• Title/Summary/Keyword: origin identification

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Method of DNA Extraction from Pinus rigida Wood Pretreated with Sandpaper

  • Lee, Jamin;Kim, Tae-Jong
    • Journal of the Korean Wood Science and Technology
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    • v.46 no.4
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    • pp.402-414
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    • 2018
  • Species identification of wood provides important information for archaeology, restoration of cultural assets, preventing illegal logging, and more. Wood species are usually identified based on their anatomical features with the use of a microscope. However, this method may not be able to distinguish between anatomically similar species or subspecies. To overcome this problem, wood species need to be identified at the molecular level using DNA sequencing. However, unlike living plant cells, wood is difficult to pulverize using a mortar, and DNA extraction from dried wood is challenging. To solve these problems, we propose a pretreatment method in which wood is pulverized using 60-grit sandpaper and hydrated with water for 2 days. Using this method, we were able to stably amplify the rpoB gene from the extracted DNA of Pinus rigida. In addition, sequence analysis of the rpoB gene revealed six single nucleotide polymorphisms (SNPs), which classified the rpoB sequences in the genus Pinus into five groups. Our data indicate that although these SNPs were not suitable for species identification, they can potentially be used to determine the origin of different wood subspecies or individual samples of wood.

Comparison of Mineral Contents and Antioxidant Activities of Domestic and Chinese Wolfiporia extensa for Origin Identification (국내산과 중국산 복령의 원산지 구별을 위한 성분 분석 및 항산화 활성)

  • Park, Na-Hye;Jo, Woo-Sik;Park, Seung-Chun
    • Journal of Mushroom
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    • v.14 no.4
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    • pp.232-236
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    • 2016
  • This study aimed to discriminate the geographical origins of domestic and chinese Wolfiporia extensa. They were subjected to oxygen (45.32 to 48.07%), carbon (38.09 to 40.12%), hydrogen (6.05 to 6.78%), and nitrogen (0.16 to 0.23%). Antioxidant activity was examined by DPPH free radical scavenging activity. According to the results of the experiment, no significant differences were found between domestic ($IC_{50}$, 7.25 mg/ml) and Chinese ($IC_{50}$, 8.35 mg/ml) W. extensa. However, as determined by the inorganic mineral contents were significantly different between domestic and Chinese W. extensa. The amount of potassium in domestic and Chinese W. extensa was and $33.14{\pm}17.27%$, $47.60{\pm}8.78%$, respectively. The results of this study suggested that the analysis of inorganic components by ED-XRF should be useful for origin identification of W. extensa.

Identification of Staphylococcus hyicus subsp. hyicus of swine, poultry and bovine origin with the API STAPH system (API STAPH system을 이용한 돼지, 닭 및 소유래 Staphylococcus hyicus subsp. hyicus의 동정)

  • Park, Cheong-kyu
    • Korean Journal of Veterinary Research
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    • v.36 no.3
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    • pp.657-663
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    • 1996
  • The API STAPH system was compared with conventional methods for identification of 214 strains of Staphylococcus hyicus subsp. hyicus isolated from cases of exudative epidermitis in piglets, skin of healthy pigs, skin of healthy chickens and bovine intramammary infections, and biochemical characteristics among the swine, avian and bovine strains were also compared. All of the swine and bovine strains produced acid within 24 hours from fructose, lactose and trehalose by conventional methods, but some of the avian strains showed a delayed positive reaction in these carbohydrates. These delayed positive strains in conventional methods gave usually negative results for them in the API STAPH system. With the API STAPH system, eighteen different profile numbers were encountered in 214 strains of swine, avian and bovine origin. The swine and bovine strains, respectively, were distributed among 4 profiles, while the avian strains were distributed among 17 profiles. The profile number observed most frequently in the strains of each animal species was uniformly 6 516 153. By conventional methods, approximately 96% of the swine strains were positive for ${\beta}$-glucuronidase, but not in any strains from chickens and cattle. For hyaluronidase production determined by degradation of sodium hyaluronidate in a solid culture medium, all the swine and bovine strains were positive, but only 37.5% of the avian strains were positive for it. From these findings, there were differences in the production of extracellular active substances between swine strains of Staphylococcus hyicus subsp. hyicus and those isolated from chickens and cattle.

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A brief review on Oyster shells origin and sedimentary evolution for the formation of limestone

  • Ramakrishna, Chilakala;Thriveni, Thenepalli;Whan, Ahn Ji
    • Journal of Energy Engineering
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    • v.27 no.3
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    • pp.48-56
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    • 2018
  • The shell waste biomineralization process has known a tremendous metamorphosis and also the nanostructure with the identification of matrix proteins in oyster shells. However, proteins are represented in minor shell components and they are the major macromolecules that control biocrystal synthesis. Aragonite and calcite were derived from molluscan shells and evaluated the source of carbonate minerals and it helps for the formation of limestone. The oyster shell wastes are large and massive. The paleoecological study of oyster beds has discovered a near-shore and thin Upper Rudeis formation with storm influence during the accumulation of oysters with highly altered by disarticulation, bioerosion, and encrustation. It is possible even in the Paleozoic mollusks provided sufficient carbonate entirely to the source of microcrystalline of limestone. The present review is to discuss paleoecologically a number of oyster shell beds accumulated and sediment to form the different types of limestone during the Middle Miocene time.

Isolation and Identification of Weissella kimchii from Green Onion by Cell Protein Pattern Analysis

  • Kim, Tae-Woon;Lee, Ji-Yeon;Song, Hee-Sung;Park, Jong-Hyun;Ji, Geun-Eog;Kim, Hae-Yeong
    • Journal of Microbiology and Biotechnology
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    • v.14 no.1
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    • pp.105-109
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    • 2004
  • This study was conducted to investigate the potential origin of Weissella species, which were found in ingredients of kimchi, such as salted Chinese cabbage, radish, green onion, red pepper powder, pickled shrimps, garlic, and ginger. Ten strains of Weissella species (Weissella thailandensis, W. kimchii, W. koreensis, W. minor, W. halotolerans, W. hellenica, W. kandleri, W. confusa, W. viridescens, and W. paramesenteroides) and lactic acid bacteria isolated from ingredients of kimchi were analyzed by SDS-PAGE of whole-cell proteins. Several strains with patterns identical to those of Weissella kimchii were isolated from green onion. On the basis of biochemical characteristics and 16S rDNA sequence comparisons, these strains were identified as Weissella kimchii, suggesting green onion as a major origin of Weissella kimchii found in kimchi.

The chemical composition and shape of inclusion of amethyst (자수정 내포물의 형상과 화학조성에 관한 연구)

  • Yoon, Si-Nae;Song, Young-Jun;Yon, Seog-Joo
    • Journal of the Korean Crystal Growth and Crystal Technology
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    • v.20 no.5
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    • pp.207-215
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    • 2010
  • This study was carried out for the purpose of obtaining the basic data for identifying the origin of amethyst. For this, the three dimensional shapes of inclusions contained in various amethyst were observed with Stereo Zoom microscope. The shape and chemical composition of cross section of solid inclusion and the chemical composition of evaporite were investigated by SEM-EDS. The evaporite is made from evaporating of liquid inclusion which is flowed out of amethyst sample by decompressing. Lastly, The trace mineral composition of amethyst was investigated by ICP-AES after digesting the amethyst sample with HF-$H_2SO_4$ solution.

The Origin of Shanghanlun Six Meridians - The Theory of Meridians is at the core - (상한육경(傷寒六經)의 기원(起源)에 대(對)한 연구(硏究) - 경맥학설(經脈學說)과의 비교(比較)를 중심(中心)으로 -)

  • Park, Yung-Hwan
    • The Journal of Korean Medical History
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    • v.26 no.1
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    • pp.27-39
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    • 2013
  • The Theory of Meridian can be classified into early form of pre- and present form of after-. The representative early form of meridian is Eleven Meridians in Mawangdui scrolls(馬王堆帛書) which use Six Qi Diagnosis(六氣辨證). because it did not adopt Visceral Pattern Identification(臟腑辨證). The present form of meridian is Twelve Meridians of . It has developed to investigate relations between Visceral and disease with Five Phase Theory. Analyzing the name of the Six Meridians in the Shanghanlun(傷寒論)On Cold Damage, there are no hands, feet and visceral signs. and it is almost identical to Eleven Meridians in Mawangdui scrolls. According to , Eleven Meridians use only Six Foot Meridians(足六經) to classify diseases. This fact was applied identically to the Six Meridians in the Shanghanlun. Therefore many doctors, especially Hanzhihe(韓祗和) and Zhangzhicong(張志聰) mentioned that "I have never seen a book on Shanghanlun discuss about Hand Meridians(手經)."

Archeological Consideration of DNA Typing (유전자 분석의 고고학적 고찰)

  • Lee, Kyu-Sik;Seo, Min-Seok;Chung, Yong-Jae
    • Korean Journal of Heritage: History & Science
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    • v.35
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    • pp.120-137
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    • 2002
  • It has not been a long time since we recognize that a word 'DNA' is not unfamiliar with us. Development of biology give us so much of benefits of civilization and so we call the 21th century as 'biological period'. It has not been a long time that archeology made contact with biology. With biological development, DNA typing analysis has been accomplished extensively since 1990's. We know through mitochondrial DNA base sequencing analysis that the Neanderthal man is not the origin of the human race and ancient human race set out from Africa. Biological science technology, which is polymerase chain reaction(PCR) or electrophoresis etc., made these results possible. A contact between biology, especially genetics, and archeology is getting accomplished through these current. If genetics keep in contact with archeological foundation, we know not only about ancient populations in the Korean Peninsula, but also origin of human race. This field is so-called 'DNA Archeology'. This field is of help to person identification and children discrimination as like a forensic science. We make every effort for great possibilities from co-ownership of these two fields and these fields needs to convert a recognition, especially.

Genetic Identification Monitoring of Cobitidae Distribution in Korea (국내에서 유통되는 미꾸리과(Cobitidae) 어종의 분자동정 모니터링)

  • Kim, Hyunsuk;Shin, Jiyoung;Yang, Junho;Cha, Eunji;Yang, Ji-young
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.55 no.5
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    • pp.742-750
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    • 2022
  • This study aimed to monitor the distribution of Cobitidae in Korea by the identification of species using genetic analysis. Based on the genetic analysis, Cobitidae species in four of five domestic fish farms consisted of only Chinese muddy loach Misgurnus mizolepis, but muddy loach Misgurnus anguillicaudatus was also present it in one fish farm. In the case of imported Cobitidae species, in addition to Chinese muddy loach and muddy loach, the harmful species Paramisgurnus dabryanus, was also present. Chinese muddy loach accounted for 20%, 67%, and 60% of the S6, S7, and S8 samples, respectively. An analysis of the total length, body length, and weight showed that domestic Chinese muddy loach showed higher values than imported muddy loach, and imported Chinese muddy loach showed similar values to P. dabryanus. There were no significant differences in the country of origin of the three species. Thus, the mitochondrial cytochrome c oxidase subunit I gene sequence was analyzed and compared the verification of species identification. The three species of Cobitidae were genetically divided into three groups and determined to have genetic differences. These results indicate that it is necessary to reduce the heterogeneous mixing rate through discriminating species by genetic analysis.

Current status and prospects of the authentication of Angelica species (Angelica 속 식물의 종판별을 위한 연구현황 및 전망)

  • Gil, Jinsu;Park, Sang ik;Lee, Yi;Kim, Ho Bang;Kim, Seong-Cheol;Kim, Ok-Tae;Cha, Seon-Woo;Jung, Chan Sik;Um, Yurry
    • Journal of Plant Biotechnology
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    • v.43 no.2
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    • pp.151-156
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    • 2016
  • Medicinal plants resources are becoming important assets since their usages have been expanded to the development of functional foods for human health, natural cosmetics, and pharmaceutical industries. However, names are different from each country and their phylogenetic origins are not clear. These lead consumers to be confused. In particular, when they are morphologically similar and distributed as dried roots, it is extremely difficult to differentiate their origins even by specialists. Recently, molecular markers have been extensively applied to identify the origin of many crops. In this review, we tried to overview the current research achievements for the development of suitable 'origin identification' regarding to the differentiation of Angelica species. Furthermore, more advanced techniques including amplification genome based marker analyses are also discussed for their practical applications in the authentication of particular medicinal plant in Angelica species.