• 제목/요약/키워드: mtDNA COI

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남극해에서 한국 옵서버에 의해 채집된 민태과(대구목) 어류 2종의 형태 및 분자동정 (Morphological and Molecular Identification of Two Macrourid Species (Gadiformes) Collected by the Korean Observer from the Southern Ocean)

  • 서민주;김진구;정상덕
    • 한국수산과학회지
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    • 제55권6호
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    • pp.967-972
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    • 2022
  • We investigated the molecular and morphological traits of 338 individual macrourids collected from the Southern Ocean (FAO area number, 88.1 and 88.3) between 2021 and 2022 by Korean bottom trawls. We first identified them as Macrourus caml and Macrourus whitsoni based on morphological traits, such as the number of pelvic fin rays (PF) and the rows of lower jaw teeth (LJT). However four individuals showed uncategorizable morphological characteristics such as PF and LJT numbers that overlapped between the two species. Subsequently, we obtained and analyzed 509 bp of the mtDNA COI sequences of 49 individuals, including the four unidentified individuals, and found only one single nucleotide polymorphism (SNP) that distinguished the two species. Finally, using our molecular identification key, we confirmed that each two individuals were misidentified as M. whitsoni and M. caml reversely. Our results suggest that the number of PF and LJT should be investigated together to accurately identify the two species.

한국 서해 보령에서 채집된 긴꼬리엄지도치(Eumicrotremus jindoensis)의 지역 확장 및 지리적 변이에 관한 새로운 발견 (New Finding on Range Expansion and Geographic Variation of Eumicrotremus jindoensis(Cyclopteridae) Collected from Boryeong in the Western Coast of Korea)

  • 송영선;김맹진;김진구
    • 한국어류학회지
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    • 제33권3호
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    • pp.184-190
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    • 2021
  • 우리나라 진도에서 채집된 도치과(Cyclopteridae)의 긴꼬리엄지도치(Eumicrotremus jindoensis)는 2017년에 신종 보고 이후 추가적으로 서해 보령에서 1개체(22.3 mm SL)가 연안개량안강망으로 채집되었다. 그러나, 본 개체는 모식표본보다 더 많은 척추골수(26 vs. 21~24), 긴 주둥이길이(17.4% vs. 8.1~9.1%), 긴 항문장(67.5% vs. 58.0~58.3%), 그리고 짧은 제2등지느러미 앞 길이(15.3% vs. 20.2~20.8%)를 가지는 점에서 약간의 형태적 차이를 나타냈다. 미토콘드리아 DNA COI 영역과 Cytb 영역의 염기서열을 비교했을 때, 본 개체는 모식표본과 유전적인 차이는 발견할 수 없었다. 따라서 이러한 형태적인 차이는 우리나라 진도와 보령 해역의 서로 다른 서식지 및 환경 조건에 따른 지리적 변이로 추정된다. 우리나라 도치과 어류 중 엄지도치(E. uenoi)는 우리나라 남해역(부산, 통영 및 제주도)에서만 발견되고 있으며, 동 속의 우릉성치(E. asperrimus), 골린어(E. pacificus) 그리고 도치(E. taranetzi)는 모두 동해역에서만 서식하기 때문에, 긴꼬리엄지도치만이 우리나라 서해의 중부 및 남부해역에서 발견되는 점에서 매우 흥미롭다.

Development of Species-Specific PCR Primers for the Rapid and Simultaneous Identification of the Six Species of Genus Takifugu

  • Dong, Chun Mae;Park, Yeon Jung;Noh, Jae Koo;Noh, Eun Soo;An, Cheul Min;Kang, Jung-Ha;Park, Jung Youn;Kim, Eun-Mi
    • 한국발생생물학회지:발생과생식
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    • 제23권4호
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    • pp.367-375
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    • 2019
  • Pufferfish (Takifugu spp.) are economically important edible marine fish. Mistakes in pufferfish classification can lead to poisoning; therefore, accurate species identification is critical. In this study, we used the mtDNA cytochrome c oxidase subunit I gene (COI) to design specific primers for six Takifugu species among the 21 domestic or imported pufferfish species legally sold for consumption in Korea. We rapidly and simultaneously identified these pufferfish species using a highly efficient, multiplex polymerase chain reaction (PCR) system with the six species-specific primers. The results showed that species-specific multiplex PCR (multiplex species-specific polymerase chain reaction; MSS-PCR) either specifically amplified PCR products of a unique size or failed. MSS-PCR yielded amplification fragment lengths of 897 bp for Takifugu pardalis, 822 bp for T. porphyreus, 667 bp for T. niphobles, 454 bp for T. poecilonotus, 366 bp for T. rubripes, and 230 bp for T. xanthpterus using the species-specific primers and a control primer (ca. 1,200 bp). We visualized the results using agarose gel electrophoresis to obtain accurate contrasts of the six Takifugu species. MSS-PCR analysis is easily performed and provides identification results within 6 h. This technique is a powerful tool for the discrimination of Takifugu species and will help prevent falsified labeling, protect consumer rights, and reduce the risk of pufferfish poisoning..

한국 제주도 남동부해역에서 첫 출현한 성대과(양볼락아목), Lepidotrigla longifaciata 자어의 분자동정 및 형태기재 (Molecular Identification and Morphological Description of Larva of the Previously Unrecorded Species Lepidotrigla longifaciata (Scopaenoidei: Triglidae) from the Southeastern Sea of Jeju Island of Korea)

  • 장재훈;지환성;유효재;김진구
    • 한국어류학회지
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    • 제36권1호
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    • pp.101-106
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    • 2024
  • 2020년 5월 제주도 남동부 해역에서 봉고네트로 성대과 자어 1개체(전장 5.14 mm)가 채집되었다. 본종은 mtDNA COI 염기서열 분석을 통해 우리나라에서 처음 보고되는 달재속 1 미기록종, Lepidotrigla longifaciata로 확인되었다. 본종의 전기자어의 형태적 특징은 긴 주둥이, 큰 입, 부채 모양의 큰 가슴지느러미를 가지며, 흑색소포는 복강과 목덜미에만 관찰되었다. 우리나라에서 처음 발견된 본종의 신국명으로 '긴머리 달재'를 제안한다.

Population genetic structure based on mitochondrial DNA analysis of Ikonnikov's whiskered bat (Myotis ikonnikovi-Chiroptera: Vespertilionidae) from Korea

  • Park, Soyeon;Noh, Pureum;Choi, Yu-Seong;Joo, Sungbae;Jeong, Gilsang;Kim, Sun-Sook
    • Journal of Ecology and Environment
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    • 제43권4호
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    • pp.454-461
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    • 2019
  • Background: Ikonnikov's whiskered bat (Myotis ikonnikovi) is found throughout the Korean Peninsula, as well as in Kazakhstan, Russia, Mongolia, China, and Japan. It is small-sized and primarily inhabits old-growth forests. The decrease and fragmentation of habitats due to increased human activity may influence the genetic structure of bat populations. This study was designed to elucidate the population genetic structure of M. ikonnikovi using mitochondrial genes (cytochrome oxidase I and cytochrome b). Results: The results showed that M. ikonnikovi populations from Korea have high genetic diversity. Although genetic differentiation was not detected for the COI gene, strong genetic differentiation of the Cytb gene between Mt. Jeombong and Mt. Jiri populations was observed. Moreover, the results indicated that the gene flow of the maternal lineage may be limited. Conclusions: This study is the first to identify the genetic population structure of M. ikonnikovi. We suggest that conservation of local populations is important for sustaining the genetic diversity of the bat, and comprehensive studies on factors causing habitat fragmentation are required.

New Record of the Bigtooth Pomfret Brama orcini (Pisces: Bramidae) from Korea

  • Lee, Woo Jun;Kim, Jin-Koo;Kai, Yoshiaki
    • Fisheries and Aquatic Sciences
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    • 제17권4호
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    • pp.497-501
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    • 2014
  • A single specimen of Brama orcini (267.0 mm standard length, SL), belonging to the family Bramidae, was collected by purse seine from Jeju Strait, Korea, in December 2013. The specimen is characterized by having 16 gill rakers, 54 lateral line scales, and 36 vertebrae. B. orcini is distinguished from the most similar species, Brama japonica, by the number of lateral line scales (52-54 in B. orcini vs. 65-75 in B. japonica). We propose a new Korean name "Keun-bi-neul-sae-da-rae" for B. orcini.

New record of Juvenile Stethojulis trilineata (Perciformes: Labridae) from Korea, Revealed by Molecular Analysis

  • Bae, Seung Eun;Kwun, Hyuck Joon;Kim, Jin-Koo
    • Fisheries and Aquatic Sciences
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    • 제16권4호
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    • pp.319-323
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    • 2013
  • A single specimen of a juvenile Stethojulis trilineata was first collected from the coastal waters of Ulsan, Korea, in October 2012. This species is characterized by IX dorsal fin spines, 26 lateral line scales, 25 vertebrae, dark spots between the 10th and 11th dorsal fin rays, and a caudal peduncle region. The new Korean name proposed is "Se-jul-mu-ji-gae-nol-rae-gi" for S. trilineata.

New report of Diekeana insignis(Gorham, 1892) (Coleoptera: Coccinellidae: Epilachnini) in South Korea

  • Sang Woo Jung;I Chan Shin;Yoon-Ho Kim
    • Journal of Species Research
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    • 제12권3호
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    • pp.240-243
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    • 2023
  • The genus and species, Diekeana insignis(Gorham), is reported for the first time in Korea. Male adults were collected from Geoje Island and Changwon-si, located in the southern part of South Korea. The species of D. insignis(Gorham) is characterized by the following morphological characteristics: body length about 9.4mm; pronotum with transverse black marking in the middle part; each elytron with seven large black markings; penis long, slightly bent at apical part, truncate at apex; parameres narrow and as long as penis guide; penis guide narrow and pointed at apex. We herein provide habitus photographs, illustrations of morphological characters, male genitalia, and a detailed diagnosis. A partial sequence of the mitochondrial COI gene was obtained and provided mtDNA information for this species.

Diet composition of the Korean wild boar Sus scrofa coreanus (Suidae) at Mt. Jeombongsan, Korea

  • Shin, Hyung-Min;Kim, Jihee;Jin, Seon Deok;Won, Ho-Yeon;Park, Sangkyu
    • Journal of Ecology and Environment
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    • 제44권3호
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    • pp.143-154
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    • 2020
  • Background: Korean wild boars (Sus scrofa coreanus Heude), because of their adaptability, are a widespread large mammal; however, they sometimes cause problems by invading farms and eating the crops, creating insufficiencies of some foods in South Korea. To understand the diet composition of Korean wild boars according to sex and body size, we collected their feces from Mt. Jeombongsan, Seoraksan National Park, South Korea. The sizes of fecal samples were measured, and genomic DNA was extracted from the samples. We amplified specific loci targeting plants (rbcL and trnL) and animals (COI) to detect the food sources of this omnivore and amplified the ZF and SRY regions to determine the sex. Results: In the wild boar feces, Rosaceae and Bryophyte were the most frequently detected plant food sources at the family level and Diptera and Haplotaxida were the most frequently detected animal food sources at the order level. As a result of sex determination, the sex ratio of wild boars collected in the Mt. Jeombongsan area was approximately 1:1. Our result suggested that there is no significant difference between the diet composition of male and female boars. Based on the average cross-sectional area of the feces, the top 25% were classified into the large body size group and the bottom 25% were classified into the small body size group. The large body size group mainly preferred Actinidiaceae, and the small body size group most frequently consumed Fagaceae. The diet of the large body size group was more diverse than the small body size group. Conclusions: Our results showed that the wild boars preferred Rosaceae, especially Sanguisorba and Filipendula, as plant food sources, and Diptera and Coleoptera of Insecta as animal food sources. Based on the results, the dietary preferences of wild boar appear to be distinguished by not their sex but their body size. Our study could help to elucidate the feeding ecology and population structure of wild boar, as well as address conservation and management issues.

뉴질랜드 곱상어속 어류, Squalus acanthias와의 형태 및 분자 비교에 의한 한국산 "곱상어"의 Squalus suckleyi (돔발상어과, 연골어강)로의 학명 변경 (Change of the Scientific Name for Piked Dogfish in Korea to Squalus suckleyi (Squalidae, Chondrichthyes) Based on Morphological and Molecular Comparisons of Squalus acanthias from New Zealand)

  • 이우준;김성용;김진구
    • 한국수산과학회지
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    • 제49권4호
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    • pp.493-498
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    • 2016
  • Squalus acanthias has been considered the valid scientific name for piked dogfish by many taxonomists, although others recognize two valid species, Squalus suckleyi and S. acanthias, based on differences in the numbers of precaudal vertebrae and their distribution. We compared Korean piked dogfish with S. acanthias from New Zealand using morphological and molecular methods to elucidate the taxonomy. The Korean piked dogfish was distinguished from S. acanthias from New Zealand by the number of precaudal vertebrae (70-75 in the former vs. 77-80 in the latter) and 540 base pairs in the mitochondrial DNA cytochrome c oxidase subunit I sequence (genetic distance: 0.007-0.013). Therefore, we suggest that the scientific name of the Korean piked dogfish be changed from S. acanthias to S. suckleyi.