• 한국전산구조공학회:학술대회논문집
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• 한국전산구조공학회 2008년도 정기 학술대회
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• pp.590-595
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• 2008

In the present paper, the impact damage behavior of steel plate reinforced concrete panels exposed to shock impulsive loading and fragment impact loading is investigated. To evaluate the retrofit performance of a steel-strengthened concrete panels, a numerical experiment using a numerical simulation with AUTODYN, an explicit analysis program is introduced because a real explosion experiment requires the vast investment and expense for facilities as well as the deformation mechanisms are too complicated to be reproduced with a conventional closed-form analyses. The model for the analysis is simplified and idealized as a two-dimensional and axisymmetric case controled with geometry, boundary condition and material properties in order to obtain a resonable computation time. As a result of the analysis, panels subject to either shock loading or fragment loading without the steel plate reinforcement experience the perforation with spalled fragments. In addition, the panels reinforced with steel plate can prevent the perforation and provide the good mechanical effect such as the increase of global stiffness and strength through the composite action between the concrete slab and the steel plate.

• Fisheries and Aquatic Sciences
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• 제27권3호
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• pp.159-170
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• 2024

Research to obtain molecular markers related to the major histocompatibility complex (MHC) gene in both strains of gourami is essential to increase the success of the selection program of disease resistance traits. Using a completely randomized design (CRD), the challenge test consists of four treatments and seven replications. The treatment was Jambi gourami injected with PBS (KJ), Kalimantan gourami injected with PBS (KK), Jambi strain injected with Aeromonas hydrophila (GJ), and Kalimantan strain injected with A. hydrophila (GK). The GJ population was more resistant to A. hydrophila than the GK population. The MHC II gene was detected in both test strains (GJ and GK), both resistant and susceptible fish. However, there were differences in the results of amplifying the MHC II gene in susceptible and resistant fish. Two DNA fragments approximately 400 and 585 bp were detected in the genome of susceptible fish, while in the genome of susceptible fish, only one DNA fragment was detected (400 bp). Therefore, the MHC II gene fragment with a size of about 585 bp can be used as a potential candidate for specific molecular markers to obtain resistance to A. hydrophila bacteria in the giant gourami.

• 한국식물병리학회:학술대회논문집
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• 한국식물병리학회 2003년도 정기총회 및 추계학술발표회
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• pp.130-130
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• 2003

Gummy stem blight pathogen is very difficult not only to monitor the inoculum levels prior to host infection, and also it is destructive and hard to control in field condition. We have applied RAPD technique to elucidate the genetic diversity of the genomic DNA of Didymella bryoniae and also to generate specific diagnostic DNA probe useful for identification and detection. The 40 primers produced clear bands consistently from the genomic DNA of twenty isolates of Didymella bryoniae, and two hundred seventy-three amplified fragments were produced with 40 primers. The combined data from 273 bands was analyzed by a cluster analysis using UPGMA method with an arithmetic average program of NTSYS-PC (Version 1.80) to generate a dendrogram. At the distance level of 0.7, two major RAPD groups were differentiated among 20 strains. RAPD group (RG) I included 8 isolates from watermelon except one isolate from melon. RAPD group (RG) IV included 12 isolates from squash, cucumber, watermelon and melon.. In amplification experiment with SCAR specific primer RG1F-RG1R resulted in a single band of 650bp fragment only for 8 isolates out of 20 isolates that should be designated as RAPD Group 1. However, same set of experiment done with RGIIF-RGIIR did not result in any amplified product.. Our attempts to detect intraspecific diversity of ITS region of rDNA by amplifying ITS region and 17s rDNA region for 20 isolates and restriction digestion of amplified fragment with 12 enzymes did not reveal polymorphic band. In order to develop RAPD markers for RGIV specific primer, a candidate PCR fragment( ≒1.4kb) was purified and Southern hybridized to the amplified fragment RGIV isolates. This promising candidate probe recognized only RGIV isolates

• Bioinformatics and Biosystems
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• 제1권1호
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• pp.61-66
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• 2006

We propose a new fragment assembly program MLP (mate-based layout with PHRAP). MLP consists of PHRAP, repeat masking, and a new layout algorithm that uses the mate pair information. Our experimental results show that by using MLP instead of PHRAP, we can significantly reduce the difference between the assembled sequence and the original genome sequence.

• 한국정보통신학회논문지
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• 제10권12호
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• pp.2329-2334
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• 2006

본 논문에서는 기존의 conting 구성 프로그램의 단점인 단편들 간의 결합 실패를 보완하는 알고리즘을 제안하였다. 제안된 방법은 매우 긴 DNA의 염기 서열을 자동 서열 분석기로 한번에 분석 가능한 약 700개의 단편들을 한 주형으로 만들어 PCR 방법으로 클론 3을 생성 후, $600\sim700$개의 길이로 단편화하여 기준 주형과 비교하여 일치율을 계산한다. 이때 Compute Agreement 알고리즘을 이용하여 일치율을 계산하는 시간을 단축시킨다. 계산된 단편 쌍들의 중첩 정도를 기준으로 주형마다 2개의 결합 후보 단편을 추출하여 추출된 각 단편들의 일치율과 각 DNA 염기의 A,G,C,T 소속도 및 각 A,G,C,T 이 전 빈도수를 퍼지 추론 규칙을 이용하여 결합 여부를 판단한다. 본 논문에서는 결정된 최 적의 비교 단편을 결합하고, 더 이상 단편이 없을 때까지 반복하여 서열 결합을 완성한다. 실험을 위해 완성된 단백질 지놈인 'Synechocystis PCC6803'을 각각 1만개, 10만개씩 추출하여 $600{\sim}700$개의 길이를 가진 단편을 생성하였으며, 이 단편을 임 의의 mutation을 유발하여 실험한 결과, FAP 프로그램보다 속도가 줄어들었으며, conting 구성 프로그램의 단점 인 결합 실패가 발생하지 않았다.

• 대한토목학회논문집
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• 제31권1A호
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• pp.25-33
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• 2011

본 논문에서는 폭발에 의한 폭풍파 및 파편 충돌하중을 받는 강판보강 콘크리트 패널의 충돌손상거동 수치해석이 수행된다. 폭발로 인해 발생되는 순간 동역학적인 충돌손상 메커니즘은 매우 복잡하며, 이에 대한 실험적 연구 또한 막대한 비용과 시설이 요구되기 때문에 explicit 유한요소해석 프로그램인 AUTODYN을 이용하여 수치적 연구가 수행된다. 그러나, 단일의 수치해석기법을 적용하여 폭풍파 및 파편의 충돌에 의한 손상거동을 명확히 모사하기에는 한계가 있다. 따라서 수치해석의 정확성 및 효율성을 높이기 위해 Euler-Lagrange, SPH(smoothed particle hydrodynamics)-Lagrange 기법을 커플링하는 복합적 수치해석(multi-solver coupling) 기법이 제안된다. 제안된 해석기법과 2차원 축대칭 모델을 적용하여 강판보강 유무에 따른 콘크리트 패널의 충돌손상거동 해석이 수행된다. 수치해석 결과 무보강 콘크리트 패널의 경우, 파편 충돌에 의해 파쇄 및 관통이 발생되었고 강판보강 콘크리트 패널의 경우 강도 및 강성의 증가로 인해 관통이 발생되지 않았고 최대처짐 및 파편억제효과가 나타났다. 해석결과는 기존의 실험결과와 비교하여 잘 일치되었고 제안된 복합적 수치해석 기법은 충돌손상에 대한 보강성능을 평가하는데 효과적으로 적용가능하다.

• The Plant Pathology Journal
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• 제22권1호
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• pp.36-45
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• 2006

Twenty isolates of Didymella bryoniae were isolated from infected cucurbit plants in various growing areas of southern Korea in 2001 and 2002. Random Amplified Polymorphic DNA (RAPD) group [RG] I of D. bryoniae was more virulent than RG IV to watermelon. Virulence of the RG I isolate was strong to moderate to cucumber, whereas that of the RG IV varied from strong, moderate to weak. Two hundred seventy-three amplified fragments were produced with 40 primers, and were analyzed by a cluster analysis using UPGMA method with an arithmetic average program of NTSYSPC. At the distance level of 0.7, two major genomic DNA RAPD groups were differentiated among 20 isolates. The RG I included 7 isolates from watermelon and one isolate from melon, whereas the RG IV included 12 isolates from squash, cucumber, watermelon and melon. Amplification of internal transcribed spacer (ITS) region and small subunit rRNA region from the 20 isolates yielded respectively a single fragment. Restriction pattern with 12 restriction enzymes was identical for all isolates tested, suggesting that variation in the ITS and small subunit within the D. bryoniae were low. Amplification of the genomic DNAs of the tested isolates with the sequence characterized amplified regions (SCAR) primer RG IF-RG IR specific for RG I group resulted in a single band of 650bp fragment for 8 isolates out of the 20 isolates. Therefore, these 8 isolates could be assigned into RG I. The same experiments done with RG IIF-RG IIR resulted in no amplified PCR product for the 20 isolates tested. An about 1.4 kb-fragment amplified from the RG IV isolates was specifically hybridized with PCR fragments amplified from genomic DNAs of the RG IV isolates only, suggesting that this PCR product could be used for discriminating the RG IV isolates from the RG I isolates as well other fungal species.

• 한국지반공학회지:지반
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• 제1권2호
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• pp.67-74
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• 1985

경계조건과 토층구성이 복잡한 confined flow system에서의 전수두 결정 방법을 random walk 이론을 응용하여 연구하였다. 토성의 불균질성 및 이방성, 그리고 널말뚝의 존재와 경사진 불투수층 조건 등을 고려하였다. 특정한 점의 전수두를 구하기 위하여 몬테카를로 방법으로 random walk를 진행시켰다. 전수두 결정 과정을 프로그램화 하고 계산결과를 조건이 간단한 경우에 대하여 종래의 방법들-즉 유선강, 유한차분법, fragment method-과 비교 검토하였다. 이러한 연구의 결과 이 방법이 특정한 수개의 점에서의 전수두 결정에 유용함을 알 수 있었다.

• 대한미생물학회지
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• 제34권6호
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• pp.561-571
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• 1999

Diagnosis of mycobacterial infection is dependent upon the isolation and identification of causative agents. The procedures involved are time consuming and technically demanding. To improve the laborious identification process mycobacterial systematics supported by gene analysis is feasible, being particularly useful for slowly growing or uncultivable mycobacteria. To complement genetic analysis for the differentiation and identification of mycobacterial species, an alternative marker gene, rpoB encoding the ${\beta}$ subunit of RNA polymerase, was investigated. rpoB DNAs (342 bp) were amplified from 52 reference strains of mycobacteria including Mycobacterium tuberculosis H37Rv (ATCC 27294) and clinical isolates by the PCR. The nucleotide sequences were directly determined (306 bp) and aligned using the multiple alignment algorithm in the MegAlign package (DNASTAR) and MEGA program. A phylogenetic tree was constructed with a neighborhood joining method. Comparative sequence analysis of rpoB DNA provided the basis for species differentiation. By being grouped into species-specific clusters with low sequence divergence among strains belonging to same species, all the clinical isolates could be easily identified. Furthermore RFLP analysis enabled rapid identification of clinical isolates.

• Journal of Microbiology and Biotechnology
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• 제23권1호
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• pp.69-75
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• 2013

Enrofloxacin is a fluoroquinolone antibiotic approved for the treatment of infections in animals. Because of the side effects to consumers of animal products, the maximum residue limits (MRLs) of enrofloxacin in animal tissues for consumption are regulated. In this study, a monoclonal antibody (mAb) against enrofloxacin was prepared and characterized for the development of a direct competitive enzyme-linked immunosorbent assay (ELISA). The obtained mAb, Enro44, was highly specific for enrofloxacin and had a 50% inhibition concentration ($IC_{50}$) of 1.99 ng/ml in a competitive ELISA, and the limit of detection (LOD) was 0.50 ng/ml. The cross-reactivity of the mAb with other quinolones and fluoroquinolones was lower than 0.01%. The subclass of the mAb Enro44 was identified as IgG1. The antigen (Ag)-captured direct competitive ELISA using the mAb Enro44 was tested on different spiked samples, including chicken muscle, cattle milk, and cattle urine, and the assay demonstrated recoveries of 82-112%, 80-125%, and 78-124%, respectively. Furthermore, the quantitation of enrofloxacin obtained from the ELISA and from high-performance liquid chromatography (HPLC) was in good agreement, with the linear regression coefficient between 0.933 and 1.056. The cDNAs encoding a heavy-chain Fd fragment (VH and CH1) and a light chain of the mAb Enro44 were cloned and sequenced. Taken together, the results obtained reveal a potential use of this mAb in an ELISA for the detection of enrofloxacin in food samples. The information of amino acid sequence of this mAb will be useful for further modification and production of the mAb in a bioreactor.