• 제목/요약/키워드: cytochrome C oxidase subunit I

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A New Record of Phyllidia varicosa (Nudibranchia: Phyllidiidae) from Korea

  • Dae-Wui Jung;Chang-Bae Kim
    • Animal Systematics, Evolution and Diversity
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    • 제39권4호
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    • pp.284-288
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    • 2023
  • In this article, a phyllidiid nudibranch which is distributed widely in the Indo-Pacific region, Phyllidia varicose Lamarck, 1801, is reported based on a specimen collected from Seopseom Islet, Jeju Island, Korea. This species is characterized by bluish-gray dorsal tubercles with a yellow cap and three distinct ridges consisting of dorsal tubercles going from the anterior to posterior region, the presence of bluish-black pigment between the dorsal ridges, and a characteristic black longitudinal stripe along the midline of the sole. In this study, we provide a key to species belonging to the genus Phyllidia discovered in Korea, the morphological descriptions, photographs, and a sequence of partial mitochondrial cytochrome c oxidase subunit I of P. varicosa. Currently, four species of the genus Phyllidia have been reported to be present in Korea, including P. varicosa.

Three Seed Beetles (Coleoptera: Chrysomelidae: Bruchinae) New to South Korea, with DNA Barcoding Data

  • Hee-Wook Cho;Haechul Park;Soojeong Ahn;Oe Jung Kim;Kang-Rae Kim
    • Animal Systematics, Evolution and Diversity
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    • 제40권1호
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    • pp.108-111
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    • 2024
  • Three species of seed beetles, Acanthoscelides pallidipennis (Motschulsky, 1874), Bruchidius terrenus (Sharp, 1886), and Kytorhinus senilis Solsky, 1869, from South Korea are reported for the first time. These three species can be morphologically distinguished from other Korean bruchid species by the distinctive color pattern of the elytra, presence of subapical spines on hind femur, and exposed last three tergites of abdomen, respectively. In this study, partial sequences of mitochondrial cytochrome c oxidase subunit I from Korean specimens of these species were generated. In addition, host plants, distribution maps, and photographs of the dorsal habitus and live specimens of each species are also included.

DNA Barcoding of Koreanohadra kurodana (Gastropoda: Camaenidae)

  • Kang-San Kim;Jun-Sang Lee;Kuem Hee Jang
    • Animal Systematics, Evolution and Diversity
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    • 제40권4호
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    • pp.354-358
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    • 2024
  • The land snail, Koreanohadra kurodana (Pilsbry, 1926), is endemic to Korea and was collected from Pocheon, Pyeongchang, and Taebaek in South Korea. This study describes the mitochondrial cytochrome c oxidase subunit I gene (COI) and 16S ribosomal RNA(16S) sequences of K. kurodana, followed by an analysis of the genetic distance between the genus Koreanohadra and its congeners. As a result, intra-species variation was 0.2-3.7% in COI and 0.3-4.0% in 16S. In the gene sequences of K. koreana recently reported by Japanese researchers, both COI and 16S sequences were observed to be located within the intra-species variation of K. kurodana (1.5-3.5% in COI; 0.6-4.0% in 16S). The inter-generic variation between genera Karaftohelix and Koreanohadra, closely related, was 11.8-26% and 6.2-18.7% in COI and 16S, respectively.

Molecular Identification of Diphyllobothrium nihonkaiense from 3 Human Cases in Heilongjiang Province with a Brief Literature Review in China

  • Zhang, Weizhe;Che, Fei;Tian, Song;Shu, Jing;Zhang, Xiaoli
    • Parasites, Hosts and Diseases
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    • 제53권6호
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    • pp.683-688
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    • 2015
  • Human diphyllobothriasis is a widespread fish-borne zoonosis caused by the infection with broad tapeworms belonging to the genus Diphyllobothrium. In mainland China, so far 20 human cases of Diphyllobothrium infections have been reported, and the etiologic species were identified as D. latum and D. nihonkaiense based on morphological characteristics or molecular analysis. In the present study, proglottids of diphyllobothriid tapeworms from 3 human cases that occurred in Heilongjiang Province, China were identified as D. nihonkaiense by sequencing mitochondrial cytochrome c oxidase subunit I (cox1) and NADH dehydrogenase subunit 5 (nad5) genes. Two different cox1 gene sequences were obtained. One sequence showed 100% homology with those from humans in Japan. The remaining cox1 gene sequence and 2 different nad5 gene sequences obtained were not described previously, and might reflect endemic genetic characterizations. D. nihonkaiense might also be a major causative species of human diphyllobothriasis in China. Meanwhile, the finding of the first pediatric case of D. nihonkaiense infection in China suggests that infants infected with D. nihonkaiense should not be ignored.

Infection by a Filarial Nematode from the Family Onchocercidae in the Wild Bird Anas falcata

  • Kim, Young Ji;Jang, Jin Ho;Kim, Min Chan;Park, Young-Seok;Kim, Hye Kwon
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • 제3권4호
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    • pp.221-226
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    • 2022
  • A filarial nematode was found in a blood sample of an Anas falcata individual collected in South Korea in 2018. Phylogenetic analysis based on partial cytochrome C oxidase subunit I (COI) sequences placed the nematode as a novel genus of the family Onchocercidae and as closely related to Mansonella species, Chandlerella quiscali, and filarial nematodes recently reported in avian species. However, different phylogenetic relationship was observed in the NADH dehydrogenase subunit 5 and 12S rRNA-based phylogenetic trees, which might indicate the filarial nematode found in this study was not defined to belong to the known specific genera of the family Onchocercidae. The screening of 105 additional avian blood samples retrieved only one 12S rRNA-targeting polymerase chain reaction (PCR)-positive sample, which indicates that filarial nematode infection is rare in wild birds or that it occurs below the detection limit of PCR in blood samples. Nevertheless, considering the recent findings about ancient interactions between birds and human pathogenic filarial nematodes and their pathogenic potential in several avian species, additional exploration of novel filarial nematodes in wild birds remains necessary.

Unveiling mesophotic diversity in Hawai'i: two new species in the genera Halopeltis and Leptofauchea (Rhodymeniales, Rhodophyta)

  • Erika A., Alvarado;Feresa P., Cabrera;Monica O., Paiano;James T., Fumo;Heather L., Spalding;Celia M., Smith;Jason C., Leonard;Keolohilani H., Lopes Jr.;Randall K., Kosaki;Alison R., Sherwood
    • ALGAE
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    • 제37권4호
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    • pp.249-264
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    • 2022
  • Two genera of the Rhodymeniales, Halopeltis and Leptofauchea, are here reported for the first time from the Hawaiian Islands and represent the deepest records for both genera. Molecular phylogenetic analyses of cytochrome oxidase subunit I (COI), rbcL, and large subunit ribosomal DNA (LSU) sequences for Hawaiian specimens of Leptofauchea revealed one well-supported clade of Hawaiian specimens and three additional lineages. One of these clades is described here as Leptofauchea huawelau sp. nov., and is thus far known only from mesophotic depths at Penguin Bank in the Main Hawaiian Islands. L. huawelau sp. nov. is up to 21 cm, and is the largest known species. An additional lineage identified in the LSU and rbcL analyses corresponds to the recently described L. lucida from Western Australia, and is a new record for Hawai'i. Hawaiian Halopeltis formed a well-supported clade along with H. adnata from Korea, the recently described H. tanakae from mesophotic depths in Japan, and H. willisii from North Carolina, and is here described as Halopeltis nuahilihilia sp. nov. H. nuahilihilia sp. nov. has a distinctive morphology of narrow vegetative axes that harbor constrictions along their length. The current distribution of H. nuahilihilia includes mesophotic depths around W. Maui, W. Moloka'i, and the island of Hawai'i in the Main Hawaiian Islands. Few reproductive characters were observed because of the small number of specimens available; however, both species are distinct based on phylogeny and morphology. These descriptions further emphasize the Hawaiian mesophotic zone as a location harboring many undescribed species of marine macroalgae.

Molecular Phylogenetics of Centrocestus formosanus (Digenea: Heterophyidae) Originated from Freshwater Fish from Chiang Mai Province, Thailand

  • Wongsawad, Chalobol;Wongsawad, Pheravut;Sukontason, Kom;Maneepitaksanti, Worawit;Nantarat, Nattawadee
    • Parasites, Hosts and Diseases
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    • 제55권1호
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    • pp.31-37
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    • 2017
  • This study aimed to investigate the morphology and reconstruct the phylogenetic relationships of Centrocestus formosanus originating from 5 species of freshwater fish, i.e., Esomus metallicus, Puntius brevis, Anabas testudineus, Parambassis siamensis, and Carassius auratus, in Chiang Mai province, Thailand. Sequence-related amplified polymorphism (SRAP) and phylogeny based on internal transcribed spacer 2 (ITS2) and mitochondrial cytochrome c oxidase subunit 1 (CO1) were performed. The results showed similar morphologies of adult C. formosanus from day 5 after infection in chicks. C. formosanus originated from 4 species of freshwater fish had the same number of circumoral spines on the oral sucker, except for those from C. auratus which revealed 34 circumoral spines. The phylogenetic tree obtained from SRAP profile and the combination of ITS2 and CO1 sequence showed similar results that were correlated with the number of circumoral spines in adult worms. Genetic variability of C. formosanus also occurred in different species of freshwater fish hosts. However, more details of adult worm morphologies and more sensitive genetic markers are needed to confirm the species validity of C. formosanus with 34 circumoral spines originating from C. auratus in the future.

한국산 흉상어과(Carcharhinidae) 어류 1미기록종, Carcharhinus obscurus (Lesueur, 1818) (First Reliable Record of the Dusky Shark Carcharhinus obscurus (Lesueur, 1818) (Carcharhinidae, Pisces) from Korea)

  • 이우준;김윤지;나정현;김진구
    • 한국수산과학회지
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    • 제52권6호
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    • pp.696-701
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    • 2019
  • Five specimens (839 - 1280 mm TL, Total length) of the dusky shark Carcharhinus obscurus, belonging to the family Carcharhinidae, were collected from the waters off Jejudo Island, Sinan, Namhae, Busan and Gangneung, Korea, during 2010-2019. Carcharhinus obscurus was similar to Carcharhinus brachyurus but was distinguished by the interdorsal ridge (present in C. obscurus vs. absent in C. brachyurus) and the shape of upper jaw teeth (broad in C. obscurus vs. narrow in C. brachyurus). In addition, 479 base-pair sequences in the mitochondrial DNA cytochrome c oxidase subunit I (COI) of our two specimens corresponded to those of C. obscurus (genetic distance, 0.000-0.003), but clearly distinguished from those of the Korean C. brachyurus (genetic distance, 0.03). We adopted the Korean name "Heuk-sang-eo" for Carcharhinus obscurus, after Kim and Ryu (2017).

The phylogeographic history of amphitropical Callophyllis variegata (Florideophyceae, Rhodophyta) in the Pacific Ocean

  • Bringloe, Trevor T.;Macaya, Erasmo C.;Saunders, Gary W.
    • ALGAE
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    • 제34권2호
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    • pp.91-97
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    • 2019
  • Chilean species of marine macroalgae with amphitropical distributions oftentimes result from introductions out of the Northern Hemisphere. This possibility was investigated using haplotype data in an amphitropical red macroalgae present in Chile, Callophyllis variegata. Published sequence records from Canada and the United States were supplemented with new collections from Chile (April 2014-November 2015). Specimens of C. variegata were amplified for the 5′ end of the cytochrome c oxidase subunit I gene (COI-5P) and the full length nuclear internal transcribed spacer region. Haplotype networks and biogeographic distributions were used to infer whether C. variegata was introduced between hemispheres, and several population parameters were estimated using IMa2 analyses. C. variegata displayed a natural amphitropical distribution, with an isolation time of approximately 938 ka between hemispheres. It is hypothesized that contemporary populations of C. variegata were established from a refugial population during the late Pleistocene, and may have crossed the tropics via rafting on buoyant species of kelp or along deep-water refugia coincident with global cooling, representing a rare case of a non-human mediated amphitropical distribution.

Construction of the Full-length cDNA Library and Selection of Diapause-Associated cDNA Clones from Bombyx mori Diapausing Eggs and Diapause-Activated Eggs

  • Hwnag, Jae-Sam;Go, Hyun-Jeong;Goo, Tae-Won;Yun, Eun-Young;Choi, Kwang-Ho;Seong, Su-Il;Kim, Sung-Kuk;Lee, Sang-Mong;Kim, Iksoo;Kim, Nam-Soon;Kang, Seok-Woo
    • International Journal of Industrial Entomology and Biomaterials
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    • 제9권1호
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    • pp.145-148
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    • 2004
  • As an initial step to define the molecular mechanism of diapause during embryogenesis of the silkworm, Bombyx mori, mRNA transcripts from diapausing eggs and diapause-activated eggs were compared by differential expression using cDNA microarray. Twenty-four individual cDNA clones were identified. Amomg them, ten genes including alcohol dehydrogenase, dead box-l, cytochrome oxidase subunit I and 18 wheeler showed increased expression in the diapause-activated eggs. The rest of fourteen genes showed increased expression in diapausing eggs.