• Korean Journal of Microbiology
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• v.53 no.4
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• pp.326-328
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• 2017

Herbaspirillum sp. meg3 belonging to Betaproteobacteria was isolated from soil in Jeju island. Here, we report the complete genome sequence of strain meg3 with a size of approximately 5.47 Mb and a mean G + C content of 57.1%. The genome included 4,816 coding sequences, and 9 ribosomal RNA and 51 transfer RNA genes. In the genome, two incomplete prophage regions have been identified. Also, we propose that strain meg3 has a potential capability for aromatic-compounds degradation based on the result of genome analysis.

• Geomechanics and Engineering
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• v.35 no.1
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• pp.1-11
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• 2023

A growing trend of utilizing helical piles for soft soil strata to support infrastructure projects is currently observed in Saemangeum, South Korea. Recognized mainly due to its ease of installation and reusability proves to be far more superior compared to other foundation types in terms of sustainability. This study applies modified p-y springs to characterize the behavior of a laterally loaded helical pile with a shaft diameter of 89.1 mm affixed with 3 helices evenly spaced along its embedded length of 2.5 m. Geotechnical soil properties are correlated from CPT data near the test bed vicinity and strain gauges mounted on the shaft surface. A modification factor is applied on the p-y springs to adjust the simulated data and match it to the bending moment, soil resistance and deflection values from the strain gauge measurements. The predicted lateral behavior of the helical pile through the numerical analysis method shows fairly good agreement to the recorded field test results.

• Geomechanics and Engineering
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• v.36 no.3
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• pp.277-293
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• 2024

Shored Mechanically Stabilized Earth (SMSE) walls are types of soil retaining structures that increase soil stability under static and dynamic loads. The damage caused by an earthquake can be determined by evaluating the probabilistic seismic response of SMSE walls. This study aimed to assess the seismic performance of SMSE walls and provide fragility curves for evaluating failure levels. The generated fragility curves can help to improve the seismic performance of these walls through assessing and controlling variables like backfill surface settlement, lateral deformation of facing, and permanent relocation of the wall. A parametric study was performed based on a non-linear elastoplastic constitutive model known as the hardening soil model with small-strain stiffness, HSsmall. The analyses were conducted using PLAXIS 2D, a Finite Element Method (FEM) program, under plane-strain conditions to study the effect of the number of geogrid layers and the axial stiffness of geogrids on the performance of SMSE walls. In this study, three areas of damage (minor, moderate, and severe) were observed and, in all cases, the wall has not completely entered the stage of destruction. For the base model (Model A), at the highest ground acceleration coefficient (1 g), in the moderate damage state, the fragility probability was 76%. These values were 62%, and 54%, respectively, by increasing the number of geogrids (Model B) and increasing the geogrid stiffness (Model C). Meanwhile, the fragility values were 99%, 98%, and 97%, respectively in the case of minor damage. Notably, the probability of complete destruction was zero percent in all models.

• Microbiology and Biotechnology Letters
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• v.52 no.1
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• pp.94-96
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• 2024

Pseudarthrobacter sp. IC2-21 is isolated from the greenhouse soil in Icheon, Gyeonggi, Korea. This strain IC2-21 is a first fluquinconazole degrading soil bacterium. We analyze the whole genome sequence of Pseudarthrobacter sp. IC2-21. The sequence analysis revealed that Pseudarthrobacter sp. IC2-21 possesses a single 4,265,009 bps circular chromosome with a DNA G+C-content of 65.4%. This chromosome contains 3,942 protein-coding sequences and 12 rRNA and 51 tRNA genes. In the result of sequence analysis, it is revealed that strain IC2-21 possessed genes coding the triazole pesticides degradation related enzymes, such as oxygenase, and fluquinconazole degradation related genes.

• Journal of Microbiology and Biotechnology
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• v.33 no.7
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• pp.909-914
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• 2023

While searching for the bacteria which are responsible for degradation of pesticide in soybean field soil, a novel bacterial strain, designated 5-5^T, was isolated. The cells of the strain were Gram-staining-positive, aerobic and non-motile rods. Growth occurred at 10-42℃ (optimum, 30℃), pH 5.5-9.0 (optimum, pH 7.0-7.5), and 0-2% (w/v) NaCl (optimum, 1%). The predominant fatty acids were C_15:0 anteiso, C_17:0 anteiso, and summed feature 8 (C_18:1 ω7c and/or C_18:1 ω6c). The predominant menaquinone was MK-9 (H₂). Diphosphatidylglycerol, glycolipids, phosphatidylinositol, and phosphatidylglycerol were the major polar lipids. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain 5-5^T is a member of the genus Sinomonas and its closest relative is Sinomonas humi MUSC 117^T, sharing a genetic similarity of 98.4%. The draft genome of strain 5-5^T was 4,727,205 bp long with an N50 contig of 4,464,284 bp. Genomic DNA G+C content of strain 5-5^T was68.0 mol%. The average nucleotide identity (ANI) values between strain 5-5^T and its closest strains S. humi MUSC 117^T and S. susongensis A31^T were 87.0, and 84.3 % respectively. In silico DNA-DNA hybridization values between strain 5-5^T and its closest strains S. humi MUSC 117^T and S. susongensis A31^T were 32.5% and 27.9% respectively. Based on the ANI and in silico DNA-DNA hybridization analyses, the 5-5^T strain was considered as novel species belonging to the genus Sinomonas. On the basis of the results from phenotypic, genotypic and chemotaxonomic analyses, strain 5-5^T represents a novel speciesof the genus Sinomonas, for which the name Sinomonas terrae sp. nov. is proposed. The type strain is 5-5^T (=KCTC 49650^T =NBRC 115790^T).

• Proceedings of the Earthquake Engineering Society of Korea Conference
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• 2000.04a
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• pp.443-450
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• 2000

In this study a numerical method for soil-pile interaction analysis buried in multi-layered half planes is presented in frequency domain using FE-BE coupling. The total soil-pile interaction system is divided into two parts so called far field and near field beam elements are used for modeling a pile and coupled with plain strain elements for soil modeling. Boundary element formulation using the multi-layered dynamic fundamental solution is adopted to the far field and coupled with near field modeled by finite elements. In order to verify the proposed soil-pile interaction analysis method the dynamic responses of a pile on multi-layered dynamic fundamental solution is adopted to the far field and coupled with near field modeled by finite elements. In order to verify the proposed soil-pile interaction analysis method the dynamic responses of a pile on multi-layered half-planes are performed and compared with experiment results. Through this developed method the dynamic response analysis of a pile buried in multi-layered half planes can be calculated effectively in frequency domain.

• Proceedings of the Korean Geotechical Society Conference
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• 2003.03a
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• pp.805-812
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• 2003

The purpose of this study is to evaluate the behavior of a reinforced earth wall by modeling the properties of the interface between soil and reinforced elements as well as the non-linear stress-strain characteristics of soil. The effect of lateral earth pressures induced during construction is also included in the analyses. The interface element used to evaluate the relative movement of the interface between soil/reinforcement and soil/wall- facing has a zero thickness and essentially consists of normal and shear springs. The behavior of soil element is calculated based on the hyperbolic model. The computer program SSCOMPPC which includes the interface element, hyperbolic model and bi-linear model is applied in this study. From the analyses, it is showed that the locus of maximum tension were closed to the hi-linear failure line of theoretical analyses. The lateral displacement of SSCOMPPC is larger than that of the FLAC which adopts the elastic model. This means the analysis which is adopted the hyperbolic model and interface element induced more larger displacement.

• Proceedings of the KSR Conference
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• 2011.05a
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• pp.1214-1221
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• 2011

It is an well-known fact that dynamic properties should be considered in design and maintenance of civil structures undergoing dynamic force such as rail track. For designing of the rail tack structures, dynamic properties of track bed soil such as shear modulus (G) and damping coefficients(D) obtained in small to medium range of shear strain must be known. In general, small size sample of D=5 cm and H=10cm has been used mostly for test convenience. However, ratio of largest particle diameter of the soil to sample diameter is very important and affects to the values of dynamic soil properties in track bed. In this study, an RC/TS test apparatus was built and was run for testing a medium size soil sample that can handle with compacted soil sample up to 10 cm diameter and 20 cm height.

• Proceedings of the Korean Geotechical Society Conference
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• 1999.10a
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• pp.465-472
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• 1999

A small scale model reinforced soil wall was constructed in a laboratory to investigate role of the wall facing and the effect of construction sequence on the wall. A panel type facing system and a block facing system are introduced for test. These two different types of facing adapt different construction procedure. The model wall is built with geogrid reinforcement, sand, and the facings on rigid surface. The model wall is instrumented with earth pressure gauges, LVDTs, and strain gauges. It is found in this study that the reinforced soil wall system built with geogrids and panel type facing system be the safest reinforced soil wall ever compared to the block type facing. Thus, it is recommended that study for the wall system be necessary for further wide usage in the future.

• KSBB Journal
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• v.4 no.1
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• pp.8-10
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• 1989

Mutagenic characteristics deactivation of 7, 12-dimethylbenz(a)anthraracene was studied in a nonacclimated sandy loam soil at low and neutral pH soil conditions. Soil extracts containing transformation products were separated into three fractions based on HPLC retention time(polarity). Highly polar transformation products of 7, 12-dimethylbenz(a)anthracene demonstrated a negative mutagenic response with the Ames mutagenicity assay, strain TA-100, for both low and neutral pH soils. Moderate and low polar fractions, however, induced mutagenicity for both soil samples with mutagenic ratios similar to those of the parent compound.