• Title/Summary/Keyword: methods comparison

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Identifying differentially expressed genes using the Polya urn scheme

  • Saraiva, Erlandson Ferreira;Suzuki, Adriano Kamimura;Milan, Luis Aparecido
    • Communications for Statistical Applications and Methods
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    • v.24 no.6
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    • pp.627-640
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    • 2017
  • A common interest in gene expression data analysis is to identify genes that present significant changes in expression levels among biological experimental conditions. In this paper, we develop a Bayesian approach to make a gene-by-gene comparison in the case with a control and more than one treatment experimental condition. The proposed approach is within a Bayesian framework with a Dirichlet process prior. The comparison procedure is based on a model selection procedure developed using the discreteness of the Dirichlet process and its representation via Polya urn scheme. The posterior probabilities for models considered are calculated using a Gibbs sampling algorithm. A numerical simulation study is conducted to understand and compare the performance of the proposed method in relation to usual methods based on analysis of variance (ANOVA) followed by a Tukey test. The comparison among methods is made in terms of a true positive rate and false discovery rate. We find that proposed method outperforms the other methods based on ANOVA followed by a Tukey test. We also apply the methodologies to a publicly available data set on Plasmodium falciparum protein.

Discrimination of neutrons and gamma-rays in plastic scintillator based on spiking cortical model

  • Bing-Qi Liu;Hao-Ran Liu;Lan Chang;Yu-Xin Cheng;Zhuo Zuo;Peng Li
    • Nuclear Engineering and Technology
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    • v.55 no.9
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    • pp.3359-3366
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    • 2023
  • In this study, a spiking cortical model (SCM) based n-g discrimination method is proposed. The SCM-based algorithm is compared with three other methods, namely: (i) the pulse-coupled neural network (PCNN), (ii) the charge comparison, and (iii) the zero-crossing. The objective evaluation criteria used for the comparison are the FoM-value and the time consumption of discrimination. Experimental results demonstrated that our proposed method outperforms the other methods significantly with the highest FoM-value. Specifically, the proposed method exhibits a 34.81% improvement compared with the PCNN, a 50.29% improvement compared with the charge comparison, and a 110.02% improvement compared with the zero-crossing. Additionally, the proposed method features the second-fastest discrimination time, where it is 75.67% faster than the PCNN, 70.65% faster than the charge comparison and 38.4% slower than the zero-crossing. Our study also discusses the role and change pattern of each parameter of the SCM to guide the selection process. It concludes that the SCM's outstanding ability to recognize the dynamic information in the pulse signal, improved accuracy when compared to the PCNN, and better computational complexity enables the SCM to exhibit excellent n-γ discrimination performance while consuming less time.

Comparison of MPPT Based on Fuzzy Logic Controls for PMSG

  • Putri, Adinda Ihsani;Choi, Jaeho
    • Proceedings of the KIPE Conference
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    • 2011.11a
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    • pp.285-286
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    • 2011
  • Maximum Power Point Tracker (MPPT) is the big issue in generating power based on Wind Energy Conversion System. In case of unknown turbine characteristic, it is useful to implement MPPT based on fuzzy logic control. This kind of control is able to find the value of duty cycle to meet maximum power point at particular wind speed. There are many methods to develop MPPT based fuzzy logic controls. In this paper, two of the methods are compared both at low and high fluctuating wind speed.

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An Experimental Study on the Effect of Capping Type of Cylindrical Concrete Specimen on Compressive Strength (원주형 콘크리트 공시체의 캡핑종류별 압축강도 영향)

  • 이상완;김수만;백승종;김광돈;이평석
    • Proceedings of the Korea Concrete Institute Conference
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    • 2000.10a
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    • pp.167-172
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    • 2000
  • There are a variety of factors affecting measured compressive strength of hardened concrete. One of them is the end surface condition of concrete specimen. So, many capping methods have been developed for the specimen to meet the end condition requirement of ASTM C 39. A series of experimental strength comparison study was carried out using several representative capping methods, including pad capping method which is one of unbonded elastomeric capping system and was newly adopted in the ASTM standard. A comparison was also focused on their economy, convenience, harmfulness, etc.

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Comparison of Sound Source Localization Methods Based on Zero Crossings

  • Park, Yong-Jin;Lee, Soo-Yeon;Park, Hyung-Min
    • The Journal of the Acoustical Society of Korea
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    • v.28 no.3E
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    • pp.79-87
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    • 2009
  • This paper reviews several multi-source localization methods which estimate ITDs based on zero crossings (ZCs). Employing signal-to-noise ratio (SNR) estimation from ITD variances, these ZC-based source localization methods are more robust to diffuse noise than the cross-correlation (CC)-based one with less computational complexity. In order to take reverberant environments into account, two approaches detect intervals which dominantly contain direct-path components from sources to sensors because they may effectively provide reliable ITDDs corresponding to source directions. One accomplishes the detection by comparing the original and cepstral-prefiltering-processed envelopes, and the other searches sudden increase of acoustic energy by considering typical characteristics of acoustic reverberation. Experiments for comparison of these methods demonstrate that the approach with energy-based detection efficiently achieves multi-source localization in reverberant environments.

Comparison of Reliability Estimation Methods for One-shot Systems Using Accelerated Life Tests (가속수명시험을 이용한 원샷 시스템의 신뢰도 추정방법 비교)

  • Son, Young-Kap;Jang, Hyun-Jung
    • Journal of Korean Institute of Industrial Engineers
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    • v.36 no.4
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    • pp.212-218
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    • 2010
  • This paper shows accuracy comparison results of reliability estimation methods for one-shot systems with respect to sample sizes. To compare accuracy in reliability estimation methods, quantal-response data, characterizing one-shot systems, were simulated using failure times of LED obtained through the accelerated life test, and then the true reliability over time was evaluated using the failure times. The simulated quantal-response data were used to estimate the true reliability through applying reliability estimation methods in open literature. Accuracy of each reliability estimation method was compared in terms of both SSE (Sum of Squared Error) and MSE (Mean Squared Error), and then estimation trend for each method is found. Feasible bounds which true reliability would exist within were estimated through applying the found trends to quantal-response data set of a real weapon system.

Statistical Methods in Non-Inferiority Trials - A Focus on US FDA Guidelines -

  • Kang, Seung-Ho;Wang, So-Young
    • The Korean Journal of Applied Statistics
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    • v.25 no.4
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    • pp.575-587
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    • 2012
  • The effect of a new treatment is proven through the comparison of a new treatment with placebo; however, the number of parent non-inferiority trials tends to grow proportionally to the number of active controls. In a non-inferiority trial a new treatment is approved by proof that the new treatment is not inferior to an active control; however, both additional assumptions and historical trials are needed to show (through the comparison of the new treatment with the active control in a non-inferiority trial) that the new treatment is more efficacious than a putative placebo. The two different methods of using the historical data: frequentist principle method and meta-analytic method. This paper discusses the statistical methods and different Type I error rates obtained through the different methods employed.

Nonparametric Tests for 2×2 Cross-Over Design

  • Gee, Kyuhoon;Kim, Dongjae
    • Communications for Statistical Applications and Methods
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    • v.19 no.6
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    • pp.781-791
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    • 2012
  • A $2{\times}2$ Cross-over design is widely used in clinical trials for comparison studies of two kinds of drugs or medical treatments. This design has many statistical methods such as Hills-Armitage's (1979) method or Koch's (1972) method. In this paper, we propose a nonparametric test for $2{\times}2$ Cross-over design based on a two-sample test suggested by Baumgartner et al. (1998). In addition, a Monte Carlo simulation study is adapted to compare the power of the proposed methods with those of previous methods.

Comparison of the Node Method and the Pipeline Method for the Analysis of Water Distribution Systems (배수관망해석(配水管網解析)에 있어서 절점유출법(節点流出法)과 관로유출법(管路流出法)의 비교(比較))

  • Lee, Sang Mok;Lyu, Jong Hyun;Hyun, In Hwan
    • Journal of Korean Society of Water and Wastewater
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    • v.10 no.4
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    • pp.85-93
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    • 1996
  • This study is to make a comparison between the node method and the pipeline method for the analysis of the water distribution systems. For these purposes, the two methods were applied to a pipeline system in series, an artificial distribution network and a real distribution network. The results are as follows. 1. The difference between the results of the two methods was increased with the increase of the hydraulic gradient and the length between two adjacent nodes. 2. When all pipe lengths between two adjacent nodes were larger than 200~300m and have the steep hydraulic gradient, it was found that the results of the two methods showed high differences. 3. The difference between the results of the two methods were negligible in the case of the real distribution system in which only 12% whole pipelines were longer than 30m and the longest pipe length was 850m.

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Comparison Study on Quality Characteristics of Surface Treatment of Stone Board Materials by Water-jet System and Flame-burner (워터젯 수압분사와 화염버너에 의한 석판재 표면처리의 품질특성 비교연구)

  • 강지호;장명환
    • Journal of the Korea Safety Management & Science
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    • v.5 no.1
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    • pp.115-128
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    • 2003
  • To comparison the surface treatment methods of stone board materials, the results of Dorry's abrasive test were 23.4 for water-jet system and 18.9 for flame-burner system. Therefore abrasive hardness, the stone board materials by the water-jet system was greater than one by flame-jet system. As a result of Shore's hardness test, the stone board materials by water-jet system was twice greater than one by flame-jet system. Authors carried out microscopic observation to survey a defection of the composition minerals for two methods, but all of the both methods have not founded a defection. Therefore, the stone board materials by water-jet system was greater durability than one by flame-jet for the surface treatment methods.