• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2003.05a
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• pp.229-230
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• 2003

Shortnecked clam is a commercially important mollusks species, which is distributed all over the Yellow Sea. Consequent of the rapid increase in seed production, there is a need to understand the genetic composition of wild shortnecked clam populations in order to evaluate exactly the latent genetic effects induced by seed production operations. Many genetic and molecular researches were made because RAPD-PCR is a simple and rapid method for determining genetic diversity and similarity in various organisms with the advantage that no prior knowledge of the genome under research is needed (Fischer et at., 2000). (omitted)

• Korean Journal of Fisheries and Aquatic Sciences
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• v.34 no.3
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• pp.179-183
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• 2001

Shortnecked clam, Ruditapes philippinarum, is one of the very important shellfish produced in south-western coast of Korea. But it's ready to be polluted and have sand in flesh because it mainly inhabit in silt at the inside of coastal area. This study was carried out to obtain informations about the elimination of sand in shortnecked clam harvested from western coast of Korea. During rearing shortnecked clams in water tank, the elimination rates of sand from them at 6, 13, 23, $28^{\circ}C$ were 59.0, 88.2, 97.9, $96.1^{\circ}C$ after 48 hours, respectively. The sand was eliminated above $95^{\circ}C$ from the shellfish at 32,9 to $40\%_{\circ}$ of salinity after 48 hours. But the sand elimination from them was incomplete and inconsistent at 10 to 20 of salinity. The sand was eliminated rapidly at pH 1.9 to 9.0 however, its elimination was not effective at neutral or acidity range, It was found that the sand elimination was most effective at $23^{\circ}C, 35\%_{\circ}$ salinty and pH 9.0. Reasonable flow rate for sand eliminate in shortnecked clam was above 150 L/min./shellfish $m^3$ under both 3,000 and 4,000 L/shellfish $m^3$, and above 100 L/min,/shellfish $m^3$ under both 6,000 and 8,000 L/shellfish $m^3$ in water tank.

• Journal of Aquaculture
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• v.17 no.1
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• pp.12-23
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• 2004

Genomic DNAs were extracted from the muscle of twenty-two specimens of two shortnecked clam, Ruditapes phifippinarum populations collected in Anmyeondo and Seocheon. Genetic differences within and between populations were analysed by random amplified polymorphic DNAs-polymerase chain reaction (RAPD-PCR) using twenty arbitrary decamer primers. Out of 20 primers, 6 generated a total of 1,111 major and minor RAPD bands from individuals of two sites, producing approximately 4.2 average polymorphic bands per primer in individuals from Anmyeondo and ranging in size from less than 50 to larger than 1,500 base pairs (bp). The electrophoretic analysis of RAPD products amplified showed moderate levels of similarity among the different individuals in Seo-cheon population. The average bandsharing values (BS value) of the samples within population from Anmyeondo ranged from 0.155 to 0.684, whereas it was 0.143∼0.782 within population from Seocheon. The average BS value between individuals No. 13 and No. 14 from Seocheon was 0.782 which was higher than that of those from Anmyeondo. The single linkage dendrogram resulted from three primers (OPA-08, -09 and -20), indicating six genetic groupings composed of group 1 (No.4, 8 and 10), group 2 (No. 18), group 3 (No.2, 5 and 7), group 4 (No. 1, 3, 6, 9, 11, 12, 13, 14, 15 and 17), group 5 (16, 19 and 20) and group 6 (No. 21 and 22). In the Seocheon population, the individual No. 18 clustered distinctly from the others of this population. The observed genetic distance between the two populations from Anmyeondo and Seocheon was more than 0.209 (0.247 and 0.275). The shortest genetic distance (0.094) displaying significant molecular differences was between individuals No. 13 and No. 14. Especially, the genetic distance between individuals No. 22 and the remnants among individuals in two geographical populations was highest (0.275). This result illustrated that individual No.22 is distinct from other individuals within two shortnecked populations. The different geographical features of two sites may have caused the genetic diversity in two shortnecked clam populations.

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2002.05a
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• pp.281-282
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• 2002

Out of 20 primers, 6 generated a total of 1,111 major and minor RAPD bands, producing approximately 4.2 average polymorphic bands per primer in shortnecked clam (Ruditapes philippinarum) population from Anmyeondo. The Bandsharing value altered from 0.15 to 0.74, with the average f 0.51, as calculated by bandsharing analysis. The RAPD profiles obtained with DNAs of two populations from Anmyeondo and Seocheon, respectively, were considerably different (0.20 and 0.51, respectively). The varying degrees of difference among populations amy also be of relevance to the restricted hybridization of wild bivalve. Besides gene mapping and breeding applications, PCR-RAPD systems could be very useful for the rapid certification and quality control of seed production and for every projects based on PCR amplification of specific bivalve DNA fragments.

• Proceedings of the Korean Aquaculture Society Conference
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• 2002.08a
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• pp.172-174
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• 2002

Out of 20 primers, 6 generated a total of 1,11 major and minor RAPD bands, producing approximately 4.2 average polymorphic bands pe primer in shortnecked clam (Ruditapes philippinarum) population from Anmyeondo. The bandsharing value altered form 0.15 to 0.74, with the average of 0.5, as calculated by bandsharing analysis. The RAPD profiles obtained with DNAs of two populations from Anmyeondo and Seocheon, respectively, were considerably different (0.20 and 0.51, respectively). The varying degrees of difference among populations may also be of relevance to the retricted hybridization of wild bivalve. Besides gene mapping and breeding applications, PCR-RAPD system could be very useful for the rapid certification and quality control of seed production and for every projects based on PCR amplification of specific bivalve DNA fragments.

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 1998.06a
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• pp.167.1-168
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• 1998

• Fisheries and Aquatic Sciences
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• v.2 no.1
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• pp.98-104
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• 1999

The characteristics of the populations of shortnecked clam (Ruditapes philipinarum) originated from three different seed-production sites, Hadong, Kochang and Ulsan along the coast of Korea, were analysed by the morphological differences and the random amplified polymorphic DNA (RAPD) profiles. The morphology of the shell and survival rate for each population were also investigated 13-months after transplantation to a farming site in Shinsung. The morphology of the populations from Hadong and Kochang showed significant differences (P<0.05), but one year after transplantation to Shinsung, the morphology of these three populations was no longer significantly different (P>0.05). The template DNA for RAPD was efficiently extracted from the digestive diverticula of the clams. Up to 13 of amplified fragments were detected using arbitrary primers. Within the species of R. philipinarum, the genetic similarities ranged from 0.196 to 0.259. The populations from Hadong and Ulsan showed the highest similarity. The survival rates of the populations from Hadong $(69.4\%)$ and Ulsan $(63.8\%)$ were higher than that from Kochang $(41.7\%)$ 13-months after transplantation. From the RAPD analysis, it could be used as one of the primary criterion in determining which shellfish populations among various seed-production sites tend to be genetically similar and more adaptable and transplantable to a farming site.

• The Korean Journal of Malacology
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• v.26 no.3
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• pp.227-234
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• 2010

A comparative analysis of size and age structures of coastal subfossil shell assemblages of the shortnecked clam Ruditapes philippinarum from open and protected bays of Cheju Island (Korea) was carried out. On the whole, taking into account the damage of small fragile shells, size and age structures of the shell assemblages corresponded to the classical curve of bivalve population distribution when its mortality diminishes with age increase up to a certain threshold. It was found that shell samples from open bays of the western, southern and eastern coasts included shells of smaller and younger individuals (L ${\leq}$ 40 mm, ${\leq}$ 4 years) than samples from the eastern protected bay (L ${\leq}$ 54.5 mm, ${\leq}$ 6 years). Evidently, strong wave activity was the reason for a short life-span of the clams from the open areas. Growth was investigated retrospectively by annual growth rings on the shells. Growth rates of the clams from the various coasts of Cheju Island differed. However, growth rates of the clams from different biotopes at the same (eastern) side of the Island were similar. Shell height/length and width/length ratios statistically significantly increased with the clam age increase. Most likely, the reason for such shell shape alteration is that more conglobated individuals more survive being more energy-optimal than oblong specimens.

• Journal of Aquaculture
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• v.6 no.3
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• pp.133-146
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• 1993

Monthly variation of fatness index of the shortnecked clam was investigated at Moonhangri in Namhaedo of the southern coast of Korea from April 1991 to March 1992. The standing crops of umbo stage larvae and spats of this bivalve were also investigated. The results are as follows: The ranges of a monthly average water temperature and salinity were $6.9\~23.5^{\circ}C$ and $29.6\~33.1%o$ during the investigation period. Fatness index of the shortnecked clam decreased suddenly from June to September, which seemed to be spawning season. The umbo stage larvae of the clam were observed from May to November. The standing crops of the larvae were $883\;inds./m^3$ in August and$68\;inds./m^3$ in November. The observed number per ~ of the spats varied with the month and the different exposure time zones. The highest density $(1,508\;inds./m^3)$ was observed 1 hour exposure zone in August, and the lowest one $(28 inds./m^3)$ at 1 hour exposure station in April. Even the observed number of the spats below 4 mm in shell length were high in 1 and 3 hour exposure zones, the spats above 4 mm in shell length were observed mainly at 3 hour exposure zone.

• The Korean Journal of Malacology
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• v.23 no.1
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• pp.25-30
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• 2007

In order to estimate the ecological parameters of the population, short-necked clams, Ruditapes philippinarum, were collected from Jindu coast at Hansan Island, from April to December in 2005. The growth of the clam was estimated by von Bertalanffy growth model and each parameters were obtained from a nonlinear regression as $L_{\infty}\;=\;48.8\;mm$, k = 0.28 and $t_0\;=\;-0.88\;(R^2\;=\;0.994)$. Instantaneous coefficient of total mortality (Z) and fishing mortality (F) was calculated to be 0.8614/yr. and 0.6122/yr, respectively. The age at the first capture was estimated to be 2.88 year. Using the present parameter for clam fishing, the yield-per recruit (Y/R) was estimated to be 3.44g. Although the maximum Y/R was obtained under the parameters ($t_c\;=\;3.48\;yr$. and F = 0.9295/yr), it is favorable to maintain the current fishing effort considering the annual fluctuation of the parameters.