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Non-Synteny Regions in the Human Genome

  • Lee, Ki-Chan;Kim, Sang-Soo
    • Genomics & Informatics
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    • v.8 no.2
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    • pp.86-89
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    • 2010
  • Closely related species share large genomic segments called syntenic regions, where the genomic elements such as genes are arranged co-linearly among the species. While synteny is an important criteria in establishing orthologous regions between species, non-syntenic regions may display species-specific features. As the first step in cataloging human- or primate- specific genomic elements, we surveyed human genomic regions that are not syntenic with any other non-primate mammalian genomes sequenced so far. Based on the data compiled in Ensembl databases, we were able to identify 10 such regions located in eight different human chromosomes. Interestingly, most of these highly human- or primate- specific loci are concentrated in subtelomeric or pericentromeric regions. It has been reported that subtelomeric regions in human chromosomes are highly plastic and filled with recently shuffled genomic elements. Pericentromeric regions also show a great deal of segmental duplications. Such genomic rearrangements may have caused these large human- or primate- specific genome segments.

Classification of Livestock Raising Area and Spatial Mobility (가축사육의 지역분류와 공간이동에 관한 연구)

  • 김재환;박치호;강희설;곽정훈;최동윤;최희철
    • Journal of Animal Environmental Science
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    • v.7 no.1
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    • pp.45-56
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    • 2001
  • The following statistics are the results of a survey that analyzed the classification of livestock area and spatial mobility based upon the number of livestock and an area of 151 towns and cities from 1975 to 1995. 1. As a results of analysis about the degree of location concentration using C.V., Korean native cattles (HanWoo) and swines are becoming more centralized while dairies and chickens are becoming decentralized. 2. 49 regions, that is 32.5%, were classified as growing regions, 30 regions (19.9%) were stagnant regions and 72 regions (47.7%) were withering regions. The classification was based upon the calculation according to the numbers of converted grown animals and growth index. Kyonggi-do and Chungchongnam-do, specifically, took up 26.6% and 24.5% of the developing regions which shows that these two regions are the dominant regions for livestock. 3. Kyongsangbuk-do and Chungchongnam-do play significant roles for overall livestock, and Chollanam-do is considering a transition from swines to Korean native cattles and Kyongsangbuk-do is shifting from Korean native cattles to swines.

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Flame Detection using Region Expansions and On-line Variances in Infrared image (적외선 영상에서 영역확장과 온라인 분산을 이용한 화염 검출)

  • Kim, Dong-Keun
    • Journal of Korea Multimedia Society
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    • v.12 no.11
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    • pp.1547-1556
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    • 2009
  • In this paper, we propose a flame detection method using region expansions and on-line variances in outdoor infrared video sequences. To segment flame candidates' regions in infrared images, we first, extract initial regions by high threshold values in infrared images and then the segmented regions are expanded to their neighbors with similar high intensity values. The segmented regions could be non-flame areas like bare-grounds and buildings. Therefore, to detect flame regions in the segmented regions, the segmented regions which have high intensity values in infrared image, are tracked using bounding regions in frame sequences. Variances in the tracked regions are calculated effectively by on-line updates to measure intensity variations on the tracked regions. Experiments show that the proposed method, which is based on region expansions and the average of on-line variances in the regions, is efficient to detect flames in infrared image.

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Seismic Design of Structures in Low Seismicity Regions

  • Lee, Dong-Guen;Cho, So-Hoon;Ko, Hyun
    • Journal of the Earthquake Engineering Society of Korea
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    • v.11 no.4
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    • pp.53-63
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    • 2007
  • Seismic design codes are developed mainly based on the observation of the behavior of structures in the high seismicity regions where structures may experience significant amount of inelastic deformations and major earthquakes may result in structural damages in a vast area. Therefore, seismic loads are reduced in current design codes for building structures using response modification factors which depend on the ductility capacity and overstrength of a structural system. However, structures in low seismicity regions, subjected to a minor earthquake, will behave almost elastically because of the larger overstrength of structures in low seismicity regions such as Korea. Structures in low seismicity regions may have longer periods since they are designed to smaller seismic loads and main target of design will be minor or moderate earthquakes occurring nearby. Ground accelerations recorded at stations near the epicenter may have somewhat different response spectra from those of distant station records. Therefore, it is necessary to verify if the seismic design methods based on high seismicity would he applicable to low seismicity regions. In this study, the adequacy of design spectra, period estimation and response modification factors are discussed for the seismic design in low seismicity regions. The response modification factors are verified based on the ductility and overstrength of building structures estimated from the farce-displacement relationship. For the same response modification factor, the ductility demand in low seismicity regions may be smaller than that of high seismicity regions because the overstrength of structures may be larger in low seismicity regions. The ductility demands in example structures designed to UBC97 for high, moderate and low seismicity regions were compared. Demands of plastic rotation in connections were much lower in low seismicity regions compared to those of high seismicity regions when the structures are designed with the same response modification factor. Therefore, in low seismicity regions, it would be not required to use connection details with large ductility capacity even for structures designed with a large response modification factor.

Immunohistochemical Study of the Endocrine Cells in the Pancreas of the Korean Aucha Perch, Serranidae (Coreoperca herzi) (Serranidae (Coreoperca herzi) 췌장 내분비세포에 대한 면역조직화학적 연구)

  • Lee, Jae-hyun;Ku, Sae-kwang;Lee, Hyeung-sik;Ham, Tae-su
    • Korean Journal of Veterinary Research
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    • v.43 no.3
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    • pp.339-347
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    • 2003
  • The regional distribution and relative frequency of some endocrine cells in the pancreas of the Korean aucha perch, Coreoperca herzi Herzenstein belonging to the family Serranidae in order Perciformis, were observed using specific mammalian antisera against serotonin, insulin, glucagon, somatostatin and human pancreatic polypeptide (hPP) by peroxidase antiperoxidase (PAP) method. The pancreas was divided into four portions (principal and secondary islets, exocrine and pancreatic duct regions). In addition, the pancreatic islet regions were further subdivided into three regions (central, mantle and peripheral regions). Spherical to spindle or occasionally round to oval immunoreactive (IR) cells were demonstrated in the pancreatic islets and exoccrine portions, but no cells were detected in the pancreatic duct portions. In the principal islets, serotonin-IR cells were not detected but most of insulin-IR cells were located in the central regions and they were also demonstrated in the mantle and peripheral regions in moderate and rare frequencies, respectively. Glucagon- and hPP-IR cells were mainly situated in the mantle regions but the cells were also demonstrated in the peripheral regions in relatively lower frequency. Somatostatin-IR cells were evenly distributed in the central and mantle regions in a few frequency and cells were also demonstrated in the peripheral regions in rare frequency. Cell clusters were consisted of hPP-IR cells that were situated in the peripheral to mantle regions. In the secondary islet portions, serotonin-IR cells were randomly distributed throughout the whole pancreatic islet regions but lower frequency was detected in the peripheral regions compared to that in central and mantle regions where cells were detected in a few frequency, respectively. Insulin-IR cells were restricted to the central regions in numerous frequency and glucagon-IR cells were evenly distributed in the mantle and peripheral regions in moderate frequencies, respectively. Somatostatin-IR cells were observed in the central and mantle regions in moderate and a few frequencies, respectively. In addition, hPP-IR cells showed similar distributional patterns to those of glucagon-IR cells except cells were also located in the central regions in rare frequency. In the exocrine portions, only glucagon- and hPP-IR cells were demonstrated in rare and a few frequencies, respectively. In conclusion, the regional distribution and relative frequency of pancreatic endocrine cells of the Korean aucha perch showed general patterns, which were observed in other teleost. However, some species-dependent different distributional patterns and/or relative frequencies were also demonstrated especially to serotonin-IR cells. In pancreas of the Korean aucha perch, insulin-IR cells were the most predominant cell type followed by glucagon-, somatostatin-, hPP- and serotonin-IR cells.

Division of Small Unit Based on a Nationwide Disaster Vulnerability Map (전국단위 재해위험도에 기초한 급경사지 재해의 단위권역 구분)

  • Kim, Sung-Wook;Choi, Eun-Kyeong;Park, Dug-Keun;Oh, Jeong-Rim
    • Proceedings of the Korean Geotechical Society Conference
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    • 2010.03a
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    • pp.927-932
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    • 2010
  • This study made a nationwide metropolitan region map on the basis of disaster vulnerability and administrative boundary, and based on it, it divided small-sized regions and constructed disaster history of each region. For the disaster vulnerability, the study wrote slope, aspect, curvature, wetness index, and drainage density, compared and analyzed regions with disaster and geomorphic elements to distinct the factor with high correlations, and based on it, it divided small-sized regions for forecasting and warning system of middle regions(Gangwon province, Chungchung province, and Jeolla province). Through the method, Gangwon region were divided into 4 small-sized regions, Chungchung into 5 small-sized regions, and Jeolla into 6 small-sized regions.

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An Ultraviolet Study of Star-Forming Regions in M33

  • Kang, Yongbeom;Rey, Soo-Chang;Bianchi, Luciana
    • The Bulletin of The Korean Astronomical Society
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    • v.41 no.2
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    • pp.62.3-63
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    • 2016
  • We studied the young stellar populations of star-forming (SF) regions in M33 based on the Galaxy Evolution Explorer (GALEX) ultraviolet (UV) imaging data. The SF regions are defined from far-UV data with various thresholds. We examined the reddening and spatial distribution of hot massive stars within SF regions from Hubble Space Telescope multi-band survey and Local Group Galaxy Survey (LGGS) data. The H-alpha sources from the LGGS are used for comparing with the spatial distribution of SF regions. The GALEX UV flux measurements of SF regions are used to derive their ages and masses. We also estimated the size and density of SF regions. The younger and compact SF regions are often arranged within older and sparser SF complexes. The results allow us to understand the hierarchical star formation and recent evolution of M33.

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UNDER-DENSITY REGIONS AND THE PRIMORDIAL DENSITY FIELD

  • KIM MINSUN;PARK CHANGBOM
    • Journal of The Korean Astronomical Society
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    • v.31 no.2
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    • pp.109-115
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    • 1998
  • We show that the low density regions of the matter distribution preserve the properties of the primordial density field better than the high density regions. We have performed a cosmological N-body simulation of large-scale structure formation in the standard CDM cosmology, and studied the evolution of statistics of under-density and over-density regions separately. The rank-order of the under-density regions is closer to the original one compared to that of the over-density regions. The under-density peaks (or voids) has moved less than over-density peaks (or dense clusters of galaxies) from their initial positions. Therefore, the under-density regions are more useful than the over-density regions in the study of the statistical property of the primordial density field.

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Automatic Drawing Input by Segmentation of Text Region and Recognltion of Geometric Drawing Element (문자영역의 분리와 기하학적 도면요소의 인식에 의한 도면 자동입력)

  • 배창석;민병우
    • Journal of the Korean Institute of Telematics and Electronics B
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    • v.31B no.6
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    • pp.91-103
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    • 1994
  • As CAD systems are introduced in the filed of engineering design, the necessities for automatic drawing input are increased . In this paper, we propose a method for realizing automatic drawing input by separation of text regions and graphic regions, extraction of line vectors from graphic regions, and recognition of circular arcs and circles from line vectors. Sizes of isolated regions, on a drawing are used for separating text regions and graphic regions. Thinning and maximum allowable error method are used to extract line vectors. And geometric structures of line vectors are analyzed to recognize circular arcs and circles. By processing text regions and graphic regions separately, 30~40% of vector information can be reduced. Recognition of circular arcs and circles can increase the utilization of automatic drawing input function.

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Analysis of Saltwater Intrusion Effects into Coastal Aquifers in Korea considering Climate Change Effects (기후변화의 영향을 고려한 한반도 해안지역 대수층의 해수침투 영향 분석)

  • Yang, Jeong-Seok;Nam, Jae-Joon;Park, In-Bo;Kim, Sangdan
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.31 no.1B
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    • pp.71-85
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    • 2011
  • Saltwater intrusion effects of coastal aquifers in Korea peninsula were analyzed through trend analysis with groundwater level, seawater level, seawater temperature, and electrical resistivity(EC) data sets. Groundwater level and EC data sets from 27 coastal regions were collected and analyzed. Groundwater level was stable for all the regions however EC data showed stable or changing trends (9 increasing, 10 stable, and 8 decreasing regions). Seawater temperature was collected and analyzed for 14 regions and they are increasing for most regions (12 increasing and 2 stable regions). Seawater level was also collected and analyzed for 24 regions and is rising for most regions (18 rising, 3 stable, and 3 falling regions). Especially, west cost regions have stronger increasing tendencies of seawater level, seawater temperature, and EC than eastern and southern coastal regions. Therefore the saltwater intrusion problem can be serious for west cost regions in Korea peninsula and it is necessary to establish a plan to minimize the damages from saltwater intrusion.