• 제목/요약/키워드: forest conservation

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Genomic Analysis of the Xanthoria elegans and Polyketide Synthase Gene Mining Based on the Whole Genome

  • Xiaolong Yuan;Yunqing Li;Ting Luo;Wei Bi;Jiaojun Yu;Yi Wang
    • Mycobiology
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    • v.51 no.1
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    • pp.36-48
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    • 2023
  • Xanthoria elegans is a lichen symbiosis, that inhabits extreme environments and can absorb UV-B. We reported the de novo sequencing and assembly of X. elegans genome. The whole genome was approximately 44.63 Mb, with a GC content of 40.69%. Genome assembly generated 207 scaffolds with an N50 length of 563,100 bp, N90 length of 122,672 bp. The genome comprised 9,581 genes, some encoded enzymes involved in the secondary metabolism such as terpene, polyketides. To further understand the UV-B absorbing and adaptability to extreme environments mechanisms of X. elegans, we searched the secondary metabolites genes and gene-cluster from the genome using genome-mining and bioinformatics analysis. The results revealed that 7 NR-PKSs, 12 HR-PKSs and 2 hybrid PKS-PKSs from X. elegans were isolated, they belong to Type I PKS (T1PKS) according to the domain architecture; phylogenetic analysis and BGCs comparison linked the putative products to two NR-PKSs and three HR-PKSs, the putative products of two NR-PKSs were emodin xanthrone (most likely parietin) and mycophelonic acid, the putative products of three HR-PKSs were soppilines, (+)-asperlin and macrolactone brefeldin A, respectively. 5 PKSs from X. elegans build a correlation between the SMs carbon skeleton and PKS genes based on the domain architecture, phylogenetic and BGC comparison. Although the function of 16 PKSs remains unclear, the findings emphasize that the genes from X. elegans represent an unexploited source of novel polyketide and utilization of lichen gene resources.

Conservation Status and Restoration of Evergreen Broad-leaved Forests in Warm Temperate Region, Korea( II ) -Restoration Planning of Vegetation in a Case Study Areas- (난온대 상록활엽수림 보전실태 및 복원(II) -사례지의 식생복원계획-)

  • 오구균;박석곤
    • Korean Journal of Environment and Ecology
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    • v.17 no.1
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    • pp.71-82
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    • 2003
  • To set out restoration plan of Evergreen Broad-Leaved Forests(EBLF), a case study was done at Wando arboretum, Sinjido and Jangdo(Island). Firstly, basic environmental survey was done and the degrade levels of EBLF was assessed. And the forest functions and restoration goal of vegetation have been established before considering and setting restoration types of vegetation and restoration techniques. Taking social demand and restoration goal etc. into consideration, the forest functions were classified into a ecosystem preservation, scenery conservation and timber production. Quercus acuta Forest, Castanopsis siebodii Forest, Persea thunbergii Forest, Cinnamomum japonicum Forest, Dendropanax morbifera Forest etc. were suggested as a restoration goal of vegetation. Restoration types of vegetation were classified into a preservation type, restoration type, reconstruction type and afforestation type. And restoration techniques were subdivided into a preservation, induction, improvement, and creation according to the degraded levels of EBLF.

Significance and Future Direction for Designation and Management of Landslide-Prone Zones (산사태 취약지역 지정·관리 제도의 의의와 향후 과제)

  • Kim, Suk Woo;Chun, Kun Woo;Kim, Kyoung Nam;Kim, Min Sik;Kim, Min Seok;Lee, Sang Ho;Seo, Jung Il
    • Journal of Forest and Environmental Science
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    • v.29 no.3
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    • pp.237-248
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    • 2013
  • The legal basis for the systematic prevention and response to landslide hazards, and the rehabilitation of landslide-hit areas, was established through the amendment of the Forest Protection Act in August 2012. The most noticeable amendment to the Act is the inclusion of clauses associated with the designation and management of landslide-prone zones (including debris flow-prone zones). In this paper, we (1) introduce the clauses related to the designation and management of landslide-prone zones that were included in the amended Forest Protection Act, (2) examine their significance by reviewing the present status of related domestic laws and structural countermeasures such as sediment check dams for sediment-related disaster prevention, and (3) suggest the future directions of the procedure for the designation and cancellation of such zones, and their maintenance and institutional aspects. The establishment of an institutional device for the designation and management of landslide-prone zones has great significance in the aspect of (1) the establishment of a comprehensive management and prevention system for potential landslide-prone zones in forested areas where the hazard risk has been poorly recognized as compared with the flood risks in lowlands, and (2) the establishment of the basis for overcoming the limits of structural countermeasures according to limited budgets. To develop the designation and management system for landslide-prone zones, not only must present problems be addressed, but a cooperation system between the administration and local residents must also be established.

Genetic Diversity and Population Genetic Structure of Cephalotaxus koreana in South Korea

  • Hong, Kyung Nak;Kim, Young Mi;Park, Yu Jin;Lee, Jei Wan
    • Korean Journal of Plant Resources
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    • v.27 no.6
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    • pp.660-670
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    • 2014
  • The Korean plum yew (Cephalotaxus koreana Nakai) is a shade-tolerant, coniferous shrub. The seeds have been used as a folk medicine in Korea, and an alkaloid extract (HTT) is known to have anticancer properties. We estimated the genetic diversity of 429 trees in 16 populations in South Korea using 194 polymorphic amplicons from seven combinations of AFLP primer-restriction enzymes. The average number of effective alleles and the percentage of polymorphic loci were 1.37 and 79.4%, respectively. Shannon's diversity index and the expected heterozygosity were 0.344 and 0.244, respectively. We divided 16 populations into four groups on the UPGMA dendrogram and the PCA biplot. The first two principal components explained 84% of the total genetic variation. Genetic differentiation between populations explained 14% of total genetic variation, and the remaining 86% came from difference between individuals within populations, as determined by an analysis of molecular variance (AMOVA). However, the genetic differentiation did not correlate with the geographic distance between populations from the Mantel test. The Bayesian statistics, which are comparable to Wright's $F_{ST}$ and Nei's $G_{ST}$, were ${\theta}^I=0.406$ and ${\theta}^{II}=0.172$, respectively. The population genetic diversity was slightly lower, and the strength of genetic differentiation was much weaker, than the average of those plants having similar life histories, as assessed using arbitrary marker systems. We discuss strategies for the genetic conservation of the plum yew in Korea.

Spreading Pattern of Evergreen Broad-leaved Trees in Forest Community adjacent to the Camellia japonica Stands (동백나무림 주변 산림군집에서 상록활엽수의 확산패턴)

  • Chung, Jae-Min;Jung, Hyu-Ran;Moon, Hyun-Shik
    • Journal of agriculture & life science
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    • v.45 no.6
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    • pp.89-94
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    • 2011
  • In this study, the amount of seedlings and seed dispersal of evergreen broad-leaved trees in forest community adjacent to Camellia japonica forest were studied to provide basic information for effective management of evergreen broad-leaved forest. Evergreen broad-leaved trees including C. japonica, Neolitsea sericea, Machilus thunbergii, Ligustrum japonicum, Cinnamomum japonicum, Litsea japonica, Pittosporum tobira showed high density and ratio of seedlings in community adjacent to C. japonica forest. Although individual densities of N. sericea, M. thunbergii, L. japonicum were low, their seedlings were distributed up to Pinus thunbergii and coniferous broad-leaved forest at a distance of 100m and 200m from C. japonica forest. Distribution of DBH class of C. japonica suggested a continuous spread from higher frequency of young individuals, N. sericea, M. thunbergii and L. japonicum did not showed an obvious trend. Seed of C. japonica mainly dispersed within 50m from mother tree.

Species diversity, relative abundance, and decline of flying insects in a fragmented forest in Futa Akure, Ondo State, Nigeria

  • Temitope A. Olatoye;Ohseok, Kwon;Kayode L. Akinwande
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • v.5 no.1
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    • pp.10-20
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    • 2024
  • The study investigated species diversity, relative abundance, and decline of flying insects and plants within a fragmented forest in the Federal University of Technology Akure (FUTA), Ondo State, Nigeria. It is known that habitat fragmentation can reduce biodiversity. Thus, it is important to perform comprehensive assessments to understand implications of the habitat fragmentation for flora and fauna. Species richness and abundance of flying insects and plants across fragmented forest patches were quantified using field surveys and taxonomic identification. This study revealed shifts in species diversity, with fragmented areas exhibiting reduced biodiversity compared to contiguous forest ecosystems. Flying insects crucial for ecosystem functioning and pollination services demonstrated decreased species richness and relative abundance within fragmented habitats. This decline was attributed to habitat loss, altered microclimates, and limited movement pathways known to hinder insect dispersal. Similarly, plant species richness and abundance showed decline in fragmented forest due to disrupted mutualistic interactions with pollinators, altered nutrient cycling, and increased competition among plant species. This study underscores the importance of maintaining intact forest habitats to sustain healthy ecosystems and preserve biodiversity. Effective conservation strategies should focus on habitat connectivity, reforestation efforts, and protection of essential ecological corridors to mitigate effects of fragmentation. In conclusion, this investigation provides empirical evidence for effects of habitat fragmentation on flying insects and plants in a forest ecosystem in FUTA Akure, Nigeria. Findings emphasize an urgency of adopting conservation measures to safeguard these invaluable components of biodiversity and ecosystem stability in the face of ongoing habitat loss and fragmentation.

Structurization in Community Composition and Diversity Pattern of Soil Seed Banks in Gwangneung Forest, South Korea (한국 광릉숲 매토종자에서 군집 종조성 및 다양성 양상의 구조화)

  • Kim, Han-Gyeol;Oh, Seung-Hwan;Cho, Yong-Chan
    • Journal of Korean Society of Forest Science
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    • v.110 no.4
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    • pp.577-589
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    • 2021
  • Soil seed bank community contributes to the long-term conservation of plant diversity and vegetation dynamics, and their decreasing diversity and density with soil depth provide critical perspectives (deterministic and stochastic) for understanding the community disassembly process. We analyzed changes in species composition and diversity and structuring patterns by soil layer (top and bottom), including surface vegetation, in Gwangneung Forest, a mature forest with a vegetation climate in the temperate central part of the Korean Peninsula. From two layers of soil collected with a vertical difference of 10 cm, 934 specimens of 27 families, 40 genera, 44 species, three varieties, and 47 taxa, germinated. Although species diversity and germination density decreased in most comparative characteristics, including growth type, there was no statistical significance due to large deviations. Within-group variability of species composition was similar in the upper and lower soils, as was the decline pattern in co-occurred species (ζ-diversity) and change in species retention probability. The structuring process of the community composition in the two soil layers was fitted with an exponential correlation rather than a power function, demonstrating the dominance of the stochastic process. The pattern in diversity and species turnover according to soil depth in Gwangneung Forest was discovered to be structured by stochastic random events, such as seed vertical movement rather than interaction with trait characteristics.

Estimating Population Density of Leopard Cat (Prionailurus bengalensis) from Camera Traps in Maekdo Riparian Park, South Korea

  • Park, Heebok;Lim, Anya;Choi, Tae-Young;Lim, Sang-Jin;Park, Yung-Chul
    • Journal of Forest and Environmental Science
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    • v.33 no.3
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    • pp.239-242
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    • 2017
  • Although camera traps have been widely used to understand the abundance of wildlife in recent decades, the effort has been restricted to small sub-set of wildlife which can mark-and-recapture. The Random Encounter Model shows an alternative approach to estimate the absolute abundance from camera trap detection rate for any animals without the need for individual recognition. Our study aims to examine the feasibility and validity of the Random Encounter Model for the density estimation of endangered leopard cats (Prionailurus bengalensis) in Maekdo riparian park, Busan, South Korea. According to the model, the estimated leopard cat density was $1.76km^{-2}$ (CI 95%, 0.74-3.49), which indicated 2.46 leopard cats in $1.4km^2$ of our study area. This estimate was not statistically different from the previous leopard cat population count ($2.33{\pm}0.58$) in the same area. As follows, our research demonstrated the application and usefulness of the Random Encounter Model in density estimation of unmarked wildlife which helps to manage and protect the target species with a better understanding of their status.