• Title/Summary/Keyword: i-vectors

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Genes of Rhodobacter sphaeroides 2.4.1 Regulated by Innate Quorum-Sensing Signal, 7,8-cis-N-(Tetradecenoyl) Homoserine Lactone

  • Hwang, Won;Lee, Ko-Eun;Lee, Jeong-Kug;Park, Byoung-Chul;Kim, Kun-Soo
    • Journal of Microbiology and Biotechnology
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    • v.18 no.2
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    • pp.219-227
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    • 2008
  • The free-living photoheterotrophic Gram-negative bacterium Rhodobacter sphaeroides possesses a quorum-sensing (QS) regulatory system mediated by CerR-CerI, a member of the LuxR-LuxI family. To identify the genes affected by the regulatory system, random lacZ fusions were generated in the genome of R. sphaeroides strain 2.4.1 using a promoter-trapping vector, pSG2. About 20,000 clones were screened and 23 showed a significantly different level of ${\beta}$-gal activities upon the addition of synthetic 7,8-cis-N-tetradecenoyl-homoserine lactone (RAI). Among these 23 clones, the clone showing the highest level of induction was selected for further study, where about a ten-fold increase of ${\beta}$-gal activity was exhibited in the presence of RAI and induction was shown to be required for cerR. In this clone, the lacZ reporter was inserted in a putative gene that exhibited a low homology with catD. A genetic analysis showed that the expression of the catD homolog was initiated from a promoter of another gene present upstream of the catD. This upstream gene showed a strong homology with luxR and hence was named qsrR (quorum-sensing regulation regulator). A comparison of the total protein expression profiles for the wild-type cells and qsrR-null mutant cells using two-dimensional gel electrophoresis and a MALDI-TOF analysis allowed the identification of sets of genes modulated by the luxR homolog.

Norovirus Quantification in Oysters Crassostrea gigas Collected from Tongyeoung, Korea (통영시 연안의 양식굴(Crassostrea gigas)에서 검출된 노로바이러스의 정량분석)

  • Shin, Soon Bum;Oh, Eun-Gyoung;Lee, Hee-Jung;Kim, Yeon Kye;Lee, Tae Seek;Kim, Ji-Hoe
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.5
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    • pp.501-507
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    • 2014
  • Norovirus (NoV) is a major cause of food poisoning outbreaks in Korea. Most NoV outbreaks originate from environmental contamination, but bivalves such as oysters are also important vectors. Oyster Crassostrea gigas contamination by NoV has been reported in Korea, but no quantitative analyses of NoV have been performed. We investigated the NoV concentration in 21 oyster samples from a Korean commercial oyster-growing area with confirmed fecal contamination from January to December 2012, using real-time reverse transcription-polymerase chain reaction. Additionally, we assessed the NoV concentration after heating to investigate the effects of heat treatment on NoV-infected oysters. In NoV-positive samples, the cycle threshold (Ct) values were 37.43-39.41 and 36.77-39.30, while viral concentrations were $8.97{\times}10^2-2.24{\times}10^2$ and $3.05{\times}10^2-7.47{\times}10^1$ copies/g for genogroups I and II, respectively. After heat treatment, NoV genogroup I decreased by 83.4%, 88.0%, 89.4% and 100% at $60^{\circ}C$, $68^{\circ}C$, $70^{\circ}C$, and $100^{\circ}C$, respectively, for 15 min, while genogroup II respectively decreased by 67.3%, 76.3%, 80.1%, and 89.8% under the same conditions.

Sound parameters for classifying individual sows(Landrace×Yorkshire) during nursing behavior (수유행동시 모돈(랜드레이스×요크셔) 발성음의 개체 판별을 위한 음성 파라미터)

  • Jeon, Jung-Hwan;Chang, Hong-Hee;Ha, Jeung-Key;Kim, Hyeon-Hui;Koo, Ja-Min;Lee, Hyo-Jong;Yeon, Seong-Chan
    • Korean Journal of Veterinary Research
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    • v.43 no.1
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    • pp.165-169
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    • 2003
  • The aim of the present study was to analyse grunts of the sows and to extract parameters from the time and frequency signals in nursing behavior. Five crossbred $Landrace{\times}Yorkshire$ sows were used on day 5 or 6 postpartum. The grunts and the behaviors of the five sows were recorded with five digital camcorders. Three parameter groups [Group I: Formant vector alone, Group II: Formant vector+parameters from time signal, Group III: Formant vector+parameters from time signal-parameters eliminated by stepwise discriminant analysis backward (SDAB)] with parameter vectors extracted from single grunts in the maximum grunting rate period were used for individuality of the sows. The parameter groups were compared by a discriminant function analysis. The classification system adopted in the Group II represented the higher discriniation rate than those in other groups (Group I: 63.3%, Group II: 83.0%, Group III: 80.0%). This study demonstrated that formant, intensity, and pitch were available sound parameters for individuality of the sows during nursing behavior.

Motion Analysis Using Competitive Learning Neural Network and Fuzzy Reasoning (경쟁학습 신경망과 퍼지추론법을 이용한 움직임 분석)

  • 이주한;오경환
    • Journal of the Korean Institute of Intelligent Systems
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    • v.5 no.3
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    • pp.117-127
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    • 1995
  • In this paper, we suggest a motion analysis method using ART-I1 competitive learning neural network and fuzzy reasoning by matching the same objects through the consecutive image sequence. we use the size and mean intensity of the region obtained from image segmentation for the region matching by the region and use a ART-I1 competitive learning neural network wh~ch has a learning ability to reflect the topology of the input patterns in order to select characteristic points to describe the shape of a region. Motion vectors for each regions are obtained by matching selected characteristic points. However, the two dimensional image, the projection of the the three dimensional real world, produces fuzziness in motion analysis due to its incompleteness by nature and the error from image segmentation used for extracting information about objects. Therefore, the belief degrees for each regions are calculated using fuzzy reasoning to l-nanipulate uncertainty in motion estimation.

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Data Detection Algorithm Based on GMM in the Acoustic Data Transmission System (음향 데이터 전송 시스템의 강인한 데이터 검출 성능을 위한 Gaussian Mixture Model 기반 연구)

  • Song, Ji-Hyun;Chang, Joon-Hyuk;Kim, Moon-Kee;Kim, Dong-Keon
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.48 no.4
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    • pp.136-141
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    • 2011
  • In this paper, we propose an approach to improve the data detection performance of the acoustic data transmission system based on the modulated complex lapped transform (MCLT). We first present an effective analysis of the features and the detection method of data in the acoustic data transmission system. And then feature vectors which are applied to the Gaussian mixture model (GMM) are selected from relevant parameters of the previous system for the efficient data detection. For the purpose of evaluating the performance of the proposed algorithm, Bit error rate (BER) of the received data was measured at different environments (music genres (rock, pop, classic, jazz) and different distances (1m∼5m) from the loudspeaker to the microphone in a office room) and yields better results compared with the conventional scheme of the acoustic data transmission system based on the MCLT.

Turbo Coded OFDM for Digital Audio Broadcasting System (디지털 오디오 방송을 위한 터보 부호화된 OFDM)

  • Kim, Han-Jong
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.38 no.11
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    • pp.19-29
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    • 2001
  • The Pan-European Digital Audio Broadcasting(DAH) system's performance is characterized and improved with the aid of turbo codec. From the fact that the first bit among the four coded bits at the RCPC coding defined in the Eureka 147 DAD system is not. punctured and always transmitted, this paper proposes a new turbo coded DAB system model that replaces the existing RCPC codec by a turbo codec without modifying the puncturing procedure and puncturing vectors defined in the standard DAB system for compatibility. The performance of a new system is compared to that of the conventional system under the Rician fading channel and the Rayleigh fading channel in conjunction with DAD transmission mode I and III suitable for the terrestrial single frequency network and satellite broadcasting.

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UHD TV Image Enhancement using Multi-frame Example-based Super-resolution (멀티프레임 예제기반 초해상도 영상복원을 이용한 UHD TV 영상 개선)

  • Jeong, Seokhwa;Yoon, Inhye;Paik, Joonki
    • Journal of the Institute of Electronics and Information Engineers
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    • v.52 no.3
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    • pp.154-161
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    • 2015
  • A novel multiframe super-resolution (SR) algorithm is presented to overcome the limitation of existing single-image SR algorithms using motion information from adjacent frames in a video. The proposed SR algorithm consists of three steps: i) definition of a local region using interframe motion vectors, ii) multiscale patch generation and adaptive selection of multiple optimum patches, and iii) combination of optimum patches for super-resolution. The proposed algorithm increases the accuracy of patch selection using motion information and multiscale patches. Experimental results show that the proposed algorithm performs better than existing patch-based SR algorithms in the sense of both subjective and objective measures including the peak signal-to-noise ratio (PSNR) and structural similarity measure (SSIM).

Pedestrian Recognition using Adaboost Algorithm based on Cascade Method by Curvature and HOG (곡률과 HOG에 의한 연속 방법에 기반한 아다부스트 알고리즘을 이용한 보행자 인식)

  • Lee, Yeung-Hak;Ko, Joo-Young;Suk, Jung-Hee;Roh, Tae-Moon;Shim, Jae-Chang
    • Journal of KIISE:Computing Practices and Letters
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    • v.16 no.6
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    • pp.654-662
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    • 2010
  • In this paper, we suggest an advanced algorithm, to recognize pedestrian/non-pedestrian using second-stage cascade method, which applies Adaboost algorithm to make a strong classification from weak classifications. First, we extract two feature vectors: (i) Histogram of Oriented Gradient (HOG) which includes gradient information and differential magnitude; (ii) Curvature-HOG which is based on four different curvature features per pixel. And then, a strong classification needs to be obtained from weak classifications for composite recognition method using both HOG and curvature-HOG. In the proposed method, we use one feature vector and one strong classification for the first stage of recognition. For the recognition-failed image, the other feature and strong classification will be used for the second stage of recognition. Based on our experiment, the proposed algorithm shows higher recognition rate compared to the traditional method.

A Combination Strategy for Construction of Peptide-β2m-H-2Kb Single Chain with Overlap Extension PCR and One-Step Cloning

  • Xu, Tao;Li, Xiaoe;Wu, You;Shahzad, Khawar Ali;Wang, Wei;Zhang, Lei;Shen, Chuanlai
    • Journal of Microbiology and Biotechnology
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    • v.26 no.12
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    • pp.2184-2191
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    • 2016
  • The time-consuming and high-cost preparation of soluble peptide-major histocompatibility complexes (pMHC) currently limits their wide uses in monitoring antigen-specific T cells. The single-chain trimer (SCT) of peptide-${\beta}2m$-MHC class I heavy chain was developed as an alternative strategy, but its gene fusion is hindered in many cases owing to the incompatibility between the multiple restriction enzymes and the restriction endonuclease sites of plasmid vectors. In this study, overlap extension PCR and one-step cloning were adopted to overcome this restriction. The SCT gene of the $OVA_{257-264}$ peptide-$(GS_4)_3-{\beta}2m-(GS_4)_4-H-2K^b$ heavy chain was constructed and inserted into plasmid pET28a by overlap extension PCR and one-step cloning, without the requirement of restriction enzymes. The SCT protein was expressed in Escherichia coli, and then purified and refolded. The resulting $H-2K^b/OVA_{257-264}$ complex showed the correct structural conformation and capability to bind with $OVA_{257-264}$-specific T-cell receptor. The overlap extension PCR and one-step cloning ensure the construction of single-chain MHC class I molecules associated with random epitopes, and will facilitate the preparation of soluble pMHC multimers.

Groundwater Flow Analysis Using Finite Difference Method in Volcanic Island (화산도서에서 유한차분법을 이용한 지하수 유동해석)

  • Choe, Yun-Yeong;Lee, Sun-Tak
    • Journal of Korea Water Resources Association
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    • v.33 no.5
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    • pp.611-622
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    • 2000
  • In this study, MODFLOW model is used to analyze the groundwater flow system of Seoguipo area in Cheju island, The final parameters of permeability coefficient and storage coefficient of target area can be obtained by trial and error method using the measured data of pumping rate as initial values. And it is found that the applicability for groundwater flow system is reflected well from the simulation result of the model. Seoguipo area spring water is thought to appear by relatively stable groundwater recharge below EL. 400m according to head distribution through the analysis of observed data considering topographic and geological characteristics, Lee's study(996), and the simulation result. Also it is known that point II, III, and VI show relatively large velocity vectors, and groundwater flows through the movement path which is distributed in various directions of I, II, III, IV, V, VI, and VIl form the result of velocity vector analysis using head distribution result values to analyze the groundwater flow path under unsteady flow condition.dition.

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