• Title/Summary/Keyword: cluster method

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Analysis of Genetic Relationship of Apple Varieties using Microsatellite Markers (Microsatellite 마커를 이용한 사과 품종 간 유전적 유연관계 분석)

  • Hong, Jee-Hwa;Kwon, Yong-Sham;Choi, Keun-Jin
    • Journal of Life Science
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    • v.23 no.6
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    • pp.721-727
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    • 2013
  • The objective of this study was to evaluate the suitability of microsatellite markers for variety identification in 42 apple varieties. For microsatellite analysis, 305 primer pairs were screened in 8 varieties and twenty six primer pairs showed polymorphism with clear band pattern and repetitive reproducibility. A total of 165 polymorphic amplified fragments were obtained in 42 varieties using 26 markers. Two to twelve alleles were detected for each locus with an average of 6.4 alleles per locus. A value of polymorphism information content (PIC) ranged from 0.461 to 0.849 with an average of 0.665. A total of 165 marker loci were used to calculate Jaccard's distance coefficients using unweighted pair-group method with arithmetical average (UPGMA) cluster analysis. Genetic distance of cluster ranged from 0.27 to 1.00. Analysis of genetic relationship revealed that these 26 microsatellite marker sets discriminated a total of 41 varieties except for 1 variety among 42 varieties. These markers will be utilized as molecular data in variety identification of apple.

Relationship between Health Knowledge and Needs for Oral Health Education According to Oral Health-related Experience of Some Maritime Police Officers (일부 해양경찰들의 구강보건경험 유무에 따른 구강보건지식수준과 구강보건교육 요구도)

  • Ji, Yun-Jeong;Yoon, Hyun-Seo
    • The Journal of the Korea Contents Association
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    • v.15 no.7
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    • pp.322-329
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    • 2015
  • The purpose of this study was to examine the oral health knowledge of maritime police officers, whose job belonged to the cluster of special occupations, in an effort to provide some information on the development of oral health education programs. The subjects in this study were 499 maritime police officers. After a survey was conducted from March to September, 2013, it's found that just 104 respondents(22.8%) had experience of receiving oral health education. In terms of general knowledge, the respondents who received that education were different from the others who didn't in the level of knowledge on the items related to temporomandibular joint(p=0.026), and there were no differences between the two in knowledge of periodontal health. As for prevention-related knowledge, they had a good knowledge of fluorine. Concerning needs for oral health education, 67.1 percent considered oral health professional manpower to be necessary, and 77.9 percent of the respondents who received oral health education gave this reply(p=0.004). Regarding preference for educational content, the right toothbrushing method was most preferred, followed by oral counseling, the use of oral hygiene supplies, the selection of dentifrice, and nutrition/anti-smoking education. The findings of the study suggest that the development of oral health education programs geared toward the cluster of special occupations such as maritime police is required.

Study on Relationship between Elderly Group Lifestyle and Selection Attributes in the Health Functional Foods (실버층 라이프스타일에 따른 건강기능식품 선택속성에 관한 연구)

  • Lee, Myung Sook;Kim, Sook Eung
    • Korean Journal of Clinical Pharmacy
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    • v.25 no.4
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    • pp.286-295
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    • 2015
  • Objective: This experiment is to study how elderly group and their various lifestyles interact with health functional foods, according to their selection behavior. Different lifestyles will be observed closely, as well as how different health conditions and consumer involvements will affect critical decision making in selecting health functional foods. Method: Theories and discoveries from original advanced research were compared parallel to the new study. Results: First, cluster analysis and exploratory analysis were performed amongst different elder lifestyles. Lifestyle exploratory analysis was used for healthy, unique, leisure, and economical-style elders. Cluster analysis was used for material trend oriented, health oriented, complacent oriented-style elders. Health Functional Foods' selection trait Exploratory Factor Analysis showed that product's originality (function, uniqueness, specialty, compatibility, distributor, expiration date), quality (amount, daily dose, visual representation, accessibility, portability, natural ingredients), and popularity (product container, brand image, taste and smell, advertised product, domestic or import, well-known function) were the three main causes. Secondly, the amount of benefits for the elderly group health lifestyle were affected by 'Interest in health', 'Notability of the health functional food', and 'Functionality approved mark'. Specifically, the importance of, 'Interest in health', 'Notability of health functional food', and 'Functionality approved mark' were noticeably high within health oriented elders. Lastly, after examining the data from elder lifestyle's relationship with health functional food selection trait, all three different results showed equal importance. If you closely examine material trend oriented elderly group, selection trait showed distinctively high regards in 'Fundamental Attribute', 'Typical Attribute', and 'Cognitive Attribute'. Health oriented elders showed their distinctively high regards in 'Natural Attribute', and less consideration in 'Typical Attribute' and 'Cognitive Attribute'. Complacent oriented-style elderly group showed less focus on 'Fundamental Attribute', and even less in 'Typical Attribute', and 'Cognitive Attribute'. Health oriented elderly group concluded with above data from the fact that they showed most importance and involvement in health beneficial products that are scientifically proven. Material trend oriented elderly group showed balanced traits in their concluded data, showing that they prefer function, safety, as well as the brand image and their reputation. Also, they consider the products' outer elements, such as design and product name, in order to sense inner functions. Conclusion: So, Silver Business corporations must develop products to fulfill the market demands, and strategize marketing plans to better target the correct audience.

Genetic Variation in Mutants Induced by Gamma Ray in Hypsizigus marmoreus (느티만가닥버섯에서 감마선에 의한 돌연변이체들의 유전적 변이)

  • Kim, Jong-Bong;Yu, Dong-Won
    • Journal of Life Science
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    • v.24 no.11
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    • pp.1174-1179
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    • 2014
  • This research was carried out to evaluate whether gamma ray is a useful tool for breeding new strains of mushrooms. For this research, 5 mutant groups, 20 strains of Hypsizigus marmoreus, 2 strains of Lyophyllum decastes, and 1 strain of Lyophyllum shimeji were used. Monokaryon spores from one variety of H. marmoreus were irradiated with 50~2,000 Gy of gamma ray. The propriety dose was 50~200 Gy for mutagenesis. Mutant monokaryon mycelia crossed each order to become dikaryon mycelia. The internal transcribed spacer (ITS) regions of rDNA were amplified using PCR, and the products were sequenced. The sequences of the ITS regions (16 partial rDNA, complete ITS1, 5.8 rDNA and partial rDNA) were analyzed by PCR, and strains of H. marmoreus, L. decastes, and L. shimeji were auto-sequenced. The lengths of the sequenced ITSs were 1,052~1,143 nucleotides. Genetic matrices were calculated using Nei-Li's genetic distance coefficient based on ITS sequence. The dissimilarities were 0~3.35% in strains of H. Hypsizigus. In addition, a phylogenetic tree was constructed based on ITS sequences using the neighbor-joining (NJ) method. The phylogenetic tree revealed that 23 strains and 5 mutant groups were divided into 12 clusters; the mutant groups fell into different clusters. These results show that mushroom spores were mutated effectively by gamma ray; therefore, gamma ray could be a useful tool for breeding new strains of mushrooms.

Spatial Structure and Historical Change of Cemeteries in Seattle, USA (시애틀 공동묘지의 공간적 구조와 역사적 변화 양상)

  • Kim, Chung Ho
    • Journal of the Korean Institute of Landscape Architecture
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    • v.46 no.3
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    • pp.36-45
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    • 2018
  • Cemeteries in the United States are frequently observed near residential areas in cities even though they are spaces for the dead. However, it has not been fully studied when and how cemeteries were formed in the process of urbanization. Thus, this research aimed to investigate the spatial structure and historical change of cemeteries in Seattle due to urbanization, focusing on the contextual relationship between cemeteries and the surroundings according to two time periods: the early formation period of cemeteries in Seattle and the current period. For this, a mixed method was taken in this paper that combined historical analysis based on old references and historic maps with cluster analysis using GIS. In conclusion, the research found that early cemeteries of Seattle in downtown areas were introduced as by-products of urban formation, but the cemeteries in the suburbs were established ahead of urban growth and neighborhood development. In addition, Seattle's cemeteries not only showed a similar locational pattern to Seattle's shopping centers, but also were positively associated with population distribution given the Hot Spot Analysis. In other words, Seattle's cemeteries were originally located in rural areas, but later came to be located in urban areas, sustaining the landscape of American rural cemeteries.

Development of the KnowledgeMatrix as an Informetric Analysis System (계량정보분석시스템으로서의 KnowledgeMatrix 개발)

  • Lee, Bang-Rae;Yeo, Woon-Dong;Lee, June-Young;Lee, Chang-Hoan;Kwon, Oh-Jin;Moon, Yeong-Ho
    • The Journal of the Korea Contents Association
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    • v.8 no.1
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    • pp.68-74
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    • 2008
  • Application areas of Knowledge Discovery in Database(KDD) have been expanded to many R&D management processes including technology trends analysis, forecasting and evaluation etc. Established research field such as informetrics (or scientometrics) has utilized techniques or methods of KDD. Various systems have been developed to support works of analyzing large-scale R&D related databases such as patent DB or bibliographic DB by a few researchers or institutions. But extant systems have some problems for korean users to use. Their prices is not moderate, korean language processing is impossible, and user's demands not reflected. To solve these problems, Korea Institute of Science and Technology Information(KISTI) developed stand-alone type information analysis system named as KnowledgeMatrix. KnowledgeMatrix system offer various functions to analyze retrieved data set from databases. KnowledgeMatrix's main operation unit is composed of user-defined lists and matrix generation, cluster analysis, visualization, data pre-processing. Matrix generation unit help extract information items which will be analyzed, and calculate occurrence, co-occurrence, proximity of the items. Cluster analysis unit enable matrix data to be clustered by hierarchical or non-hierarchical clustering methods and present tree-type structure of clustered data. Visualization unit offer various methods such as chart, FDP, strategic diagram and PFNet. Data pre-processing unit consists of data import editor, string editor, thesaurus editor, grouping method, field-refining methods and sub-dataset generation methods. KnowledgeMatrix show better performances and offer more various functions than extant systems.

A New Similarity Measure for Categorical Attribute-Based Clustering (범주형 속성 기반 군집화를 위한 새로운 유사 측도)

  • Kim, Min;Jeon, Joo-Hyuk;Woo, Kyung-Gu;Kim, Myoung-Ho
    • Journal of KIISE:Databases
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    • v.37 no.2
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    • pp.71-81
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    • 2010
  • The problem of finding clusters is widely used in numerous applications, such as pattern recognition, image analysis, market analysis. The important factors that decide cluster quality are the similarity measure and the number of attributes. Similarity measures should be defined with respect to the data types. Existing similarity measures are well applicable to numerical attribute values. However, those measures do not work well when the data is described by categorical attributes, that is, when no inherent similarity measure between values. In high dimensional spaces, conventional clustering algorithms tend to break down because of sparsity of data points. To overcome this difficulty, a subspace clustering approach has been proposed. It is based on the observation that different clusters may exist in different subspaces. In this paper, we propose a new similarity measure for clustering of high dimensional categorical data. The measure is defined based on the fact that a good clustering is one where each cluster should have certain information that can distinguish it with other clusters. We also try to capture on the attribute dependencies. This study is meaningful because there has been no method to use both of them. Experimental results on real datasets show clusters obtained by our proposed similarity measure are good enough with respect to clustering accuracy.

Competition - Ecological Classification of the Prominent Paddy Weed Species around Bulrush(Scirpus juncoides) (올챙고랭이(Scirpus juncoides)를 중심으로 한 주요(主要) 논 잡초종(雜草種)의 벼 경합생태적(競合生態的) 분류(分類))

  • Guh, J.O.;Heo, S.M.
    • Korean Journal of Weed Science
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    • v.5 no.2
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    • pp.96-102
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    • 1985
  • A study on the competition-ecological classification of the 10 prominent paddy weed species around bulrush (Scirpus juneoides) to simplify the weed problem concept for the rice production. A serial assessments on the competition ability in space and dry matter production(nutrient depletion) of respective weed species and paddy rice, and the data were used to compute the phenotypic similarity by Single Link Clustering method. Both growth response of weed species in mono- and under the paddy rice standing was very similar (r = 0.969), but the reduction rate as affected by paddy rice standing was negatively correlated with the ability in space-competition(r=-0.513). Dendrogram of 10 weed species based on the phenotypic similarity computed in 4 characters in mono- and under the paddy rice standing was also similar, as Echinochloa c., Ludwigia p., Cyperus s., and Scirpus m. in I-group, Eleocharis k., Scirpus j, in II-group, and Juncus e., Potamogeton d. in III-group, respectively. Also, that of paddy rice to 10 weed species showed Fimbristylis m., Scirpus j., Eleocharis k., Scirpus m., Juncus e. in I-group, and Ludwigia p., Potamogeton d., Monochoria v. in II-group, respectively. The integrated dendrogram by the above two data indicate the I-group with Fimbristylis m., Scirpus j., Eleocharis k. and Juncus e., as higher growth response with relatively lower competition ability to paddy rice, II-group with Cyperus s., Echinochloa c., Potamogeton d., and Ludwigia p., as higher both in growth and competition, and the last, III-group with Monochoria v., and Scirpus m., as lower growth but higher competition, respectively.

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Development and validation of poisson cluster stochastic rainfall generation web application across South Korea (포아송 클러스터 가상강우생성 웹 어플리케이션 개발 및 검증 - 우리나라에 대해서)

  • Han, Jaemoon;Kim, Dongkyun
    • Journal of Korea Water Resources Association
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    • v.49 no.4
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    • pp.335-346
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    • 2016
  • This study produced the parameter maps of the Modified Bartlett-Lewis Rectangular Pulse (MBLRP) stochastic rainfall generation model across South Korea and developed and validated the web application that automates the process of rainfall generation based on the produced parameter maps. To achieve this purpose, three deferent sets of parameters of the MBLRP model were estimated at 62 ground gage locations in South Korea depending on the distinct purpose of the synthetic rainfall time series to be used in hydrologic modeling (i.e. flood modeling, runoff modeling, and general purpose). The estimated parameters were spatially interpolated using the Ordinary Kriging method to produce the parameter maps across South Korea. Then, a web application has been developed to automate the process of synthetic rainfall generation based on the parameter maps. For validation, the synthetic rainfall time series has been created using the web application and then various rainfall statistics including mean, variance, autocorrelation, probability of zero rainfall, extreme rainfall, extreme flood, and runoff depth were calculated, then these values were compared to the ones based on the observed rainfall time series. The mean, variance, autocorrelation, and probability of zero rainfall of the synthetic rainfall were similar to the ones of the observed rainfall while the extreme rainfall and extreme flood value were smaller than the ones derived from the observed rainfall by the degree of 16%-40%. Lastly, the web application developed in this study automates the entire process of synthetic rainfall generation, so we expect the application to be used in a variety of hydrologic analysis needing rainfall data.

Comparison between Planned and Actual Data of Block Assembly Process using Process Mining in Shipyards (조선 산업에서 프로세스 마이닝을 이용한 블록 조립 프로세스의 계획 및 실적 비교 분석)

  • Lee, Dongha;Park, Jae Hun;Bae, Hyerim
    • The Journal of Society for e-Business Studies
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    • v.18 no.4
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    • pp.145-167
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    • 2013
  • This paper proposes a method to compare planned processes with actual processes of bock assembly operations in shipbuilding industry. Process models can be discovered using the process mining techniques both for planned and actual log data. The comparison between planned and actual process is focused in this paper. The analysis procedure consists of five steps : 1) data pre-processing, 2) definition of analysis level, 3) clustering of assembly bocks, 4) discovery of process model per cluster, and 5) comparison between planned and actual processes per cluster. In step 5, it is proposed to compare those processes by the several perspectives such as process model, task, process instance and fitness. For each perspective, we also defined comparison factors. Especially, in the fitness perspective, cross fitness is proposed and analyzed by the quantity of fitness between the discovered process model by own data and the other data(for example, the fitness of planned model to actual data, and the fitness of actual model to planned data). The effectiveness of the proposed methods was verified in a case study using planned data of block assembly planning system (BAPS) and actual data generated from block assembly monitoring system (BAMS) of a top ranked shipbuilding company in Korea.