• Journal of Korean Society of Forest Science
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• v.100 no.1
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• pp.118-123
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• 2011

Pine (Pinus densiflora) forests of 315 sites were classified by applying the phytosociological method, TWINSPAN and DCA (detrended correspondence analysis). The floristic composition and diversity patterns of the vegetation types analyzed and documented. The vegetation types were classified 8 groups including 4 groups of Quercus mongolica type and 4 groups of Quercus serrata-Smilax china type. Taxonomically, Compositae was the most diverse family (21 genus, 45 species) and followed in order of Liliaceae (18 genus, 34 species), Rosaceae (17 genus, 34 species), and Leguminosae (15 genus, 25 species). The patterns of species richness, diveristy and evenness were significantly different among the vegetation types. In altitudinal pattern of species diversity, species richness monotonically decreased but species evenness increased with increasing altitude.

• Journal of Ecology and Environment
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• v.30 no.4
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• pp.315-318
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• 2007

Cooperative or non-territorial permanently social spiders are believed to have evolved from species showing subsocial maternal care. The transition from subsocial to cooperative social groups probably involved a transition from an outbreeding breeding system to one with inbreeding. Nepotistic recognition among siblings should facilitate the evolution of social cooperation through avoidance of inbreeding and maintenance of mutual tolerance between siblings. We conducted experiments to determine whether a mechanism for sibling recognition is present in the subsocial spider, Coelotes terrestris which displays extended maternal care in the form of food provisioning. The numbers of surviving individuals within unfed groups were observed and compared between non-sibling groups of ten spiderlings and groups of ten siblings. The number of survivors differed significantly between groups, with consistently fewer spiderlings surviving in the non-sibling groups than the sibling groups over the study period. This result suggests that sibling recognition and nepotism do occur in this subsocial species. The nepotism involved in the maternal social organization of the Coelotes might be an example of a preadaptation facilitating the evolution of permanent social life.

• Journal of the Korean Institute of Landscape Architecture
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• v.32 no.3
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• pp.18-31
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• 2004

Ecological network can solve the ecological problems such as habitat cutting and fragmentation that are resulted from urbanization. Recently, rooftop biotope construction has been appeared as a usefull method for ecological networking in urban area. The objective of this study is to seek the possibility of rooftop greening introduction as well as to select target species for rooftop greening construction from the urban ecological network point of view. In order to select target species, we monitored two adjacent rooftop greening sites, where we found 22 species of birds and insects and 33 species of plants. We set criteria to select target species through documents research, and gave marks species according to the criteria with the help of specialists. We divided the target species into 5 groups on the basis of the 12 selecting criteria. In those two monitored rooftop greening sites, we did not find any species belong to group A, which is the best target species, but we found species belong to the other groups. Orthetrum albistylum, Sympetrum dawinianum belong to group B, which is the priority target species, 7 species besides Passer montanus, Coccinella axyridis, Agrionidae to group C, which is the possible target species, 6 species besides Atractomorpha lata to group D, which is the potential target species, and the others were found to be inadequate to the target species. We found Orthetrum albistylum, Sympetrum dawi-nianum to be the best appropriate target species in the two sites. According to the result of this study, the method of ecological network construction from the dra-gonfly habitat network point of view through the construction of rooftop habitat is ideal for Orthetrum albistylum, and Sympetrum dawinianum. For successful urban ecological network construction, selection criteria and construction techniqes & methods for rooftop habitat should be developed through future research.

• Journal of Korean Society of Forest Science
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• v.95 no.2
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• pp.209-215
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• 2006

We investigated antioxidant capacity in leaves of 14 coniferous trees under field conditions. We focused on understanding the species characteristics on antioxidant systems and screening the coniferous tree species with the best antioxidant systems using their characteristics. The antioxidant capacity of 14 coniferous trees was divided into three groups. First group was Thuja orientalis and Chamaecyparis obtusa and those species had the highest content of ${\beta}$-carotene and xanthophyll. Second group, C. obtusa and Juniperus chinensis, used antioxidant enzymes to mitigate stress. C. obtusa represented high activity at superoxide dismutase (SOD), glutathione reductase (GR), and peroxidase (POD), and J. chinensis exhibited high activity at SOD, POD, catalase (CAT). Third group employed antioxidant such as ascorbic acid and ${\alpha}$-tocopherol. The antioxidant content of T. orientalis was the highest while that of Pinus parviflora and C. obtusa were the lowest. Few species belonged in three groups simultaneously, and most species belonged in at least one or two groups. In summary, we proposed that C. obtusa and T. orientalis had the highest antioxidant capacity while P. parviflora and P. desiflora for. multicalus had the lowest antioxidant capacity.

• The Plant Pathology Journal
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• v.21 no.3
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• pp.229-236
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• 2005

Molecular profIles of PCR-RFLP and sequence analysis of internal transcribed spacer (ITS) regions of rDNA were compared between morphologically distinguishable species of Trichoderma isolated from substrates of oyster mushroom in Korea, T. atroviride, T. citrinoviride, T. harzianum, T. longibrachiatum, T. virens, and two unidentified species, Trichoderma sp. 1 and 2. PCR­RFLP analysis divided the Trichoderma spp. into six RFLP groups, A, B, C, D, E, and F. The RFLP groups were generally agreed with described morphological species, except that the RFLP group A containing the two unidentified species. A neighbor-joining tree based on ITS sequences well supported RFLP groups observed by RFLP analysis of ITS regions of rDNA. Additionally, the two unidentified species, Trichoderma sp. 1 and 2, which could not be distinguished by PCR­RFLP analysis, were separated in sequence analysis of ITS regions of rDNA.

• Journal of Ecology and Environment
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• v.31 no.1
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• pp.75-81
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• 2008

Rates of molecular evolution are known to vary widely among taxonomic groups. A number of studies, examining various taxonomic groups, have indicated that body size is negatively and clutch size is positively correlated with the rates of nucleotide substitutions among vertebrate species. Generally, either smaller body mass or larger clutch size is associated with shorter generation times and higher metabolic rates. However, this generality is subject to ongoing debate, and large-scale comparative studies of species below the Order level are lacking. In this study, phylogenetically independent methods were used to test for relationships between rates of the mitochondrial cytochrome b evolution and a range of life history traits, such as body mass and clutch size in the Order Galliformes. This analysis included data from 67 species of Galliformes birds and 2 outgroup species in Anseriformes. In contrast to previous studies, taxa were limited to within-Order level, not to Class or higher. I found no evidence to support an effect of life history traits on the rate of molecular evolution within the Galliformes. These results suggest that such relationship may be too weak to be observed in comparisons of closely related species or may not be a general pattern that is applicable to all nucleotide sequences or all taxonomic groups.

• Journal of Environmental Science International
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• v.26 no.3
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• pp.373-380
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• 2017

This study identified the effect of changes in the riverbed on the benthic macroinvertebrate communities. The benthic macroinvertebrates collected from the surveyed sites belonged to 119 species, 65 families, 20 orders, and 7 classes in 4 phyla. The number of Ephemeroptera, Plecoptera, and Trichoptera (E.P.T) species was 42, 10, and 8, respectively, in the tributary, confluence, and Nakdong River sites. Lotic species (Hydropsychidae) showed a high density at the tributary sites, whereas lentic species (Chironomidae) showed a high density at the confluence and Nakdong River sites. Community analysis showed that the Dominance Index (DI) was 0.54 in tributary sites, and dominance indices increased closer to the Nakdong River sites. The diversity index (H') was inversely proportional to DI. The ratio of Burrowers species (BU) at the surveyed sites increased closer to the Nakdong River sites. Analysis of common species showed 37 species (34.6%) between the tributary and confluence sites and 66 species (51.5%) between the confluence and Nakdong River sites.

• Animal Systematics, Evolution and Diversity
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• v.39 no.3
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• pp.99-113
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• 2023

The nudibranch is one of the most colorful gastropod species found in oceans worldwide. Unlike many other gastropod groups, the nudibranch loses an external shell in the adult stage, but instead develops various chemical defense systems. More than 2,500 nudibranch species have been reported worldwide, and 73 species are currently recorded in Korean waters. In this study, we present morphological descriptions, DNA barcode information of mtDNA cox1 sequence, and taxonomic review for five nudibranch species: Apata pricei (MacFarland, 1966), Doto rosacea Baba, 1949, Janolus toyamensis Baba and Abe, 1970, Polycera abei (Baba, 1960), and Trinchesia sibogae (Bergh, 1905). Of these, we also provide in-depth discussion of taxonomic issue of A. pricei that was previously subdivided into two subspecies, A. pricei pricei and A. pricei komandorica. Our morphological examination and molecular analyses of the mtDNA cox1 sequences indicate that these two subspecies are not taxonomically warranted. The phylogenetic information for the other nudibranch species from mtDNA cox1 sequence analysis is also included, providing a molecular basis for species identification and inferring their local phylogenies within each of the species groups discussed herein.

• The Plant Pathology Journal
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• v.33 no.2
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• pp.148-162
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• 2017

As a step towards discovering novel pathogenesis-related proteins, we performed a genome scale computational identification and characterization of secreted and transmembrane (TM) proteins, which are mainly responsible for bacteria-host interactions and interactions with other bacteria, in the genomes of six representative Burkholderia species. The species comprised plant pathogens (B. glumae BGR1, B. gladioli BSR3), human pathogens (B. pseudomallei K96243, B. cepacia LO6), and plant-growth promoting endophytes (Burkholderia sp. KJ006, B. phytofirmans PsJN). The proportions of putative classically secreted proteins (CSPs) and TM proteins among the species were relatively high, up to approximately 20%. Lower proportions of putative type 3 non-classically secreted proteins (T3NCSPs) (~10%) and unclassified non-classically secreted proteins (NCSPs) (~5%) were observed. The numbers of TM proteins among the three clusters (plant pathogens, human pathogens, and endophytes) were different, while the distribution of these proteins according to the number of TM domains was conserved in which TM proteins possessing 1, 2, 4, or 12 TM domains were the dominant groups in all species. In addition, we observed conservation in the protein size distribution of the secreted protein groups among the species. There were species-specific differences in the functional characteristics of these proteins in the various groups of CSPs, T3NCSPs, and unclassified NCSPs. Furthermore, we assigned the complete sets of the conserved and unique NCSP candidates of the collected Burkholderia species using sequence similarity searching. This study could provide new insights into the relationship among plant-pathogenic, humanpathogenic, and endophytic bacteria.

• Korean Journal of Ichthyology
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• v.26 no.4
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• pp.322-330
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• 2014

The fish species and groups were investigated at the four streams in Goseong from September 2011 to August 2012. During the survey period, 17 species from Goseong stream, 18 species from Maam stream, 20 species from Guman stream, and 15 species from Baedun stream of fish were collected. Four creek downstreams were classified into 2 groups which were categorized by the effects of seawater. Group A is Guman and Maam streams with no estuary barrage, with the exchange of freshwater and seawater. On the other hand, group B is Goseong and Beadun streams which was blocked by the estuary barrage and submerged weir. The former group was mainly consisted of peripheral freshwater fish species such as Tridentiger brevispinis, Gymnogobius castaneus, Mugli cephalus, and Acanthogobius flavimanus. The latter one was composed of primary freshwater fish species such as Zacco koreanus, Squalidus gracilis majimae, and Pseudorasbora parva. These results suggest that estuary barrage and submerged weir in the stream could change the natural flow of seawater and freshwater, resulting in change of fish species and groups.