• 제목/요약/키워드: cytochrome oxidase subunit I

검색결과 211건 처리시간 0.034초

고등어과 물치다래속(Auxis, Scombridae) 자어의 분자동정 및 형태발달 (Molecular Identification and Morphological Development of Auxis (Scombridae) Larvae)

  • 지환성;유준택;유정화;김진구
    • 한국수산과학회지
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    • 제44권6호
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    • pp.677-683
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    • 2011
  • Eleven individual larvae (3.6-8.0 mm notochord length, NL) were collected from the southern East Sea of Korea in July, 2010, and the adjacent Sea of Jeju Island in August, 2011. Five individuals were identified using mitochondrial DNA cytochrome oxidase subunit I (COI) sequences (494 base pairs). All were identified as Auxis rochei, their mtCOI sequences being consistent with those of adult A. rochei (d=0.000), followed by Auxis thazard (d=0.027). In terms of morphology, A. rochei larvae showed a preflexion stage of 4.8 mm NL, but a flexion stage between 5.2-6.2 mm NL, and subsequently a postflexion stage between 6.6-8.0 mm NL. During the larval stage, A. rochei differed from A. thazard in having no (or few) melanophores in the lateral caudal region.

Identification of Trichiurus (Pisces: Trichiuridae) Eggs and Larvae from Korea, with a Taxonomic Note

  • Lee, Soo Jeong;Kim, Jin-Koo
    • Fisheries and Aquatic Sciences
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    • 제17권1호
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    • pp.137-143
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    • 2014
  • The hairtail (currently recognized as Trichiurus lepturus in Korea) is one of the most important commercial fish species in Korea, Japan, China, and Taiwan. Because the amount of catches has been steadily declining, we must determine the early life stages of the hairtail from the viewpoint of resource management. Furthermore, the taxonomic status of the hairtail is unclear among ichthyologists, potentially creating management difficulties. Therefore, the purpose of this study was to compare morphological and molecular information on eggs, larvae, and adults of hairtail from Korea with that of T. lepturus from the Atlantic Ocean, and to review the taxonomic status of the hairtail. A total of 510 base pairs of the mitochondrial DNA cytochrome oxidase subunit I sequences of 12 eggs, 2 larvae, and 11 adults of the hairtail from the Korean waters clearly matched those of Trichiurus japonicus adults (d = 0.000-0.014) from the East China Sea rather than those of T. lepturus (d = 0.100-0.110) from the Atlantic Ocean. Our results also showed that larvae of the Korean hairtail are different than those in the Atlantic Ocean in having no melanophores along the ventral edge of the lower jaw. Therefore, our findings suggest that the hairtail in the Korean waters may not be T. lepturus, but T. japonicus.

한국산 전갱이과(Carangidae) 어류 1미기록종, Scomberoides tol (First Reliable Record of the Needle-scaled Queenfish, Scomberoides tol (Perciformes: Carangidae), from Korea)

  • 김경무;최승호;김진구
    • 한국수산과학회지
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    • 제51권4호
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    • pp.444-449
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    • 2018
  • Two specimens of Scomberoides tol (99.0 mm and 124.5 mm in total length), belonging to the family Carangidae, order Perciformes were collected from Korean waters using a gape net with wings and a hand net between 2014 and 2017. These specimens are characterized by having the origin of the soft-rayed portion of the dorsal fin just above the origin of the soft-rayed portion of the anal fin, dorsal spines not connected by fin membranes and posterior end of the maxilla and upper jaw not extending beyond the posterior margin of the eye. A comparison of mitochondrial DNA cytochrome c oxidase subunit I sequences indicated that these specimens matched Scomberoides tol (K2P distance, d = 0.002), but differed from other Scomberoides species (6.9-9.1%). This is the first reliable report of Scomberoides tol from Korea.

Nannophya koreana sp. nov.(Odonata: Libellulidae): A new dragonfly species previously recognized in Korea as the endangered pygmy dragonfly Nannophya pygmaea Rambur

  • Bae, Yeon Jae;Yum, Jin Hwa;Kim, Dong Gun;Suh, Kyong In;Kang, Ji Hyoun
    • Journal of Species Research
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    • 제9권1호
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    • pp.1-10
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    • 2020
  • A new dragonfly species, Nannophya koreana sp. nov., is described from Korea on the basis of morphology and mitochondrial cytochrome oxidase c subunit I (COI) gene sequences. Nannophya materials from Korea and other areas in Southeast Asia were compared. The new species was previously recognized in Korea as the endangered pygmy dragonfly Nannophya pygmaea Rambur, 1842, which is widely distributed in insular and peninsular Southeast Asia. However, male adults of the Nannophya population in Korea could be distinguished from other N. pygmaea populations by the presence of a thick, incomplete black stripe on the lateral synthorax that terminated at half-length (vs. continuous to wing base), light orange (vs. red) anal appendages, and 4-5 (vs. 2-3) black teeth on the ventral superior appendages. In addition, the body length of N. koreana was generally larger (1.2-1.4 times) than that of N. pygmaea, regardless of life stage. COI gene sequences from the two groups exhibited substantial genetic differences (>12%), thereby sufficiently substantiating their differentiation. The taxonomic status, distribution, and habitat of the new species are discussed.

Additional Records of the Hydrothermal Vent Scale Worm Branchinotogluma segonzaci (Polynoidae: Lepidonotopodinae) from the North Fiji Basin and Tonga Arc

  • Lee, Won-Kyung;Lee, Geon Hyeok;Ju, Se-Jong;Kim, Se-Joo
    • Animal Systematics, Evolution and Diversity
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    • 제37권4호
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    • pp.273-279
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    • 2021
  • Branchinotogluma segonzaci (Miura and Desbruyères, 1995) occurs in hydrothermal vent fields of the southwestern Pacific Ocean. We morphologically compared B. segonzaci from the North Fiji Basin with the original description from the Lau Basin and a subsequent study of specimens from the Manus Basin. The main characteristics of all B. segonzaci populations were similar having 21 segments, 10 pairs of elytra, cylindrical-shaped anterior lobes, and ventral papillae on segment 12 and ventral lamellae on segments 13-17 in males. However, the specimens from the North Fiji Basin had rounded to sub-renifrom elytra rather than oval in the original description. Additionally, we newly obtained 11 cytochrome oxidase subunit I (COI) DNA barcodes from the North Fiji Basin and Tonga Arc populations and compared them with known COI DNA barcodes of Branchinotogluma species. Thirteen sequences of B. segonzaci showed 0.0-1.07% intraspecific variation and formed two clades in the COI neighbor-joining tree, whereas the interspecific variation among Branchinotogluma species was 8.19-22.4%. The results of this study contribute to biogeographic studies of B. segonzaci and the evolution of polynoid scale worms in chemosynthesis-based ecosystems.

The phylogeographic history of amphitropical Callophyllis variegata (Florideophyceae, Rhodophyta) in the Pacific Ocean

  • Bringloe, Trevor T.;Macaya, Erasmo C.;Saunders, Gary W.
    • ALGAE
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    • 제34권2호
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    • pp.91-97
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    • 2019
  • Chilean species of marine macroalgae with amphitropical distributions oftentimes result from introductions out of the Northern Hemisphere. This possibility was investigated using haplotype data in an amphitropical red macroalgae present in Chile, Callophyllis variegata. Published sequence records from Canada and the United States were supplemented with new collections from Chile (April 2014-November 2015). Specimens of C. variegata were amplified for the 5′ end of the cytochrome c oxidase subunit I gene (COI-5P) and the full length nuclear internal transcribed spacer region. Haplotype networks and biogeographic distributions were used to infer whether C. variegata was introduced between hemispheres, and several population parameters were estimated using IMa2 analyses. C. variegata displayed a natural amphitropical distribution, with an isolation time of approximately 938 ka between hemispheres. It is hypothesized that contemporary populations of C. variegata were established from a refugial population during the late Pleistocene, and may have crossed the tropics via rafting on buoyant species of kelp or along deep-water refugia coincident with global cooling, representing a rare case of a non-human mediated amphitropical distribution.

First record of Brachaluteres ulvarum (Tetraodontiformes: Monacanthidae) from Jeju-do Island, southern Korea

  • Myoung, Se Hun;Park, Joo Myun;Lee, Hyo Jin;Jawad, Laith A.
    • Fisheries and Aquatic Sciences
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    • 제24권6호
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    • pp.228-234
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    • 2021
  • A single specimen (39.4 mm standard length) of Brachaluteres ulvarum, belonging to the family Monacanthidae has been recorded for the first time from Supseom, Jeju-do Island of southern Korea on 6 March 2021. This species was characterized by the presence of a small second dorsal spine present, the posterior end of pelvic without encasing scales, and numerous thin dark longitudinal lines on body. It was morphologically similar to the B. taylori, but distinguished by the ratio of the caudal peduncle to the head length (B. ulvarum, 2.5 to 3.7 times; B. taylori, 3.5 to 5.2 times). In addition, the former is well distinguished from the latter through mitochondrial cytochrome c oxidase subunit I (COI) sequences by genetic distances of range from 0.088 to 0.090. The new Korean name "Kko-ma-jwi-chi- sog" is proposed for the genus Brachaluteres, and "Kko-ma-jwi-chi" for the species B. ulvarum.

Phylogeography of Gloiopeltis furcata sensu lato (Gigartinales, Rhodophyta) provides the evidence of glacial refugia in Korea and Japan

  • Yang, Mi Yeon;Fujita, Daisuke;Kim, Myung Sook
    • ALGAE
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    • 제36권1호
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    • pp.13-24
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    • 2021
  • The present-day genetic structure of macroalgal species reflects both geographical history and oceanic circulation patterns as well as anthropogenic introduction across native ranges. To precisely understand the genetic diversity and how the factors shape the current population structure of Gloiopeltis furcata sensu lato, we determined the mitochondrial 5' end of cytochrome c oxidase subunit I (COI-5P) sequences for 677 individuals sampled from 67 sites spanning almost the entire distribution range in Korea and Japan. Results from the phylogenetic analysis and haplotype distribution revealed eleven distinct lineages within G. furcata s.l. along the Korea-Japan coastal areas and displayed divergent phylogeographic patterns among lineages. Despite the closely related lineages distributed in same habitats as high rocky intertidal zone, they display different phylogeographic patterns among lineages. The populations from the south of Korea-Japan harbored the highest genetic diversity and unique endemism in comparison with other populations in the distribution range. This could be the evidence of southern refugia for G. furcata s.l. in the Northwest (NW) Pacific and the recent migration from native to introduced region. The reason is that an exceptional distribution pattern was found high genetic diversity in Hakodate of Japan where is the northern location in the NW Pacific. Our results imply the contemporary influence on the distribution due to current circulation pattern and anthropogenic effects. These phylogeographic findings provide the important insight into cryptic species diversity and the detailed distribution pattern of Gloiopeltis in the NW Pacific.

Morphological Identification and Phylogenetic Analysis of Laelapin Mite Species (Acari: Mesostigmata: Laelapidae) from China

  • Yang, Huijuan;Yang, Zhihua;Dong, Wenge
    • Parasites, Hosts and Diseases
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    • 제60권4호
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    • pp.273-279
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    • 2022
  • Laelapinae mites are involved in transmission of microbial diseases between wildlife and humans, with an impact on public health. In this study, 5 mite members in the subfamily Laelapinae (laelapin mites; LM) were morphologically identified by light microscopy, and the phylogenetic relationship of LM was analyzed in combination with the sequence information of part of the LM cytochrome oxidase subunit I (cox1) gene. The morphological identification revealed that 5 mites belonged to the genera Laelaps and Haemolaelaps, respectively. Sequence analysis showed that the ratio of nonsynonymous mutation rate to synonymous mutation rate of LM was less than 1, indicating that the LM cox1 gene had undergone purifying selection. Phylogenetic analysis showed that the Laelapinae is a monophyletic group. The genera Haemolaelaps and Hyperlaelaps did not separated into distinct clades but clustered together with species of the genus Laelaps. Our morphological and molecular analyses to describe the phylogenetic relationships among different genera and species of Laelapinae provide a reference for the improvement and revision of the LM taxonomy system.

봄철 제주 남부해역 난·자치어의 수직 분포 (Vertical Distribution of Icthyoplankton in the Southern Waters of Jeju Island During Spring)

  • 이보람;지환성;유효재;황강석;김두남
    • 한국수산과학회지
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    • 제55권2호
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    • pp.146-153
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    • 2022
  • The vertical distribution and abundance of icthyoplankton in the southern waters of Jeju Island during June 2020 were investigated. Fish eggs and larvae were identified using the mitochondrial DNA cytochrome c oxidase subunit I (mtDNA COI) and the 16S rRNA gene. During this period, fish eggs of 23 taxa belonging to 21 families and larvae of 27 taxa belonging to 25 families were collected. Fish eggs were located mostly from the surface to 30 m depth of the water column. Larvae were located from the surface to 80 m depth of the water column. Vertical distributions of fish eggs and larvae were influenced by oceanography conditions such as temperature, salinity, and thermocline depth. No discernible difference in mean thermocline depth was observed between day and night.