• Title/Summary/Keyword: neural spike sorting

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Improved Algorithm for Fully-automated Neural Spike Sorting based on Projection Pursuit and Gaussian Mixture Model

  • Kim, Kyung-Hwan
    • International Journal of Control, Automation, and Systems
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    • v.4 no.6
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    • pp.705-713
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    • 2006
  • For the analysis of multiunit extracellular neural signals as multiple spike trains, neural spike sorting is essential. Existing algorithms for the spike sorting have been unsatisfactory when the signal-to-noise ratio(SNR) is low, especially for implementation of fully-automated systems. We present a novel method that shows satisfactory performance even under low SNR, and compare its performance with a recent method based on principal component analysis(PCA) and fuzzy c-means(FCM) clustering algorithm. Our system consists of a spike detector that shows high performance under low SNR, a feature extractor that utilizes projection pursuit based on negentropy maximization, and an unsupervised classifier based on Gaussian mixture model. It is shown that the proposed feature extractor gives better performance compared to the PCA, and the proposed combination of spike detector, feature extraction, and unsupervised classification yields much better performance than the PCA-FCM, in that the realization of fully-automated unsupervised spike sorting becomes more feasible.

Classification of Multi-Unit Neural Action Potential by Template Learning (학습 가능한 실시간 다단위 신경 신호의 분류에 관한 연구)

  • Kim, S.D.;Kim, K.H.;Kim, S.J.
    • Proceedings of the KOSOMBE Conference
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    • v.1997 no.11
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    • pp.99-102
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    • 1997
  • A neural spike sorting technique has been developed that also has the capability of template learning. A system of software has been written that first obtains the templates by learning, and then performs the sorting of the spikes into single units. The spike sorting can be done in real time. The template learning consists of spike detection based on the discrete Haar transform (DHT), feature extraction by clustering of spike amplitude and duration, classification based on rms error, and fabrication of templates. The developed algorithms can be implemented into real time systems using digital signal processors.

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Development of Multichannel Real Time Data Acquisition and Signal Processing System for Nervous System Analysis (다채널 실시간 신경신호 기록 및 신경계 분석을 위한 시스템의 개발)

  • 김상돌;김경환;김성준
    • Journal of Biomedical Engineering Research
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    • v.21 no.5
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    • pp.469-475
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    • 2000
  • 신경신호의 계측은 신경계의 연구에 필수적인 도구로 최근 반도체미세전극기술 등 수십, 수백개의 채널로부터 신경신호를 기록할 수 있는 방법들이 발달함에 따라 많은 수의 뉴런으로부터 신경 신호를 측정하여 컴퓨터로 그 신호를 처리할 수 있는 시스템의 필요성은 더욱 커지고 있다. 본 연구에서는 최대 16채널의 신경신호를 실시간에 측정하여 기록하고, 저장된 신호로부터 활동전위를 검출하며, 단일 뉴런들로부터의 신호를 분류하여 spike train의 형태로 저장한 뒤 여러 뉴런들간의 상관관계를 분석하기 위한 spike train 해석이 가능한 시스템을 개발하였다. 이 시스템은 보통사양의 PC이외에는 단지 신호획득보드만을 포함하여 다채널미세전극으로부터 뉴런의 신호를 측정, 증폭하여 호스트PC로 전송하고 저장하며 이로부터 활동전위를 검출하여 단일뉴런으로부터의 spike train으로 분류할 수 있다. 또한 저장된 spike train들로부터 신경회로망을 이루는 여러뉴런 들간의 관계를 분석하여 기능들이 시스템에 포함되어있다. 개발된 시스템을 사용하여 개구리 감각 신경의 신호를 실시간에 동시기록하여 활동전위을 검출하고 특징추출방법과 principal component analysis를 이용하여 분류한 뒤 spike train 해석을 수행하였다.

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Application of Tetrode Technology for Analysis of Changes in Neural Excitability of Medial Vestibular Nucleus by Acute Arterial Hypotension (급성저혈압에 의한 내측전정신경핵 신경세포의 흥분성 변화를 분석하기 위한 테트로드 기법의 적용)

  • Kim, Young;Koo, Ho;Park, Byung Rim;Moon, Se Jin;Yang, Seung-Bum;Kim, Min Sun
    • Research in Vestibular Science
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    • v.17 no.4
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    • pp.142-151
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    • 2018
  • Objectives: Excitability o medial vestibular nucleus (MVN) in the brainstem can be affected by changes in the arterial blood pressure. Several animal studies have demonstrated that acute hypotension results in the alteration of multiunit activities and expression of cFos protein in the MVN. In the field of extracellular electrophysiological recording, tetrode technology and spike sorting algorithms can easily identify single unit activity from multiunit activities in the brain. However, detailed properties of electrophysiological changes in single unit of the MVN during acute hypotension have been unknown. Methods: Therefore, we applied tetrode techniques and electrophysiological characterization methods to know the effect of acute hypotension on single unit activities of the MVN of rats. Results: Two or 3 types of unit could be classified according to the morphology of spikes and firing properties of neurons. Acute hypotension elicited 4 types of changes in spontaneous firing of single unit in the MVN. Most of these neurons showed excitatory responses for about within 1 minute after the induction of acute hypotension and then returned to the baseline activity 10 minutes after the injection of sodium nitroprusside. There was also gradual increase in spontaneous firing in some units. In contrast small proportion of units showed rapid reduction of firing rate just after acute hypotension. Conclusions: Therefore, application of tetrode technology and spike sorting algorithms is another method for the monitoring of electrical activity of vestibular nuclear during acute hypotension.

Recording and Analysis of Peripheral Nerve Activity Using Multi-Electrode Array (다채널 신경전극 어레이를 이용한 말초 신경신호의 측정 및 분석)

  • Chu, Jun-Uk
    • Journal of rehabilitation welfare engineering & assistive technology
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    • v.10 no.4
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    • pp.279-285
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    • 2016
  • Reliable recording and analysis of peripheral nerve activity is important to recognize the user's intention for controlling a neuro-prosthetic hand. In this paper, we present a peripheral nerve recording system that consisted of an intrafascicular multi-electrode array, an electrode insertion device, and a multi-channel neural amplifier. The 16 channel multi-electrode array was stably implanted into the sciatic nerve of the rat under anesthesia using the electrode insertion device. During passive movements and mechanical stimuli, muscle and cutaneous afferent signals were recorded with the multi-channel neural amplifier. Furthermore, we propose a spike sorting method to isolate individual neuronal unit. The muscle proprioceptive units were classified as muscle spindle afferents or Golgi tendon organ afferents, and the skin exteroceptive units were categorized as slow adapting afferents or fast adapting afferents. Experimental results showed that the proposed method could be applicable to record and analyze peripheral nerve activity in neuro-prosthetic systems.