• Title/Summary/Keyword: cluster coefficient

Search Result 222, Processing Time 0.027 seconds

A Study on the Algal Communities of Odongdo, Southern Coast of Korea (오동도 해조군락에 관한 연구)

  • SOHN Chul Hyun
    • Korean Journal of Fisheries and Aquatic Sciences
    • /
    • v.16 no.4
    • /
    • pp.368-378
    • /
    • 1983
  • The community structure of intertidal benthic marine algae were studied seasonally at Odongdo, southern coast of Korea, from June 1982 to May 1983. Algal coverage in $50{\times}50\;cm$ quadrat were recorded for each species by line transect method. The vertical zonation investigated by line transects is recognized into three groups : Upper, middle, and lower zones. The representative species are Gelidium divaricatum, Enteromorpha linza, Porphyra yezoensis, Scytosiphon lomentaria, Blidingia nana, Ectocarpus confervoides in the upper, Ulva pertusa, Chondria crassicaulis in the middle, and Sargassum sagamianum, S. thunbergii, Undaria pinnatifida, Gelidium amansii and various other red algae in the lower zone. The number of algal species and coverage were generally highest in April and lowest in August. Species which appear dominant at least once a year were all of the spring type and the others were autumn type. According to the cluster analysis by similarity index community coefficient(SICC) among 5 transects, the algal communities are divided into two groups, i. e. open-sea group and inland-sea group.

  • PDF

Novel assessment method of heavy metal pollution in surface water: A case study of Yangping River in Lingbao City, China

  • Liu, Yingran;Yu, Hongming;Sun, Yu;Chen, Juan
    • Environmental Engineering Research
    • /
    • v.22 no.1
    • /
    • pp.31-39
    • /
    • 2017
  • The primary purpose of this research is to understand those elements that define heavy metals contamination and to propose a novel assessment method based on principal component analysis (PCA) in the Yangping River region of Lingbao City, China. This paper makes detailed calculations regarding such factors the single-factor assessment ($P_i$) and Nemerow's multi-factor index ($P_N$) of heavy metals found in the surface water of the Yangping River. The maximum values of $P_i$ (Cd) and $P_i$ (Pb) were determined to be 892.000 and 113.800 respectively. The maximum value of $P_N$ was calculated to be 639.836. The results of Pearson's correlation analysis, hierarchical cluster analysis, and PCA indicated heavy metal groupings as follows: Cu, Pb, Zn and As, Hg, Cd. The PCA-based pollution index ($P_{an}$) of samplings was subsequently calculated. The relative coefficient square was valued at 0.996 between $P_{an}$ and $P_N$, which indicated that $P_{an}$ is able to serve as a new heavy metal pollution index; not only this index able to eliminate the influence of the maximum value of $P_i$, but further, this index contains the principal component elements needed to evaluate heavy metal pollution levels.

Inter simple sequence repeat (ISSR)-PCR based polymorphism of Agaricus bisporus strains and monokayon isolates (Inter simple sequence repeat (ISSR)-PCR에 의한 양송이버섯(Agaricus bisporus) 계통과 단핵균주의 다형성 분석)

  • Min, Kyong-Jin;Kong, Won-Sik;Kang, Hee-Wan
    • Journal of Mushroom
    • /
    • v.13 no.3
    • /
    • pp.175-180
    • /
    • 2015
  • Twenty Inter simple sequence repeat (ISSR) primers were used to assess genetic diversity of 64 Agaricus strains including 45 A. bisporus strains and other 19 Agaricus spp. ISSR primers, (GA)T, (AG)YC, (GA)C and (CTC) amplified PCR polymorphic bands between the Agaricus species or within A. bisporus strains. PCR polymorphic bands were inputted for UPGMA cluster analysis. The varieties, Saea, Saedo, Saejeong and Saeyeon that have recently been developed in Korea were involved in the same group with closely genetic relationship of coefficient similarity over 0.92, whereas, other Korean strains were genetically related to A. bisporus strains that were introduced from USA, Eroupe and Chinese. Furthermore, ISSR-PCR polymorphism could potentially be used to identify homokaryon isolates.

Halotolerant Spore-Forming Gram-Positive Bacterial Diversity Associated with Blutaparon portulacoides (St. Hill.) Mears, a Pioneer Species in Brazilian Coastal Dunes

  • Barbosa Deyvison Clacino;Irene Von Der Weid;Vaisman Natalie;Seldin Lucy
    • Journal of Microbiology and Biotechnology
    • /
    • v.16 no.2
    • /
    • pp.193-199
    • /
    • 2006
  • Halotolerant spore-forming Gram-positive bacteria were isolated from the root, rhizosphere, and non-rhizosphere soil of Blutaparon portulacoides. The different isolates were characterized genetically using an amplified ribosomal DNA restriction analysis (ARDRA), and phenotypically based on their colonial morphology, physiology, and nutritional requirements. Three different 16S rRNA gene-based genotypes were observed at a 100% similarity using the enzymes HinfI, MspI, and RsaI, and the phenotypic results also followed the ARDRA groupings. Selected strains, representing the different ARDRA groups, were analyzed by 16S rDNA sequencing, and members of the genera Halobaeillus, Virgibacillus, and Oceanobacillus were found. Two isolates showed low 16S rDNA sequence similarities with the closest related species of Halobacillus, indicating the presence of new species among the isolates. The majority of the strains isolated in this study seemed to belong to the species O. iheyensis and were compared using an AP-PCR to determine whether they had a clonal origin or not. Different patterns allowed the grouping of the strains according to Pearson's coefficient, and the resulting dendrogram revealed the formation of two main clusters, denoted as A and B. All the strains isolated from the soil were grouped into cluster A, whereas cluster B was exclusively composed of the strains associated with the B. portulacoides roots. This is the first report on the isolation and characterization of halotolerant spore-forming Gram-positive bacteria that coexist with B. portulacoides. As such, these new strains may be a potential source for the discovery of bioactive compounds with industrial value.

An Analysis of Consumers' Acceptance of the Sportive Fashion Trends according to their Lifestyle (소비자(消費者)의 라이프스타일에 따른 스포티브 패션 트렌드의 수용(受容) 현황(現況)과 배경(背景) 분석(分析))

  • Kim, Sook-Hyeun;Lee, Joo-Hyeon
    • Journal of Fashion Business
    • /
    • v.6 no.1
    • /
    • pp.1-19
    • /
    • 2002
  • The purpose of this study was to suggest the most appropriate design concepts for sportive fashion product based on the analysis of consumers' acceptance of the recent sportive fashion trends according to their lifestyle. The subjects consisted of 295 males and females, between 17 and 35 year-old. A self-report questionnaire with 4 stimuli was employed for data gathering, and the data were analyzed by the methods of frequency, factor analysis, cluster analysis, and Pearson's correlation coefficient. The results of this study were summarized as follows: For the First, the recent sportive fashion trends were categorized into four groups; 'street- sportive' trend, 'futuristic-sportive' trend, 'ethnic-sportive' trend and 'urban-utility sportive' trend. Secondly, based on the result of cluster analysis on consumers' lifestyle, total four consumer groups were identified; 'pursuing sense' group, 'pursuing culture' group, 'pursuing utility' group, and 'indifference' group. Thirdly, the consumers relatively preferred two sportive styles among the four groups, typically representing 'urban-utility' trend and 'street' trend. The typical 'urban-utility' style was particularly preferred by the consumers who desired to express themselves as urban, modern, and luxurious. The typical 'street' style was preferred by the consumers who tried to express themselves as active and fashionable. Finally, preferences of the sportive trends according to consumers' lifestyle were interpreted as follows: the 'pursuing sense' group relatively preferred 'urbanutility' style and 'street' style, the 'pursuing culture' group preferred 'street' style and the 'pursuing utility' group preferred 'urban-utility' style, meaningwhile the 'indifference' group preferred 'street' style and 'urban- utility' style.

Somatometric Characteristics and Classification of Early Elementary Schoolgirls -Focusing on the Upper Body- (학령전기 여아의 체형특성과 유형분석 -상반신 체형을 중심으로-)

  • 장정아;권미정;배은아
    • Journal of the Korean Society of Clothing and Textiles
    • /
    • v.26 no.5
    • /
    • pp.573-581
    • /
    • 2002
  • This study was done to classify children's somatotypes and to provide the fundamental data or their clothing sizing system for the purpose of designing patterns fur children's wear and standardizing sizes of ready-made clothes. The sampling was done for 7-8 years-old-girl living in Pusan and Kyungsangnam-do. Data from each girl comprises 33 anthropometic measurments and 7 photogrphic measurments, based on the somatometric characteristics of girls which I had obtained. Factor analysis, cluster analysis, discriminant analysis were performed for statistical analysis of the data. Seven factors which explain 76.49% of the whole variances were extracted. The thirst and second factors which explain more than 70% of the whole variances represent 'horizontal size 'and 'vortical size', which characterize most aspects of the body shape of the subjects. On the basis of the cluster analysis, three different upper body types were categorized. Type 1 has quite long surface length of the upper body and rising shoulders and are close to the averages of this age group. Type 2 has highest stature, biggest frame, dropped shoulders and surface length of the upper body similar to the type 1. Type 3 has shortest stature, smallest frame and sloping shoulders. According to the analysis to discriminate somatotypes of the upper body by this age group, the discriminative items in discriminant function are follows. As this group, waist circumference of discriminant function 1 and front length and length between both shoulder points of discriminant function 2 have large coefficient values.

Urban industrial and structure and diversification:converging trend among urban economies (도시산업구조와 다변화:도시경제간의 수렴성향)

  • Kim, Hak-Hoon
    • Journal of the Korean Geographical Society
    • /
    • v.28 no.4
    • /
    • pp.356-378
    • /
    • 1993
  • This study examines the competitiveness of urban industrial structure and its changing characteristics. Cluster analysis of Arizona towns based on economic functions revealed the changing characteristics of urban functions over time. The relationship between the changes of urban functions and industrial competitiveness was confirmed through shift-share analysis. The level of industrial specialization has become more closely related to urban size in terms of both population and employment, but the relationship between metropolitan location and specialization level is not clear. Also, it is validated that the economies of Arizona towns have become more diversified and, consequently, have tended to converge toward the state average in industrial structure over time.

  • PDF

Analysis of Genetic Relationship among Korean Native Orostachys Species Using RAPD (RAPD를 이용한 자생 바위솔속(Orostachys) 식물의 유연관계 분석)

  • Lee, Byoung Ae;Kim, Hag Hyun;Cho, Yong Gu;Lee, Cheol Hee
    • Horticultural Science & Technology
    • /
    • v.19 no.2
    • /
    • pp.159-162
    • /
    • 2001
  • The genetic relationships of Korean native Orostachys species collected from various regions were analysed using random amplified polymorphic DNA (RAPD) method. Eighteen Orostachys species analysed with UPGMA were clustered into three groups A, B, and C. However, four species were not clustered into any group. O. iwarenge species in group A (No. 18-No. 22) showed low similarity with 66.3-73.9% according to the cluster analysis. O. malacophyllus species in group B (No. 12-No. 17) showed low similarity with 66.7-83.7% according to the cluster analysis. The similarity coefficient value of O. japonicus (No. 3-No. 8) except Anmyeondo collected variety (No. 9) showed higher level with 84.2-92.3% than O. iwarenge or O. malacophyllus. Therefore, O. japonicus is thought to be genetically stable, and have less regional variation.

  • PDF

A Comparative Study on Clustering Methods for Grouping Related Tags (연관 태그의 군집화를 위한 클러스터링 기법 비교 연구)

  • Han, Seung-Hee
    • Journal of the Korean Society for Library and Information Science
    • /
    • v.43 no.3
    • /
    • pp.399-416
    • /
    • 2009
  • In this study, clustering methods with related tags were discussed for improving search and exploration in the tag space. The experiments were performed on 10 Delicious tags and the strongly-related tags extracted by each 300 documents, and hierarchical and non-hierarchical clustering methods were carried out based on the tag co-occurrences. To evaluate the experimental results, cluster relevance was measured. Results showed that Ward's method with cosine coefficient, which shows good performance to term clustering, was best performed with consistent clustering tendency. Furthermore, it was analyzed that cluster membership among related tags is based on users' tagging purposes or interest and can disambiguate word sense. Therefore, tag clusters would be helpful for improving search and exploration in the tag space.

Genetic diversity of Saudi native chicken breeds segregating for naked neck and frizzle genes using microsatellite markers

  • Fathi, Moataz;El-Zarei, Mohamed;Al-Homidan, Ibrahim;Abou-Emera, Osama
    • Asian-Australasian Journal of Animal Sciences
    • /
    • v.31 no.12
    • /
    • pp.1871-1880
    • /
    • 2018
  • Objective: Recently, there has been an increasing interest in conservation of native genetic resources of chicken on a worldwide basis. Most of the native chicken breeds are threatened by extinction or crossing with ecotypes. Methods: Six Saudi native chicken breeds including black naked neck, brown frizzled, black, black barred, brown and gray were used in the current study. The aim of the current study was to evaluate genetic diversity, relationship and population structure of Saudi native chicken breeds based on 20 microsatellite markers. Results: A total of 172 alleles were detected in Saudi native chicken breeds across all 20 microsatellite loci. The mean number of alleles per breed ranged from 4.35 in gray breed to 5.45 in normally feathered black with an average of 8.6 alleles. All breeds were characterized by a high degree of genetic diversity, with the lowest heterozygosity found in the brown breed (72%) and the greatest in the frizzled and black barred populations (78%). Higher estimate of expected heterozygosity (0.68) was found in both black breeds (normal and naked neck) compared to the other chicken populations. All studied breeds showed no inbreeding within breed (negative inbreeding coefficient [$F_{IS}$]). The phylogenetic relationships of chickens were examined using neighbor-joining trees constructed at the level of breeds and individual samples. The neighbor-joining tree constructed at breed level revealed three main clusters, with naked neck and gray breeds in one cluster, and brown and frizzled in the second cluster leaving black barred in a separate one. Conclusion: It could be concluded that the genetic information derived from the current study can be used as a guide for genetic improvement and conservation in further breeding programs. Our findings indicate that the Saudi native chicken populations have a rich genetic diversity and show a high polymorphism.