• Title/Summary/Keyword: e-matrix

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A review of drug knowledge discovery using BioNLP and tensor or matrix decomposition

  • Gachloo, Mina;Wang, Yuxing;Xia, Jingbo
    • Genomics & Informatics
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    • v.17 no.2
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    • pp.18.1-18.10
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    • 2019
  • Prediction of the relations among drug and other molecular or social entities is the main knowledge discovery pattern for the purpose of drug-related knowledge discovery. Computational approaches have combined the information from different sources and levels for drug-related knowledge discovery, which provides a sophisticated comprehension of the relationship among drugs, targets, diseases, and targeted genes, at the molecular level, or relationships among drugs, usage, side effect, safety, and user preference, at a social level. In this research, previous work from the BioNLP community and matrix or matrix decomposition was reviewed, compared, and concluded, and eventually, the BioNLP open-shared task was introduced as a promising case study representing this area.

A VARIANT OF D'ALEMBERT'S AND WILSON'S FUNCTIONAL EQUATIONS FOR MATRIX VALUED FUNCTIONS

  • Abdellatif Chahbi;Mohamed Chakiri;Elhoucien Elqorachi
    • Communications of the Korean Mathematical Society
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    • v.39 no.3
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    • pp.785-802
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    • 2024
  • Given M a monoid with a neutral element e. We show that the solutions of d'Alembert's functional equation for n × n matrices Φ(pr, qs) + Φ(sp, rq) = 2Φ(r, s)Φ(p, q), p, q, r, s ∈ M are abelian. Furthermore, we prove under additional assumption that the solutions of the n-dimensional mixed vector-matrix Wilson's functional equation $$\begin{cases}f(pr, qs) + f(sp, rq) = 2\phi(r, s)f(p, q),\\Φ(p, q) = \phi(q, p),{\quad}p, q, r, s {\in} M\end{cases}$$ are abelian. As an application we solve the first functional equation on groups for the particular case of n = 3.

The Development of the Integrated Nursing Practicum Education Matrix based on Learning Outcomes (학습성과기반 단계적 통합간호실습교육 매트릭스 개발)

  • Lee, JuHee;Lee, Taewha;Lee, Hyunkyeong;Kim, Sanghee;Bae, Juyeon;Han, Jeehee;Lee, Kyongeun
    • The Journal of Korean Academic Society of Nursing Education
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    • v.21 no.4
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    • pp.528-539
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    • 2015
  • Purpose: The purpose of this study was to develop an integrated nursing practicum education matrix based on the learning outcomes of each stage. Methods: In this Delphi technique study, 10 experts, consisting of six professors and four nurses, participated in the development of the matrix. The first step was an in-depth review for the composition of the questionnaire and the second step was the Delphi technique. The Delphi survey was conducted two times in order to complete the components of the matrix. The survey data was analyzed for statistical averages and standard deviations to decide the order of priority. Results: According to each stage (i.e. fundamental stage, competent stage, and proficient stage), the matrix was composed of education contents, methods, evaluation methods, and curriculum outcomes. Conclusion: The integrated nursing practicum education matrix of Y University was completed. The developed matrix will result in a reduction in the gap between nursing education and clinical practice and an improvement in nursing competency.

Expression of Matrix Metalloproteinase-2, Cathepsin D and E-cadherin in Human Gastric Adenocarcinomas (위선암에서 Matrix Metalloproteinase-2, Cathepsin D 및 E-cadherin의 발현)

  • Lee Sang Kuon;Park Seung Cheol;Kim Won Woo;Kim Wook;Lee Kyo Young;Jeon Hae Myung;Kim Eung Kook;Koh Yong Bok
    • Journal of Gastric Cancer
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    • v.2 no.3
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    • pp.151-156
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    • 2002
  • Purpose: The prognosis of gastric cancer depends on the depth of invasion, lymph-node metastasis, invasion to adjacent tissues, and distant metastasis. Recently, it is known that tumor-associated proteases and adhesion molecules have been shown to play a relevant role in the process of progression and metastasis. The purpose of our study was to demonstrate the value of MMP-2 (matrix metalloproteinase), cathepsin D and E-cadherin as prognostic factors. Materials and Methods: In this study, formalin-fixed, paraffin-embedded tissue blocks from 69 patients with gastric cancer were immunohistochemically studied using antibodies to MMP-2, cathepsin D, and E-cadherin, and their expressions were analyzed according to the pathologic stage, lymph-node metastasis, histological differentiation, and patient survival. The medical records of these patients were retrospectively reviewed. Results: Increased expression of MMP-2 significantly correlated with advanced pathologic stage (P=0.026). Patients with lymph-node metastasis also had increased expression of MMP-2. Those patients with increased expression of MMP-2 showed a poorer survival; nevertheless, it was not statistically significant. Increased expression of cathepsin D significantly correlated with advanced pathologic stage (p=0.029). However, no correlation was observed between advanced pathologic stage and either lymph-node status or histological differentiation. Patients with increased expression of cathepsin D had a poorer survival, but that result was not statistically significant. No association was found between reduced expression of E-cadherin and pathologic stage, lymph-node status, or histological differentiation. Also, no correlation was found between the expression of E-cadherin and survival. In addition, when a combination of MMP-2 and cathepsin D expressions was analyzed, if both were negative, the survival seems to be longer, but it was not statistically significant. Conclusions: In patients with gastric cancer, expressions of MMP-2 and cathepsin D correlated with tumor stage; therefore, they may be considered as prognostic factors.

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Lactoferrin Constitutively Enhances Differentiation of Osteoblastic MC3T3-E1 Cells in Vitro

  • Yang, Hee-Young;Lee, Ha-Mi;Park, Byung-Ju;Lee, Tae-Hoon
    • International Journal of Oral Biology
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    • v.39 no.3
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    • pp.145-151
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    • 2014
  • During bone remodeling, there is requirement of differentiation of osteoblastic cells. Previously, we identified proteins differentially expressed in soft tissue during bone healing. Of these proteins, we focused the effect of LTF on differentiation of osteoblast. In order to analyze the osteogenic ability of LTF, we treated conditioned media collected from human LTF-stably transfected HEK293T cells into osteoblastic MC3T3-E1. The results showed that the activity and expression of alkaline phosphatase were increased in MC3T3-E1 cells treated with conditioned media containing LTF in dose- and time-dependent manner. At the same time, we observed the significant increase of the expression of osteoblastic genes, such as ALP, BSP, COL1A1, and OCN, and along with matrix mineralization genes, such as DMP1 and DMP2, in LTF conditioned media-treated groups. Moreover, the result of treating recombinant human LTF directly into osteoblastic MC3T3-E1 showed the same pattern of treating conditioned media containing LTF. Our study demonstrated that LTF constitutively enhances osteoblastic differentiation via induction of osteoblastic genes and activation of matrix mineralization in MC3T3-E1 cells.

Recommender System based on Product Taxonomy and User's Tendency (상품구조 및 사용자 경향성에 기반한 추천 시스템)

  • Lim, Heonsang;Kim, Yong Soo
    • Journal of Korean Society of Industrial and Systems Engineering
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    • v.36 no.2
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    • pp.74-80
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    • 2013
  • In this study, a novel and flexible recommender system was developed, based on product taxonomy and usage patterns of users. The proposed system consists of the following four steps : (i) estimation of the product-preference matrix, (ii) construction of the product-preference matrix, (iii) estimation of the popularity and similarity levels for sought-after products, and (iv) recommendation of a products for the user. The product-preference matrix for each user is estimated through a linear combination of clicks, basket placements, and purchase statuses. Then the preference matrix of a particular genre is constructed by computing the ratios of the number of clicks, basket placements, and purchases of a product with respect to the total. The popularity and similarity levels of a user's clicked product are estimated with an entropy index. Based on this information, collaborative and content-based filtering is used to recommend a product to the user. To assess the effectiveness of the proposed approach, an empirical study was conducted by constructing an experimental e-commerce site. Our results clearly showed that the proposed hybrid method is superior to conventional methods.

Matrix-Assisted Variable Wavelength Laser Desorption Ionization of Peptides; Influence of the Matrix Absorption Coefficient on Expansion Cooling

  • Ahn, Sung-Hee;Bae, Yong-Jin;Kim, Myung-Soo
    • Bulletin of the Korean Chemical Society
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    • v.33 no.9
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    • pp.2955-2960
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    • 2012
  • Product ion yields in the in- and post-source decays of three peptide ions, $[Y_5X+H]^+$ (X = Y (tyrosine), K (lysine), and R (arginine)), generated by matrix-assisted laser desorption ionization (MALDI) were measured at six wavelengths, 307, 317, 327, 337, 347, and 357 nm, using ${\alpha}$-cyano-4-hydroxycinnamic acid (CHCA) and 2,5-dihydroxybenzoic acid (DHB) as the matrices. The temperatures of the early and late plumes generated by MALDI were estimated via kinetic analysis of the product ion yield data. For both matrices, the temperature drop (${\Delta}T$), i.e. the difference in the temperature between the early and late plumes, displayed negative correlation with the absorption coefficient. This was in agreement with the previous reasoning that deeper laser penetration and larger amount of material ablation arising from smaller absorption coefficient would result in larger extent of expansion cooling. The results support the postulation of the expansion cooling occurring in the plume presented previously.

Mixed matrix membranes of poly(vinyl alcohol) loaded with phosphomolybdic heteropolyacid for the pervaporation separation of water-isopropanol mixtures (Water-IsopropanoI 혼합물의 투과증발 분리를 위한 poly(vinyl alcohol)-phosphomoIybdic heteropolyacid 혼합막)

  • Teli, Shivanand;Choi, Hyoung-Woo;Moon, Jung-Me;Park, Ji-Hye;Hong, Sung-Pyo;Tak, Tae-Moon
    • Proceedings of the Membrane Society of Korea Conference
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    • 2008.05a
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    • pp.51-57
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    • 2008
  • Mixed matrix membranes of poly(vinyl alcohol) (PVA), loaded with phosphomolybdic heteropolyacid (HPA) and crosslinked with glutaraldehyde have been prepared by the solution casting technique. Pervaporation (PV) experiments have been performed at $30^{\circ}C$ to separate water-isopropanol feed mixtures containing 10 to 40 wt.% of water. The membranes were characterized by DSC and DMTA to understand their thermal behavior and mechanical strength properties. At high content (i.e. 7 wt.% with respect to weight of PVA) of HPA, the mixed matrix membranes could extract water efficiently on the permeate side with a selectivity of 90,000 and a flux of 0.032 $kg/m^2h$ for 10 wt.% of water containing feed mixture (the lowest feed composition of water studied). Flux of the mixed matrix membranes decreased with increasing concentrations of HPA.

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Effect of Interfacial Debonding on the Material Properties of Brittle Matrix Composites (취성기지 복합재료의 물성치에 미치는 계면분리의 영향)

  • 염영진;진민철
    • Composites Research
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    • v.16 no.1
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    • pp.42-49
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    • 2003
  • Brittle matrix composites often have interfacial debonding between the fiber and matrix which may lead to strength and stiffness degradation. The effect of interfacial debonding and fiber volume fraction on the mechanical properties of composite material were studied by using finite element method. Firstly, the modelling of fiber and matrix constituting the composite material was simplified under some assumptions. Traction and displacement continuity conditions were imposed along the boundary of adjacent representative volume elements. In order to obtain the effective material properties of composite material, stiffness constants were inverted. Numerical values of longitudinal moduli in case of perfect bonding were compared with theoretical values obtained by rule of mixtures and yielded consistency. Material properties of composite with large debonding an81e were found to decrease even though the fiber volume fraction increased.

Dynamic analysis of deployable structures using independent displacement modes based on Moore-Penrose generalized inverse matrix

  • Xiang, Ping;Wu, Minger;Zhou, Rui Q.
    • Structural Engineering and Mechanics
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    • v.54 no.6
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    • pp.1153-1174
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    • 2015
  • Deployable structures have gained more and more applications in space and civil structures, while it takes a large amount of computational resources to analyze this kind of multibody systems using common analysis methods. This paper presents a new approach for dynamic analysis of multibody systems consisting of both rigid bars and arbitrarily shaped rigid bodies. The bars and rigid bodies are connected through their nodes by ideal pin joints, which are usually fundamental components of deployable structures. Utilizing the Moore-Penrose generalized inverse matrix, equations of motion and constraint equations of the bars and rigid bodies are formulated with nodal Cartesian coordinates as unknowns. Based on the constraint equations, the nodal displacements are expressed as linear combination of the independent modes of the rigid body displacements, i.e., the null space orthogonal basis of the constraint matrix. The proposed method has less unknowns and a simple formulation compared with common multibody dynamic methods. An analysis program for the proposed method is developed, and its validity and efficiency are investigated by analyses of several representative numerical examples, where good accuracy and efficiency are demonstrated through comparison with commercial software package ADAMS.