• Title/Summary/Keyword: genetic conservation

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First Record of Gymnogobius cylindricus (Perciformes: Gobiidae) from Incheon River Estuary, Jeonbuk-do, Korea (전북 인천강 하구역에서 출현한 망둑어과(농어목) 한국미기록종, Gymnogobius cylindricus)

  • Kim, Byung-Jik;Song, Ho-Bok;An, Jung-Hyun;Choi, Seung-Ho
    • Korean Journal of Ichthyology
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    • v.25 no.3
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    • pp.173-177
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    • 2013
  • Based on a single specimen (49.9 mm SL) collected from Incheon River estuary, south-western Korea, Gymnogobius cylindricus was described as the first record from Korea as well as the westernmost record of the world. The species is characterized by having a large maxilla extend far beyond posterior margin of eye, dorsal fin with VI-I, 12 rays, anal fin with I, 11 rays, and without dark blotches and dots on lower part of body and caudal fin, respectively. A new Korean name, "Ga-neunsal-mang-dug" is proposed for the species.

Multiple Facets of Sox Gene (SOX 유전자의 다양성)

  • 홍경원;김희수
    • Journal of Life Science
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    • v.14 no.4
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    • pp.716-725
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    • 2004
  • Sox protein family, a transcription factor, has been found in whole animal kingdom, and contains a sequence-specific DNA binding domain called high mobility group domain (HMG). The Sox protein family based on the amino acid sequence of HMG domain was classified into 10 groups. Each group of Sox family shows significant conservation from nematode to human. The HMG domain affect to various developmental cell differentiation through binding to enhancer and regulating other transcription factors. Recently, many molecular biologists focus their research on the illustration of Sox-related disease, evolution and phylogeny. Especially, stem cell research with Sox gene family is indispensable field for understanding of their biological functions. The understanding of Sox genes may contribute to understand their role in human genetic disease and whole animal evolution.

Full Bloom Stage of Prunus mume and Prunus armeniaca var. ansu - Plant Genetic Resource of ex situ Conservation in Yesan - (매실나무와 살구나무 유전자원의 만개기 특성 - 예산지역 이식의 현지외보전 식물자원 -)

  • Kang, Hee Kyoung;Song, Hong Seon
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2018.04a
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    • pp.34-34
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    • 2018
  • 본 연구는 예산지역에서 현지외보전을 하는 매실나무(220여점) 및 살구나무(9점) 유전자원에 대한 개화 특성평가를 위하여 개화기를 지난 만개기를 연차별로 조사하였다. 대한민국에서 수집한 매실나무의 만개기는 이식 초기의 2012년에 4월 중순이었으나 이식 3년 후부터 4월 초순으로 약간 앞당겨졌다. 만개기는 2012년의 경우 모두 4월 11일 이후이었으나 2015년 이후는 4월 1~10일까지 70% 이상이었다. 연도별 보면 2015년과 2016년은 4월 1~5일에 가장 많이 만개하였고, 2017년과 2018년은 4월 6~10일에 가장 많이 만개하였다. 또한 일본에서 수집한 매실나무의 만개기도 대한민국 수집의 자원처럼 4월 초순이 대부분이었는데, 연도별로는 2015년, 2016년 및 2017년의 경우 4월 1~5일에 가장 많이 만개하였고, 2018년은 4월 6~10일에 가장 많이 만개하였다. 그러나 일본 수집의 매실나무 만개기는 3월말에서 4월 초순에 집중되어 3월 중순에서 4월 중순까지의 범위를 나타낸 대한민국 수집 자원과 약간의 차이를 보였다. 그리고 예산지역 현지외보전 살구나무(대한민국 수집)의 만개기는 2015년부터 2018년까지 모두 4월 1일부터 10일까지이었으며, 3월 및 4월 중순 이후에 만개한 꽃이 나타나지 않았다.

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Actual distribution and present status of a threatened aquatic plant, Sagittaria aginashi (Alismataceae), in Korea

  • Shiga, Takashi;Tsubota, Kazumasa;Choi, Hyeok Jae
    • Korean Journal of Plant Taxonomy
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    • v.47 no.3
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    • pp.180-188
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    • 2017
  • We evaluated the actual distribution, present status, and number of remnant individuals of Korean Sagittaria aginashi (Alismataceae) based on herbarium specimens and field surveys. We also reidentified Korean S. aginashi by analyzing sequences of the internal transcribed spacer (ITS) region. We found nine specimens of S. aginashi in herbaria from four localities housed at the Osaka Museum of Natural History (OSA) and at the Korea National Herbarium (KH). During our field research, we could not confirm the current statuses of two collection localities (Taereung and Ansan-si), though this was not the case for Ulsan-si. In addition, we found two new localities in Ulsan-si and Yangsan-si. These three remnant populations are distributed in wetlands in mountainous areas (elev. 480-740 m). With regard to the number of flowering and immature individuals in the three localities, there were <50 and <2,000, respectively, in total. ITS sequences demonstrated that the sequences of Korean and Japanese S. aginashi are uniform and distinct from other Sagittaria species. These results indicate that S. aginashi is a rare and threatened species in Korea. It should be listed as an endangered species on the Korean Red List and requires urgent protection by conservation programs, including the extensive surveys of other possible natural habitats.

Machine Learning SNP for Classification of Korean Abalone Species (Genus Haliotis) (전복류(Genus Haliotis)의 분류를 위한 단일염기변이 기반 기계학습분석)

  • Noh, Eun Soo;Kim, Ju-Won;Kim, Dong-Gyun
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.54 no.4
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    • pp.489-497
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    • 2021
  • Climate change is affecting the evolutionary trajectories of individual species and ecological communities, partly through the creation of new species groups. As population shift geographically and temporally as a result of climate change, reproductive interactions between previously isolated species are inevitable and it could potentially lead to invasion, speciation, or even extinction. Four species of abalone, genus Haliotis are present along the Korean coastline and these species are important for commercial and fisheries resources management. In this study, genetic markers for fisheries resources management were discovered based on genomic information, as part of the management of endemic species in response to climate change. Two thousand one hundred and sixty one single nucleotide polymorphisms (SNPs) were discovered using genotyping-by-sequencing (GBS) method. Forty-one SNPs were selected based on their features for species classification. Machine learning analysis using these SNPs makes it possible to differentiate four Haliotis species and hybrids. In conclusion, the proposed machine learning method has potentials for species classification of the genus Haliotis. Our results will provide valuable data for biodiversity conservation and management of abalone population in Korea.

Characteristics of Fermentation Solution in Prunus mume - Plant Genetic Resource of ex situ Conservation in Yesan - (매실나무 열매의 발효액 특성 - 예산지역 이식의 현지외보전 식물자원 -)

  • Kang, Hee Kyoung;Kang, Hye Rin;Kim, Ji Young;Song, Hong Seon
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2019.04a
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    • pp.49-49
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    • 2019
  • 본 연구는 대한민국 매실나무 열매의 특성평가를 위하여 청매실의 무게를 대, 중, 소로 구분하여 발효액의 수율, 당도, 산도 및 당산비를 조사하였고, 청매실과 황매실의 발효액 특성을 비교하였다. 발효액의 수율은 82~132%의 범위로 매우 넓었으며, 대 > 중 > 소의 순으로 적은 경향을 보였다. 당도는 55.4~59.1%의 범위이었으며, 무게에 따른 차이는 나타나지 않았다. 산도는 1.73~2.71%의 범위이었으며, 무게에 따른 차이는 나타나지 않았다. 당산비는 20.6~31.3의 범위로 매우 크게 나타나 자원의 다양한 특성이 존재함을 나타내었으며, 무게에 따른 차이는 나타나지 않았다. 무게에 따른 발효액 수율, 당도, 산도 및 당산비는 처리간 차이를 나타내지 않았으나 전체적인 자원간에는 큰 차이를 나타내어 다양하였다. 발효액의 변이계수는 당산비 > 산도 > 당도 > 수율의 순이었다. 청매실과 황매실의 발효액은 수율의 경우 황매실이 높았고, 당도와 산도는 청매실이 높았으며, 당산비는 차이가 없었다.

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Effect of Plant Growth Regulators in In Vitro Culture of Hippophae rhamnoides

  • Lee, Songhee;Cho, Wonwoo;Jang, Hyeonsoo;Chandra, Romika;Lee, Sora;Kang, Hoduck
    • Journal of Forest and Environmental Science
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    • v.37 no.2
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    • pp.148-153
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    • 2021
  • This study was carried out to establish in vitro propagation system influenced by plant growth regulators through organogenesis with three different seed sources (China, Mongolia and Russia) for conservation of genetic resources in Northeast Asia. The experiment compared two different carbon sources (commercial sugar, sucrose), which showed no significant differences in germination rate. Induced adventitious buds from leaf segments were found to be highly effective when supplemented with 1.0 mg/L BA, 1.0 mg/L Kinetin, and 5.0 mg/L IAA, in the case of Chinese origin 96.8%, Russian origin R-1: 95.6%, R-2: 85.6%, and Mongolian origin M-2: 77.8%. It was effective in BA and Kinetin with supplemented with IAA, respectively. Shooting development was also efficient in Woody Plant Media (WPM) supplemented with 1.0 mg/L BA, 1.0 mg/L Kinetin and 5.0 mg/L IAA.

A report of the second chloroplast genome sequence in Veronica nakaiana (Plantaginaceae), an endemic species in Korea

  • LEE, Yae-Eun;LEE, Yoonkyung;KIM, Sangtae
    • Korean Journal of Plant Taxonomy
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    • v.51 no.1
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    • pp.109-114
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    • 2021
  • Veronica nakaiana Ohwi (Plantaginaceae) is an endemic taxon on Ulleungdo Island, Korea. We report the second complete chloroplast genome sequence of V. nakaiana. Its genome size is 152,319 bp in length, comprising a large single-copy of 83,195 bp, a small single-copy of 17,702 bp, and a pair of inverted repeat regions of 25,711 bp. The complete genome contains 115 genes, including 51 protein-coding genes, four rRNA genes, and 31 tRNA genes. When comparing the two chloroplast genomes of V. nakaiana, 11 variable sites are recognized: seven SNPs and four indels. Two substitutions in the coding regions are recognized: rpoC2 (synonymous substitution) and rpl22 (nonsynonymous substitution). In nine noncoding regions, one is in the tRNA gene (trnK-UUU), one is in the intron of atpF, and seven are in the intergenic spacers (trnH-GUG~psbA, trnK-UUU, rps16~trnQ-UUG, trnC-GCA~petN, psbZ~trnG-GCC, ycf3~trnS-GGA, ycf4~cemA, and psbB~psbT). The data provide the level of genetic variation in V. nakaiana. This result will be a useful resource to formulate conservation strategies for V. nakaiana, which is a rare endemic species in Korea.

Conditions for Reintroduction of Captive-Bred Endangered Birds: A Review

  • Kim, Sooil;Park, Heonwoo;Cheong, Seokwan
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • v.3 no.3
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    • pp.129-138
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    • 2022
  • Reintroduction programs have been promoted across the world to recover and rehabilitate endangered birds through ex situ captive breeding and releasing to the nature. The ultimate aims of these reintroduction programs are recovery of sustainable populations in natural habitats. To ensure the success of the reintroduction programs, it is necessary to examine the followings in order to increase the success rate of releasing along with the development of captive breeding techniques: 1) Adequate habitat provision, 2) adaptability of captive-bred individuals, 3) survivability of released individuals, and 4) social interest and will. Before releasing captive-bred individuals, it should be reviewed whether there are habitats in which the limiting factor is removed, and assessed their long-term safety. The quantity and quality of the released individuals must be considered to increase the chances for mate selection, maintain genetic diversity, and acquire the ability to adapt to the wild. The release method must be decided in consideration of characteristics of the target habitats and individuals, and rational means such as careful observation, evaluation, and feedback must be provided throughout the release process. For the long-term success of recovery projects, social awareness, sustainable support, and related experts are needed. Satisfying these criteria can help to increase the success rates of reintroduction programs. For the bird reintroduction program in the future, the feasibility of the methods and procedures must be closely reviewed before starting.