• Journal of Ginseng Research
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• 제40권4호
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• pp.315-324
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• 2016

Background: Biocontrol agents are regarded as promising and environmental friendly approaches as agrochemicals for phytodiseases that cause serious environmental and health problems. Trichoderma species have been widely used in suppression of soil-borne pathogens. In this study, an endophytic fungus, Trichoderma gamsii YIM PH30019, from healthy Panax notoginseng root was investigated for its biocontrol potential. Methods: In vitro detached healthy roots, and pot and field experiments were used to investigate the pathogenicity and biocontrol efficacy of T. gamsii YIM PH30019 to the host plant. The antagonistic mechanisms against test phytopathogens were analyzed using dual culture, scanning electron microscopy, and volatile organic compounds (VOCs). Tolerance to chemical fertilizers was also tested in a series of concentrations. Results: The results indicated that T. gamsii YIM PH30019 was nonpathogenic to the host, presented appreciable biocontrol efficacy, and could tolerate chemical fertilizer concentrations of up to 20%. T. gamsii YIM PH30019 displayed antagonistic activities against the pathogenic fungi of P. notoginseng via production of VOCs. On the basis of gas chromatography-mass spectrometry, VOCs were identified as dimethyl disulfide, dibenzofuran, methanethiol, ketones, etc., which are effective ingredients for antagonistic activity. T. gamsii YIM PH30019 was able to improve the seedlings' emergence and protect P. notoginseng plants from soil-borne disease in the continuous cropping field tests. Conclusion: The results suggest that the endophytic fungus T. gamsii YIM PH30019 may have a good potential as a biological control agent against notoginseng phytodiseases and can provide a clue to further illuminate the interactions between Trichoderma and phytopathogens.

• 지질공학
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• 제33권2호
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• pp.257-273
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• 2023

본 연구에서는 철원 샘통과 그 일대의 지하수 및 지표수의 지구화학 및 미생물 군집 특성을 분석하였다. 2022년 12월 15일 철원 샘통 5개, 지하수 3개 그리고 지표수 2개, 총 10개 지점에서 야외조사를 수행하였다. 수화학분석 결과 샘통과 지표수는 모두 Ca-HCO₃ 유형에 도시되었으며, 지하수 한 지점(CSG3)을 제외한 나머지 지점은 모두 Na-HCO₃ 유형에 도시되었다. 또한 모든 지점은 같은 기상수의 기원으로 물암석 반응이 우세하게 영향을 준 것으로 보인다. 라돈 농도 분석 결과 지표수는 1,000 Bq/m³ 이하, 샘통은 1,000~10,000 Bq/m³, 지하수는 1,000~1,000,000 Bq/m³의 농도 값을 보였다. 미생물 군집 구조 분석 결과 문(phylum) 비율 중 가장 우점종은 Proteobacteria, Planctomyceta, Verrucomicrobia, Acidobacteria, Actinomycetota 순으로 나타났다. 비계량적 다차원 척도법 모델링(NMDS)에서는 수온, pH, Si가 현장의 토착미생물과 밀접한 연관성을 보였다. NMDS와 CCA 결과에서 샘통에 영향을 미치는 주요 환경적 요소는 온도, Mg, Si로 나타나며, 그 환경적인 영향과 관련된 주요 미생물은 Acidobacteria와 Proteobacteria 중 Pseudomonas brenneri이다. 수화학 및 미생물 군집 분석 모두 샘통과 지하수 CSG3 지점에서 유사한 결과를 보였으며, 현무암 대수층의 영향을 받은 것으로 추정된다.

• 한국지구과학회지
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• 제28권1호
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• pp.112-122
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• 2007

석탄회는 독특한 화학조성과 광물학적 특성을 나타내는 것으로 알려져 있다. 석탄회의 철산화광물에는 중금속원소들이 다량 농집되어 있어서 침출이 일어나는 환경에서는 토양과 지하수 및 해양오염의 가능성이 높다. 본 연구에서는 해안가에 위치한 당진화력 발전소에서 배출하고 있는 석탄회와 주변 해수와의 반응과정에서 토착 미생물이 어떤 역할을 하는지를 알아보고자 하였다. 이를 위해 해수와 석탄회를 혼합하여 배양기에 60일 동안 보관하면서 물시료와 석탄회 시료를 분석함으로써 박테리아의 활동에 따른 광물의 상변화 및 해수의 지화학적 변화 정도를 살펴보았다. 매립호수에서 해수의 평균 pH는 8.97이다. 지화학적 변화 결과에 비추어 볼 때, 박테리아의 활동은 실험 시작 7일 이후부터 급격하게 활성화되었다. ${SO_4}^{2-}$는 글루코스를 첨가한 시료에서 다른 처리방식에 비해 현저하게 감소하는 경향을 나타낸다. 매립호수에 서식하는 박테리아는 주로 Mn, Fe, Zn와 반응하여 매립호수로부터 금속이온을 제거시킬 수 있을 뿐 아니라 탄산염 광물을 형성하는 과정에서 이산화탄소를 고정시킬 수 있는 역할도 할 수 있을 것으로 기대된다.

• Asian-Australasian Journal of Animal Sciences
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• 제27권1호
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• pp.1-9
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• 2014

Calcium (Ca) and phosphorus (P) are minerals that have important physiological functions in the body. For formulation of diets for pigs, it is necessary to consider an appropriate Ca:P ratio for an adequate absorption and utilization of both minerals. Although both minerals are important, much more research has been conducted on P digestibility than on Ca digestibility. Therefore, this review focuses on aspects that are important for the digestibility of Ca. Only values for apparent total tract digestibility (ATTD) of Ca have been reported in pigs, whereas values for both ATTD and standardized total tract digestibility (STTD) of P in feed ingredients have been reported. To be able to determine STTD values for Ca it is necessary to determine basal endogenous losses of Ca. Although most Ca is absorbed in the small intestine, there are indications that Ca may also be absorbed in the colon under some circumstances, but more research to verify the extent of Ca absorption in different parts of the intestinal tract is needed. Most P in plant ingredients is usually bound to phytate. Therefore, plant ingredients have low digestibility of P due to a lack of phytase secretion by pigs. During the last 2 decades, inclusion of microbial phytase in swine diets has improved P digestibility. However, it has been reported that a high inclusion of Ca reduces the efficacy of microbial phytase. It is possible that formation of insoluble calcium-phytate complexes, or Ca-P complexes, not only may affect the efficacy of phytase, but also the digestibility of P and Ca. Therefore, Ca, P, phytate, and phytase interactions are aspects that need to be considered in Ca digestibility studies.

• 한국가금학회지
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• 제45권3호
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• pp.209-217
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• 2018

The innate immune recognition is based on the detection of microbial products. Toll-like receptors (TLRs) located on the cell surface and the endosome senses microbial components and nucleic acids, respectively. Chicken TLRs mediate immune responses by sensing ligands from pathogens, have been studied as immune adjuvants to increase the efficacy of vaccines. Single nucleotide polymorphisms (SNPs) of TLR3 and TLR4 genes in chicken were associated with resistance and susceptibility to viral infection. In this study, SNPs of chTLR3 and chTLR4 genes were retrieved from public database and annotated with chicken reference genome. Three-dimensional models of the chTLR3 and chTLR4 proteins were built using a Swiss modeler. We identified 35 and 13 nsSNPs in chTLR3 and chTLR4 genes respectively. Sorting Intolerant from Tolerant (SIFT) and Polymorphism Phenotyping v2 (Polyphen-2) analyses, suggested that, out of 35 and 13 nsSNPs, 4 and 2 SNPs were identified to be deleterious in chTLR3 and chTLR4 gene respectively. In chTLR3, 1 deleterious SNP was located in ectodomain and 3 were located in the Toll / IL-1 receptor (TIR) domain. Further structural model of chTLR3-TIR domain suggested that 1 deleterious SNP be present in the B-B loop region, which is important for TIR-TIR domain interactions in the downstream signaling. In chTLR4, the deleterious SNPs were located both in the ectodomain and TIR domain. SNPs predicted for chTLR3 and chTLR4 in this study, might be related to resistance or susceptible to viral infection in chickens. Results from this study will be useful to develop the effective measures in chicken against infectious diseases.

• 한국미생물·생명공학회지
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• 제33권1호
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• pp.9-15
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• 2005

Chitin deacetylase(CDA; EC 3.5.1.41)는 키틴의 N-acetamide bonds를 가수분해하여 이를 키토산으로 전환시키는 효소다. 한편, 키토산은 의약, 화장품, 식품, 농업 등의 분야에서 다양하게 응용되는 고분자 다당류이다. 본 논문에서는 미생물 유래 CDA의 분포, 분석법, 효소적 특성, 기질 특이성, 작용기작, 유전자의 구조, 생물학적 역할, 응용 등의 최신 지견을 기술하고자 하였다. 미생물 CDA가 세포벽 형성과 식물-미생물 상호작용에 관여한다는 연구결과들을 제시하였으며, CDA의 유전자 구조를 다양한 acetylated poly/oligo-saccharides를 탈아세틸화하는 family 4 carbohydrate esterase의 유전자 구조와 비교하였다. 키틴의 탈아세틸화로 키토산을 제조하는 과정에 CDA의 활용 가능성과, CDA를 포함한 고활성의 키틴 대사효소들을 분비하는 곤충 병원균의 활용 가능성도 살펴보았다.

• Journal of Microbiology and Biotechnology
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• 제14권4호
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• pp.730-736
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• 2004

This study aims at characterizing the bacteriophages isolated from activated sludge performing enhanced biological phosphorous removal (EBPR) to understand the interactions between the phage-host system and bacterial community. Sixteen bacterial isolates (E1-E16) were isolated as host bacterial strains from EBPR activated sludge for phage isolation. Forty bacteriophages based on their plaque sizes (2 plaques on E4, 4 on E8, 11 on E10, 5 on E14, 18 on E16) were obtained from filtered supernatant of the EBPR activated sludge. Each bacteriophage did not make any plaque on bacterial strains tested in this study except on its own host bacterial strain, respectively, indicating that the bacteriophages are with narrow host specificity. However, fourteen of the forty bacteriophages obtained in this study lost their virulent ability even on their own host bacteria. All of the lytic phages showed similar one-step growth patterns and had long latent period (about 9 hours) to reproduce their phage particles in their host bacterial cells. On the other hand, their probable burst sizes (6 to 48 per host cell) were large enough to actively lyse their host bacterial cells. Therefore, it could be implied that bacteriophages are also important members of the microbial community in EBPR activated sludge, and lytic phages directly decrease the population size of their host bacterial groups in EBPR activated sludge by lysis.

• The Plant Pathology Journal
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• 제29권1호
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• pp.17-30
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• 2013

Barley stripe mosaic virus (BSMV) induces massive actin filament thickening at the infection front of infected Nicotiana benthamiana leaves. To determine the mechanisms leading to actin remodeling, fluorescent protein fusions of the BSMV triple gene block (TGB) proteins were coexpressed in cells with the actin marker DsRed: Talin. TGB ectopic expression experiments revealed that TGB3 is a major elicitor of filament thickening, that TGB2 resulted in formation of intermediate DsRed:Talin filaments, and that TGB1 alone had no obvious effects on actin filament structure. Latrunculin B (LatB) treat-ments retarded BSMV cell-to-cell movement, disrupted actin filament organization, and dramatically decreased the proportion of paired TGB3 foci appearing at the cell wall (CW). BSMV infection of transgenic plants tagged with GFP-KDEL exhibited membrane proliferation and vesicle formation that were especially evident around the nucleus. Similar membrane proliferation occurred in plants expressing TGB2 and/or TGB3, and DsRed: Talin fluorescence in these plants colocalized with the ER vesicles. TGB3 also associated with the Golgi apparatus and overlapped with cortical vesicles appearing at the cell periphery. Brefeldin A treatments disrupted Golgi and also altered vesicles at the CW, but failed to interfere with TGB CW localization. Our results indicate that actin cytoskeleton interactions are important in BSMV cell-to-cell movement and for CW localization of TGB3.

• Animal Bioscience
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• 제36권11호
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• pp.1727-1737
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• 2023

Objective: The poultry industry is a primary source of animal protein worldwide. The gut microbiota of poultry birds, such as chickens and ducks, is critical in maintaining their health, growth, and productivity. This study aimed to identify longitudinal changes in the gut microbiota of laying hens from birth to the pre-laying stage. Methods: From a total of 80 Hy-Line Brown laying hens, birds were selected based on weight at equal intervals to collect feces (n = 20 per growth) and ileal contents (n = 10 per growth) for each growth stage (days 10, 21, 58, and 101). The V4 regions of the 16S rRNA gene were amplified after extracting DNA from feces and ileal contents. Amplicon sequencing was performed using Illumina, followed by analysis. Results: Microbial diversity increased with growth stages, regardless of sampling sites. Microbial community analysis indicated that Firmicutes, Proteobacteria, and Bacteroidetes were the dominant phyla in the feces and ileal. The abundance of Lactobacillus was highest on day 10, and that of Escherichia-shigella was higher on day 21 than those at the other stages at the genus level (for the feces and ileal contents; p<0.05). Furthermore, Turicibacter was the most abundant genus after changing feed (for the feces and ileal contents; p<0.05). The fecal Ruminococcus torques and ileal Lysinibacillus were negatively correlated with the body weights of chickens (p<0.05). Conclusion: The gut microbiota of laying hens changes during the four growth stages, and interactions between microbiota and feed may be present. Our findings provide valuable data for understanding the gut microbiota of laying hens at various growth stages and future applied studies.

• Molecules and Cells
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• 제38권12호
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• pp.1111-1117
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• 2015

Toll-like receptor 5 (TLR5) is a specific receptor for microbial flagellin and is one of the most well-known receptors in the TLR family. We reported previously that TLR5 signaling is well maintained during aging and that caveolin-1 may be involved in TLR5 signaling in aged macrophages through direct interactions. Therefore, it is important to clarify whether caveolin-1/TLR5 interactions affect TLR5 expression during aging. To assess the effect of caveolin-1 on TLR5, we analyzed TLR5 expression in senescent fibroblasts and aged tissues expressing high levels of caveolin-1. As expected, TLR5 mRNA and protein expression was well maintained in senescent fibroblasts and aged tissues, whereas TLR4 mRNA and protein were diminished in those cells and tissues. To determine the mechanism of caveolin-1-dependent TLR5 expression, we examined TLR5 expression in caveolin-1 deficient mice. Interestingly, TLR5 mRNA and protein levels were decreased dramatically in tissues from caveolin-1 knockout mice. Moreover, overexpressed caveolin-1 in vitro enhanced TLR5 mRNA through the MAPK pathway and prolonged TLR5 protein half-life through direct interaction. These results suggest that caveolin-1 may play a crucial role in maintaining of TLR5 by regulating transcription systems and increasing protein half-life.