• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2003년도 생물공학의 동향(XIII)
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• pp.801-806
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• 2003

Pseudomonas sp. BCNU 106 accumulated approximately 4.12 mM trehalose after cultivation of 12 hr probably by the arising action of trehalose-6-phosphate synthase/phosphatase. The cDNA clones of trehalose-6-phosphate synthase/ phosphatase were isolated from Pseudomonas sp. BCNU 106, and named as PsTPS and PsTPP(Pseudomonas sp. BCNU 106 trehalose-6-phosphate synthase/phosphatase). The two mRNA levels of trehalose-6-phosphate synthase/ phosphatase peaked at 12 hr after exposure to toluene, and thereafter were declined slightly These results support an important role of trehalose accumulation by expressions of PsTPS and PsTPP in toluene-tolerance of Pseudomonas sp. BCNU 106.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2005년도 BIOINFO 2005
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• pp.78-82
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• 2005

Three of the genus Pseudomonas (P. aeruginosa, P. putida, P. syringae) show highly different phenotypic characteristics among them. Two of the three members are pathogenic and the other is non-pathogenic. Comparative analyses of the complete genomes can elucidate the genomic similarities and differences among them. We analyzed the three genomes and the genes of them to reveal the degree of conservation of chromosomes and similarity of the genes. The 2-dimensional dot plot between the pathogenic P. aeruginosa and non-pathogenic P. putida shared higher portion of the nucleotide sequences than other two combinations. Comparison of the nucleotide compositions by calculating the genome-scale plot of G+C contents and GC skew showed the variation of location. Comparison of the metabolic capabilities using the functional classification of KEGG orthology revealed that the differences in the number of genes for the specific functional categories resulted in the phenotypic differences. Finally combination of the analyses using the protein homologs supported the evolutionary distance of the P. putida obtained from other genome-scale comparisons.

• 한국미생물학회:학술대회논문집
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• 한국미생물학회 2005년도 International Meeting of the Microbiological Society of Korea
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• pp.162-165
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• 2005

Potato scab, an important disease that affects developing tubers, causes a major problem in potato cultivation. The major potato cultivation areas in Korea are located in two Northern provinces, Gangwon and Gyeonggi, and two Southern provinces, Jeju island, and South Jeolla. In these areas, potato scab is widely distributed and has caused severe problem in potato cultivation. Therefore, potato-growing areas were surveyed for identification and distribution of potato scab pathogens from 1996 to 1999. Pathogenic Streptomyces strains were isolated from potato scab lesions and six representative Streptomyces species were characterized based on their phenotypic and molecular characteristics including, pathogenicity, physiological and morphological properties, analyses of 16SrRNA genes and 16S-23S ITS region, DNA relatedness, production of thaxtomin A, and the presence of nec1 and ORFtnp gene homologs. Three species were identified as previously described Streptomyces scabies, S. turgidiscabies, and S. acidiscabies, while other three species having distinct phenotypics properties were identified as novel S. luridiscabiei, S. puniciscabiei, and S. niveiscabiei.

• 한국대기환경학회지
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• 제18권3호
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• pp.193-204
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• 2002

To investigate the relationships between the atmospheric concentrations of PCBs and temperature, quantity of both parameters was performed at an urban site in Korea from July 1999 to January 2000. The strength of correlations between total PCB and temperature was found to be significant (r = 0.752, p < 0.001). It hence indicates that total PCB contents were affected sensitively by temperature change during the sampling period. The ratio of PCB homologs and Deca-CB(PCB 209) also behaved quite similarly to the change of temperature (r>0.60, p<0.05). This may be inferable with the progress of the gas/particle partitioning to the gas phase, especially for fri-and tetra-CBs. Because they have high vapor pressure, they generally exist in the gas phase. The Clausius-Clapeyron equation was applied to the atmospheric PCB data, relating PCB partial vapor pressure to inverse temperature. This may essentially represent the temperature-controlled transition between condensed phase and atmospheric gas phase. The slopes of the resulting plot with International Council for the Explanation of the Seas (ICES) congener ranged from -2810 to -5887, with significantly steep slope and $R^2$(p< 0.005) It was inferred that the PCB atmospheric concentration was also affected by change in the surrounding conditions such as soil, lakes and trees.

• 한국대기환경학회지
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• 제17권5호
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• pp.415-424
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• 2001

The concentrations of PCBs (polychlorinated biphenyls) in air and plants (MOrus allba, Allum turberosum) were measured every other week at Hankyong University located in Ansung, Kyoung-ki province, Korea from July to November in 1999. Total concentrations of PCBs in air ranged from 19.8 to 71.9 pg/ $m^3$. It was observed in air that the concentrations of tai-chlorinated biphenyls(CBs) were higher than those of other PCB homologs probably due to their higher vapor pressure. Total concentrations of PCBs in plants ranged from 24.5 to 1,287 pg/g dry weight for Morus allba and 26.5 to 337 pg/g dry weight for Allum turberosum. A positive linear correlation was observed between log plant-air partition coefficients ( $m^3$air/g plant dry weight-defined here as the scavenging coefficient[S.C]) and log octanol-air partition coefficients ( $K_{oa}$ ) for each plant. In this study, slope of log S.C and log $K_{oa}$ for Morus allba, Allum turberosum were 1.07 ($R^2$= 0.83, p<0.01), 0.84 ($R^2$=0.53, p<0.05), respectively. This means that these plants may approach to equilibrium for air-plant partitioning.

• Asian-Australasian Journal of Animal Sciences
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• 제20권5호
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• pp.802-810
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• 2007

Fibrobacter succinogenes, a Gram-negative, anaerobic ruminal bacterium is a major fibre digesting species in the rumen. It intensively degrades plant cell walls by an erosion type of mechanism, burrowing its way through the complex matrix of cellulose and hemicellulose with the release of digestible and undigested cell wall fragments. The enzymes involved in this process include a combination of glucanases, xylanases, arabinofuranosidase(s) and esterases. The genome of the bacterium has been sequenced and this has revealed in excess of 100 putative glycosyl hydrolase, pectate lyase and carbohydrate esterase genes, which is greater than the numbers reported present in other major cellulolytic organisms for which genomes have been sequenced. Modelling of the amino acid sequences of two glycanases, CedA and EGB, by reference to crystallized homologs has enabled prediction of the major features of their tertiary structures. Two dimensional gel electrophoresis in conjunction with mass spectroscopy has permitted the documentation of proteins over expressed in F. succinogenes grown on cellulose, and analysis of the cell surfaces of mutant strains unable to bind to cellulose has enabled the identification of candidate proteins with roles in adhesion to the plant cell wall substrate, the precursor to cellulose biodegradation.

• Journal of Microbiology and Biotechnology
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• 제12권6호
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• pp.943-949
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• 2002

It has been proposed that chitin synthase 3 (CHS3)-nediated chitin synthesis during the vegetative cell cycle is regulated by chitin synthase 4 (CHS4) of Saccharomyces cerevisiae. To investigate direct protein-protein interaction between the coding products of these two genes, a domain of Chs3p that is responsible for interaction with Chs4p was identified, using the yeast two-hybrid system. This domain of 54 amino acids, termed MIRC3-4 (Maximum Interacting Region of Chs3p with Chs4p), is well conserved among CHS3 homologs of various fungi. Some mutations in MIRC3-4 resulted in a decrease in the enzymatic activity and chitin contents. Chs3p carrying those mutations exhibited weak interactions with Chs4p, when assayed by the yeast two-hybrid system. Surprisingly, all the mutants were sensitive to Calcofluor regardless of changes in enzymatic activities or chitin contents. This report deals with a core region in MIRC3-4 that affects the interaction with Chs4p.

• Journal of Microbiology and Biotechnology
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• 제25권10호
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• pp.1648-1652
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• 2015

Azaphilone polyketides are synthesized by iterative non-reducing fungal polyketide synthases (NR-fPKSs) with a C-terminus reductive domain (-R). Several azaphilone biosynthetic gene clusters contain a putative serine hydrolase gene; the Monascus azaphilone pigment (MAzP) gene cluster harbors mppD. The MAzP productivity was significantly reduced by a knockout of mppD, and the MAzP NR-fPKS-R gene (MpPKS5) generated its product in yeast only when co-expressed with mppD. Site-directed mutations of mppD for conserved Ser/Asp/His residues abolished the product formation from the MpPKS5/mppD co-expression. MppD and its homologs are thus proposed as a new protein factor involved in the product formation of NR-fPKS-R.

• Journal of Microbiology and Biotechnology
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• 제28권11호
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• pp.1937-1945
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• 2018

Malassezia pachydermatis is a commensal yeast found on the skin of dogs. However, M. pachydermatis is also considered an opportunistic pathogen and is associated with various canine skin diseases including otitis externa and atopic dermatitis, which usually require treatment using an azole antifungal drug, such as ketoconazole. In this study, we isolated a ketoconazole-resistant strain of M. pachydermatis, designated "KCTC 27587," from the external ear canal of a dog with otitis externa and analyzed its resistance mechanism. To understand the mechanism underlying ketoconazole resistance of the clinical isolate M. pachydermatis KCTC 27587, the whole genome of the yeast was sequenced using the PacBio platform and was compared with M. pachydermatis type strain CBS 1879. We found that a ~84-kb region in chromosome 4 of M. pachydermatis KCTC 27587 was tandemly quadruplicated. The quadruplicated region contains 52 protein coding genes, including the homologs of ERG4 and ERG11, whose overexpression is known to be associated with azole resistance. Our data suggest that the quadruplication of the ~84-kb region may be the cause of the ketoconazole resistance in M. pachydermatis KCTC 27587.

• Journal of Microbiology and Biotechnology
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• 제24권10호
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• pp.1327-1336
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• 2014

Bacillus amyloliquefaciens strain NJZJSB3 has shown antagonism of several phytopathogens in vitro, especially Sclerotinia sclerotiorum. Both the broth culture and cell suspension of strain NJZJSB3 could completely protect the detached leaves of canola (Brassica napus) from S. sclerotiorum infection. In pot experiments, the application of strain NJZJSB3 cell suspension ($10^8CFU/ml$) decreased the disease incidence by 83.3%, a result similar to commercially available fungicide (Dimetachlone). In order to investigate the potential biocontrol mechanisms of strain NJZJSB3, the nonvolatile antifungal compounds it produces were identified as iturin homologs using HPLC-ESI-MS. Antifungal volatile organic compounds were identified by gas chromatography-mass spectrometry. The detected volatiles toluene, phenol, and benzothiazole showed antifungal effects against S. sclerotiorum in chemical control experiments. Strain NJZJSB3 also produced biofilm, siderophores and cell-wall-degrading enzymes (protease and ${\beta}$-1,3-glucanase). These results suggest that strain NJZJSB3 can be a tremendous potential agent for the biological control of sclerotinia stem rot.