIF(VLBI Data Interchange Format) format of observed data. In this paper, the performance of the system and the problem solving are described in detail after performing the factory inspection and field test before the system is introduced.

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