• 제목/요약/키워드: genetic system

검색결과 3,399건 처리시간 0.036초

하수관거시스템 개량 우선순위 결정 모형 (Rehabilitation Priority Decision Model for Sewer Systems)

  • 이정호;박무종;김중훈
    • 한국방재학회 논문집
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    • 제8권6호
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    • pp.7-14
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    • 2008
  • 하수관거시스템 개량의 주된 목적은 불명수(Inflow/Infiltration, I/I)를 제거함으로써 그 성능을 향상시키는데 있다. 이때 전체 하수관거시스템 내에서 개개 관거별 I/I 발생량을 정량화할 수 있다면, 전체 하수관거시스템 내에서 소유역별 해당 정보의 추출이 보다 명확해질 수 있다. 그러나 실제 현장에서는 예산 및 시간의 제약 때문에 개개 관거의 I/I 발생 정보의 획득은 거의 불가능하다. 본 연구에서는 하수 관거별 I/I 발생량을 AHP(Analytic Hierarch Process)를 이용하여 정량화하였으며, 산정된 관거별 I/I 발생량을 이용하여 효율적인 하수과거 개량 사업 시행을 위한 개량 우선순위 결정 모형(Rehabiliation Priority Decision Model for sewer system, RPDM)을 개발하였다. 개개 관거별 I/I 발생량 산정 결과에 기반하여 RPDM은 개량이 시행되는 기간 동안 발생하는 I/I 발생량을 최소화하는 소유역별 최적 개량 우선순위(Optimal Rehabilitation Priority, ORP)를 유전자 알고리즘을 이용하여 결정한다. 이때 최적 개량 우선순위에 따른 소유역별 개량 시행 시 발생하는 이익은 개량 기간 동안 하수처리장으로 들어가는 I/I의 하수처리비용(Waste Water Treatment Cost, WWTC)에 대한 절감을 의미한다. 본 연구에서는 개발된 RPDM에 의한 최적 개량 우선순위의 결과는 일반적인 하수관거 개량사업의 우선순위 결정 방법인 점수가중평가법(Numerical Weighting Method, NWM)과 최악의 개량순서에 따른 결과들과 비교되었으며, 개량 기간 동안의 I/I 처리비용이 점수가중평가법에 비하여 22%, 최악의 개량순서에 비하여 40% 감소하는 것으로 나타났다.

Associations Between TLR9 Polymorphisms and Cancer Risk: Evidence from an Updated Meta-analysis of 25,685 Subjects

  • Wan, Guo-Xing;Cao, Yu-Wen;Li, Wen-Qin;Li, Yu-Cong;Zhang, Wen-Jie;Li, Feng
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권19호
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    • pp.8279-8285
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    • 2014
  • A meta-analysis incorporating 34 case-control studies from 19 articles involving 12,197 cases and 13,488 controls was conducted to assess the effects of three genetic variants of Toll-like receptor 9 (TLR9): rs187084, rs352140, and rs5743836. Studies on associations between TLR9 polymorphisms and cancer risk were systematically searched in electronic databases. The reported odds ratios (OR) and 95% confidence intervals (CI) were pooled to assess the strength of any associations. The results showed that the rs187084 polymorphism was significantly associated with an increased risk of cancer (CC vs TC+TT: OR=1.14, 95% CI=1.02-1.28), specifically cervical cancer (C vs T: OR=1.19, 95% CI=1.05-1.34; TC vs TT: OR=1.32, 95% CI=1.10-1.58; CC vs TT: OR=1.31, 95% CI=1.03-1.68; CC+TC vs TT: OR=1.32, 95% CI=1.11-1.56), and that this association was significantly positive in Caucasians (CC vs. TC+TT: OR=1.18, 95% CI=1.01-1.38). The rs352140 polymorphism had a protective effect on breast cancer (GA vs GG: OR=0.77, 95% CI=0.66-0.89), whereas the rs5743836 polymorphism was likely protective for digestive system cancers (CC+TC vs TT: OR=0.81, 95% CI=0.66-0.98). In conclusion, our results suggest that the rs187084 polymorphism may be associated with an elevated cancer risk, whereas polymorphisms of rs352140 and rs5743836 may play protective roles in the development of breast and digestive system cancers, respectively. From the results of this meta-analysis further large-scale case-control studies are warranted to verify associations between TLR9 polymorphisms and cancer.

Cloning and Characterization of the Lactococcus lactis subsp. lactis ATCC 7962 pts HI Operon

  • Kim, Tea-Youn;Park, Rae-Jun;Chang, Hae-Choon;Chung, Dae-Kyun;Lee, Jong-Hoon;Lee, Hyong-Joo;Kim, Jeong-Hwan
    • Journal of Microbiology and Biotechnology
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    • 제10권6호
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    • pp.829-835
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    • 2000
  • The ptsH and ptsI genes of Lactococus lactis subsp. lactis ATCC 7962 (L. lactis 7962), encoding the general proteins of phosphotransferase system (PTS) components, HPr and enzyme I, respectively, were cloned and characterized. A 1.3 kb PCR product was obtained using a primer set that was hybridized to the internal region of the L. lactis 7962 pts HI genes and then subcloned into a low-copy number vector, pACYC184. The 5' upstream and 3' downstream region from the 1.3 kb fragment were subsequently clone using the chromosome walking method. The complete ptsHI operon was constructed and the nucleotide sequences determined. Two ORFs corresponding to HPr (88 amino acids) and enzyme I (575 amino acids) were located. The ptsHI genes of L. lactis 7962 showed a very high homology (84-90%) with those genes from other Gram-positive bacteria. A primer extension analysis showed that the transcription started at either one of two adjacent bases upstream of the start codon. Using a Northern analysis, two transcripts were detected; the first, a 0.3 kb transcript corresponding to ptsH and the second, a 2 kb transcript corresponding to ptsH and ptsI. The transcription level of ptsH was higher than that of ptsI. The concentration of the ptsH transcript in cells grown on glucose was similar to that in cells grown on lactose, yet higher than that in cells grown on galactose. The ptsI transcript was scarcely detected in cell grown on lactose or galactose. The ptsI transcript was scarcely detected in cells grown on lactose or galactose. The results of a sequence analysis and Northern blot confirmed that the ptsH and ptsI genes of L. lactis 7962 were arranged in an operon like other known ptsHI genes and the expression of the ptsHI genes was regulated at the transcriptional level in response to the carbon source.

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멜론 흰가루병의 race 분화 및 저항성 계통 선발을 위한 분자마커 개발 (Development of molecular marker to select resistant lines and to differentiate the races related to powdery mildew in melon (Cucumis melo L.))

  • 김회택;박종인;토모코 이시카와;마키 쿠즈야;마나부 호리이;카즈토시 야시로;노일섭
    • Journal of Plant Biotechnology
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    • 제42권4호
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    • pp.284-289
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    • 2015
  • Powdery mildew (Podosphaera xanthii) commonly occurs in cultivated fields of melon (Cucumis melo L.). It inflicts a lot of damages. Therefore, breeding resistant lines is essential. Development of a resistant line by integrating resistance gene takes a long time. In addition, break down of developed resistance by generating new virulent fungus strains increases disease susceptibility. This phenomenon was related to races of powdery mildew. Therefore, it is important to develop a DNA marker to genetically analyze race-specific resistance genes of melon powdery mildew to breed resistant lines. To date, a total of 28 races of Podosphaera xanthii have been reported in the literature. In Japan, 10 races have been reported in the Ibaraki region. We developed a system to characterize the races of Podosphaera xanthii and confirmed eight out of those 10 races in the Ibaraki region. In Korea, only one race has been characterized to date. However, some different races were detected. Through genetic analysis of resistant lines and susceptible lines of powdery mildew, resistance genes of race1 (Pm-X, PXB, and Pm-R 1), race N1 (PXA), race 2 (Pm-w and Pm-R 2), race 3 (Pm-X3), and race 5 (Pm-X5 and Pm-R5) were identified in melon. These related genes of race 1, 3, N1, 5, and race 1, 2, 5 were located at linkage group II and V, respectively. In race 1, resistance gene was located in the linkage group XII. In addition, each race-specific marker related to specific resistance gene was developed. Using race information and race selection system obtained in this study, resistant line can be bred to develop resistant cultivar for several areas. Furthermore, this will make it more easily and economically to breed resistant lines by using selected markers.

효모 감수분열과정에서의 유전자 재조합 기전 특이적 DNA 중간체의 구조 변화 (Identification of Meiotic Recombination Intermediates in Saccharomyces cerevisiae)

  • 성영진;윤상욱;김근필
    • 미생물학회지
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    • 제49권1호
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    • pp.1-7
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    • 2013
  • 유전자 재조합체는 상동염색체간의 예정된 DNA 가닥 전이와 교환이 이루어지는 상동염색체 재조합 과정에 의하여 생성된다. 이 재조합 경로는 DNA 이중 가닥 절단(double-strand breaks, DSBs)에 의해서 개시되며, 전이 과정의 중간단계에서 DNA의 구조적 변이 중간체인 단일 가닥 침투(single-end invasions, SEIs)와 이중 홀리데이 접합(double-Holliday junctions, dHJs)이 형성되어 교차성(crossover, CO) 혹은 비교차성(non-crossover, NCO) 결과물이 만들어진다. 본 연구는 이중 가닥 절단, 단일 가닥 침투, 이중 홀리데이 접합과 같은 재조합 중간체와 재조합 결과물의 구조분석에 초점을 두고, 이를 출아효모에서 인위적으로 이중 가닥 절단을 발생시킬 수 있는 HIS4LEU2 "hot spot" 을 이용한 물리적 분석방법으로 감수분열 재조합 중간체를 규명하였다. 물리적 분석을 위하여 동조화 된 세포에 감수분열을 유도한 후 hot spot 자리를 인식하는 제한효소를 처리하면, 재조합 중간체를 형성하고 있는 DNA 단편들을 Southern 분석법을 통해 탐지 및 정량 할 수 있다. 본 연구는 이 시스템으로 감수분열에서 이중가닥 절단으로부터 기인하는 단일 가닥 침투, 이중 홀리데이 접합 그리고 교차성/비교차성 재조합체로 전이되는 DNA의 구조 다형을 분석할 수 있음을 제시한다.

석위가 예쁜꼬마선충에서 Glucose로 유도된 독성에 미치는 영향 (Protective Effects of Pyrrosiae Folium on the 2% Glucose-Induced Toxicity in Caenorhabditis elegans)

  • 김봉석;이병주;이현주;안순영;박지원;윤선화;오미진;권진;이세연;차동석;오찬호;전훈
    • 생약학회지
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    • 제48권3호
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    • pp.179-186
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    • 2017
  • Pyrrosia lingua which belongs to Polypodiaceae has been used as a traditional medicine for the treatment of urinary system inflammation, urination disorder, and bronchitis. However, there are not enough phytochemical and pharmacological studies of P. lingua up to now. Here in this study, the protective effect of MeOH extract of whole plant of Pyrrosia lingua (MPL) against 2% glucose-induced toxicity was investigated using Caenorhabditis elegans (C. elegans) model system. We found that MPL significantly extended the lifespan of wild-type nematode under normal culture condition. MPL also effectively recovered the decreased lifespan caused by 2% glucose-toxicity. In addition, MPL efficiently attenuated the increased glucose concentration inside of nematode. Further studies evaluating diabetes-related factors revealed that MPL reduced both intracellular ROS and lipid accumulation which were up-regulated under 2% glucose supplement condition. Our data also showed that MPL improved the 2% glucose-induced shortened body movement of nematode. Lastly, we carried out genetic studies using several single gene knockout mutants to establish the possible target of MPL. Our results demonstrated that genes such as daf-2 and daf-16 were responsible for the protective activity of MPL against 2% glucose-induced toxicity. These results indicate that MPL exerts protective action against 2% glucose via regulation of insulin/IGF-1 sinaling pathway and FOXO activation.

캘러스의 형태와 항산화물질 첨가가 톨 페스큐의 식물체 재분화와 형질전환효율에 미치는 영향 (Effect of Callus Type and Antioxidants on Plant Regeneration and Transformation of Tall Fescue)

  • 이기원;이상훈;김도현;이동기;원성혜;이효신;이병현
    • 한국초지조사료학회지
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    • 제26권2호
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    • pp.77-82
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    • 2006
  • 유용유전자 도입을 통한 신품종 톨 페스큐를 개발할 목적으로 Agrobacterium을 이용한 효율적인 식물체 재분화 및 형질전환에 미치는 몇 가지 요인을 조사하였다. 성숙종자로부터 유도된 캘러스를 형태에 따라 3가지 type으로 분류하였고 type II 캘러스는 유백색으로 녹색을 띠며 조직적으로 치밀한 상태이며 식물체로의 재분화효율이 52.6%로 가장 높게 나타났다. 또한 재분화 배지에 $AgNO_3$와 cysteine을 동시에 첨가해 준 경우 무첨가구에 비해 캘러스 유도율은 6.7%, 식물체 재분화율은 12% 씩 각각 증가하였다. 캘러스 type 별 형질전환 효율을 조사한 결과 type II 캘러스는 58.0%로 가장 높은 형질전환효율을 나타내었다. 형질전환체를 PCR 및 PCR-Southern blot 분석을 실시하여 본 결과 발현벡터의 T-DNA 영역이 형질전환 식물체의 genome에 성공적으로 도입되었음을 확인할 수 있었다. 본 연구를 통하여 확립된 효율적인 형질전환 시스템은 분자육종을 통한 신품종 톨페스큐의 개발에 유용하게 이용될 수 있을 것이다.

운동이 유전자 조절물질에 미치는 영향에 관한 고찰 (A Review : On Exercise Performance Induction Gene Factors Change)

  • 엄기매;양윤권;김태우
    • 대한물리치료과학회지
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    • 제8권1호
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    • pp.745-758
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    • 2001
  • The purpose of study to phenomenological examine and the mechanism regarding the gene(DNA, RNA, Protein) and sports to studied, analyzed. and evaluated. This review considers the evidence for genetic effects in several determinants of endurance performance and resistance performance, namely: body measurements and physique, body fat pulmonary functions, cardiac and circulatory functions, muscle characteristics. substrate utilization, maximal aerobic power and other. Moreover, the response to aerobic training of indicators aerobic work metabolism and endurance performance is reviewed, with emphasis on the specificity of the response and the individual differences observed in training ability. This study indicate that improvement of 'Enhancer Action' in RNA genes changed by exercise or sports. Moreover exercise was effect on Central Dogma with DNA makes RNA makes Protein. and think that occurred with exercise influence on skeletal muscle into cell have to Myosin Heavy Chain (MHC) changed was after exercise performance, which accompanied into skeletal muscle that were exercise-induces gene-modulation that is, take gene mutations. This study known that existed hormone(epinephrine)-immune system with interaction. Exercise were altered insulin binding and MAP Kinase signaling increased into immune cells. This review suggested that the high rate of glutamine utilization by cells of the immune system serves to maintain a high intra cellular concentration of the intermediates of biosynthetic pathways such that optimal rates of DNA, RNA and protein synthesis can be maintained. In the absence of glutamine, lymphocytes do not proliferate in vitro: proliferation increase greatly as the glutamine concentration increase. Glutamine is synthesized in skeletal muscle. Skeletal muscle and plasma glutamine levels are lowered by sepsis, injury, bums, surgery and endurance exercise and in the overtrained athlete. The study of result show that production of ET-1 is markedly increased tissue specifically in the heart by exercise without appreciable changes in endothelin-converting enzyme and endothelial receptor expressions, suggest that myocardial ET-1 may participate in modulation of cardiac function during exercise. Conclusionally, this study indicate that improvement of 'Enhancer Action' in RNA genes changed by exercise or sports. Moreover exercise was effect on Central Dogma with DNA makes RNA makes Protein. This study is expected to contribute the area of sports science, medicine, hereafter more effort is required to establish the relation between gene alters and exercise amount.

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양식 넙치에서 분리한 Streptococcus parauberis의 동정방법에 따른 지역적 비교 (Geographical comparison on different methods for identification of Streptococcus parauberis isolated from cultured olive flounder, Paralichthys olivaceus)

  • 조미영;오윤경;이덕찬;김재훈;박명애
    • 한국어병학회지
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    • 제20권1호
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    • pp.49-60
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    • 2007
  • 우리 나라 남해안의 병든 넙치로부터 분리한 non-hemolytic Streptococcus parauberis의 지역적 특성을 구명하고자 균의 생리적, 생화학적 및 분자생물학적 분석을 실시하였다. 먼저, catalase-negative Gram-positive cocci를 대상으로 multiplex PCR을 실시하여 S. parauberis 12 균주를 선정하였으며, 표현형적 동정을 위해 시판되고 있는 API 20 Strep 및 API ZYM kit를 사용하였다. 분리 균주의 API porfile을 분석한 결과, Lactococcus lactis, S. constellatus 및 S. uberis 등으로 동정되었다. 또한, 터봇에서 분리된 S. parauberis와 비교해 볼 때 Voges-Proskauer, arginine, hippurate, alkiline phosphatase 및 pyrroidonyl arylamidase의 반응 결과는 동일하였으나, β-glucuronidase 활성은 다양한 것으로 나타났다. 약제 감수성 시험 결과에서는 florfenicol, ampicillin, ofloxacin 및 vancomycin에 대해 감수성이 있는 것으로 나타났으며, oxolinic acid, flumequine, nalidixic acid 및 sulfisoxazol에 대해 내성이 있는 것으로 나타났다. 그러나, 분리 균주의 16S rDNA 염기서열을 분석한 결과, 참조균주인 S. parauberis KCTC 3651 (AY584477)과 99%의 상동성을 나타내었으며, 넙치 분리 균주들이 유전적으로 동일한 그룹에 속하는 것으로 나타났다.

전남 화원일대의 석영맥에서 산출되는 광석광물과 이의 생성환경 (Ore Minerals and Genetic Environments of Quartz Veins from the Hwawon Area, Haenam, Korea)

  • 유봉철;오진용;강흥석;이현구
    • 자원환경지질
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    • 제39권5호
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    • pp.583-595
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    • 2006
  • 전남 해남 화원일대의 석영맥들은 선캄브리아기의 변성퇴적암류와 쥬라기의 화강암 내에 발달된 단층대를 충진한 천열수성 석영맥이다. 이들 석영맥의 광화작용은 hypogene 시기와 supergene 시기로 구분된다. Hypogene 시기의 광물은 석영, 방해석, 녹염석, 녹니석, 일라이트, 견운모로서 프로필라이트대와 점토대로 구성되며 석영맥에서 산출되는 황화광물은 황철석, 섬아연석, 황동석, 방연석, 반동석, 규버나이트, 함은사면동석, Pb-Ag-S계 광물 및 Pb-Te-S계 광물 등이 관찰된다. Supergene 시기에는 Fe-Mn 산화물, Zn-Fe 산화물 및 Pb 산화물 등이 생성되었다. 유체포유물 자료에 의하면, hypogene 시기의 균일화온도와 염농도는 각각 $291.2{\sim}397.3^{\circ}C,\;0.0{\sim}9.3\;wt.%$ 범위를 보이며, 광화유체는 일부 비등과 기원이 다른 천수와의 혼입에 의해 냉각 및 희석작용을 겪었다. 산소($-0.7{\sim}3.5%_{\circ}$(백색석영 $-0.7{\sim}3.5%_{\circ}$, 투명석영 $2.4%_{\circ}$)), 수소($-7.0{\sim}55%_{\circ}$(백색석영$-7.0{\sim}55%_{\circ}$, 투명석영: $-62%_{\circ}$))동위원소 값 자료로 볼 때, 이 석영맥의 광화유체는 마그마 기원의 유체가 광화작용이 진행됨에 따라 천수의 혼입이 작용한 것으로 해석할 수 있다.