• Proceedings of the Polymer Society of Korea Conference
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• 2006.10a
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• pp.261-261
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• 2006

Membranes are a central feature of all biological systems and their ability to control many cellular processes is critically important. As a result, a better understanding of how molecules bind to biological membranes is an active area of research. In this report, the interaction between our biomimetic structures and different biological membranes is reported using both model vesicle and in vitro bacterial cell experiments. These results show that lipid composition is more important for selectivity than overall net charge. An effort is made to connect model vesicle studies with in vitro data and naturally occurring lipid compositions.

• Fisheries and Aquatic Sciences
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• v.26 no.4
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• pp.268-281
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• 2023

Coral reef fisheries are prominent for the archipelagic countries' food sufficiency and security. Studies showed that fish abundance and biomass are affected by biophysical variables. The present study determines which biophysical variables are important predictors of fish diversity, abundance, and biomass. The study used available monitoring data from the Indonesian Research Center for Oceanography, the National Board for Research and Innovation. Data were collected from 245 transects in 19 locations distributed across the Indonesian Archipelago, including the eastern Indian Ocean, Sunda Shelf (Karimata Sea), Wallacea (Flores and Banda Seas), and the western Pacific Ocean. Principal component analysis and multiple regression model were administered to 13 biophysical metrics against 11 variables of coral reef fishes, i.e., diversity, abundance, and biomass of coral reef fishes at three trophic levels. The results showed for the first time that the covers of other fauna, coral rubbles, and soft corals were the three most important predictor variables for nearly all coral reef fish variables. Other fauna cover was the important predictor for all 11 coral reef fish variables. Coral rubble cover was the predictor for ten variables, but carnivore fish abundance. Soft coral cover was a good predictor for corallivore, carnivore, and targeted fishes. Despite important predictors for corallivore and carnivore fish variables, hard coral cover was not the critical predictor for herbivore fish variables. The other important predictor variables with a consistent pattern were dead coral covered with algae and rocks. Dead coral covered with algae was an important predictor for herbivore fishes, while the rock was good for only carnivore fishes.

• Journal of the Korean Society of Visualization
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• v.16 no.1
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• pp.15-20
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• 2018

For the measurement of biophysical properties related with cardiovascular diseases (CVD), various microfluidic devices were proposed. However, many devices were monitored by optical equipment. Ultrasound measurement to quantify the biophysical properties can provide new insights to understand the cardiovascular diseases. This study aims to check feasibility of microfluidic device for ultrasound image analysis based on 3D printer. To facilitate acoustic transmission, agarose solution is poured around 3D mold connected with holes of the acrylic box. By applying speckle image velocimetry(SIV) technique, flow information in the bifurcated channel was estimated. Considering that ultrasound signal amplitude is determined by red blood cell (RBC) aggregation, RBC aggregation in the bifurcated channel can be estimated through the analysis of ultrasound signal. As examples of microfluidic device which mimic the CVD model, velocity fields in microfluidic devices with stenosis and aneurysm were introduced.

• Proceedings of the Korean Biophysical Society Conference
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• 2003.06a
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• pp.70-70
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• 2003

Active sites and substrate bindings of 1-aminoxyclopropane-1-carboxylate oxidase (MD-ACO1) catalyzing the oxidative conversion of ACC to ethylene have been determined based on site-directed mutagenesis and comparative modeling methods. Molecular modeling based on the crystal structure of Isopenicillin N synthase (IPNS) provided MD-ACO1 structure. MD-ACO1 protein folds into a compact jelly roll shape, consisting of 9 ${\alpha}$-helices, 10 ${\beta}$-strands and several long loops. The MD-ACO1/ACC/Fe(II)/Ascorbate complex conformation was determined from automated docking program, AUTODOCK. The MD-ACO1/Fell complex model was consistent with well known binding motif information (HIS177-ASP179-HIS234). The cosubstrate, ascorbate is placed between iron binding pocket and Arg244 of MD-ACO1 enzyme, supporting the critical role of Arg244 for generating reaction product. These findings are strongly supported by previous biochemical data as well as site-directed mutagenesis data. The structure of enzyme/substrate suggests the structural mechanism for the biochemical role as well as substrate specificity of MD-ACO1 enzyme.

• Korean Journal of Environmental Biology
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• v.26 no.1
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• pp.1-7
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• 2008

A mathematical model for the synergistic interaction of physical and chemical environmental agents was suggested for quantitative prediction of irreversibly damaged cells after combined exposures. The model took into account the synergistic interaction of agents and was based on the supposition that additional effective damages responsible for the synergy are irreversible and originated from an interaction of ineffective sublesions. The experimental results regarding the irreversible component of radiation damage of diploid yeast cells simultaneous exposed to heat with ionizing radiation ($^{60}Co$) or UV light (254 nm) are presented. It was shown that the cell ability of the liquid holding recovery decreased with an increase in the temperature, at which the exposure was occurred. A good correspondence between experimental results and model prediction was demonstrated. The importance of the results obtained for the interpretation of the mechanism of synergistic interaction of various environmental factors is discussed.

• Proceedings of the KSRS Conference
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• 2003.11a
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• pp.207-209
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• 2003

Quantifying crop production is one of the most important applications of remote sensing in which the temporal and up-to-date data can play very important role in avoiding any immediate insufficiency in agricultural production. A combination of climatic data and biophysical parameters derived from Landsat7 ETM+ was used to develop a mathematical model for wheat yield forecast in different geographically wide Wheat growing districts in Egypt. Leaf Area Index (LAI) and fraction of Absorbed Photosynthetically Active Radiation (fAPAR) with temperature were used in the modeling. The model includes three sub-models representing the correlation between the reported yield and each individual variable. Simulation results using district statistics showed high accuracy of the derived correlations to estimate wheat production with a percentage standard error (%S.E.) of 1.5% in El- Qualyobia district and average (%S.E.) of 7% for the whole wheat areas.

• Proceedings of the Korean Biophysical Society Conference
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• 2003.06a
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• pp.34-34
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• 2003

Protein unfolding is a key step in several cellular processes, including protein translocation across some membranes and protein degradation by ATP-dependent proteases. C1pAP protease and the proteasome can actively unfold proteins in a process that hydrolyzes ATP, These proteases catalyze unfolding by processively unraveling their substrates from the attachment point of the degradation signal. As a consequence, the ability of a protein to be degraded depends on its structure as well as its stability. An ${\alpha}$-helix is easier to unravel than a ${\beta}$-strand. In multidomain proteins, independently stable domains are unfolded sequentially. The steric constraints imposed on substrate proteins during their degradation by the proteasome were investigated by constructing a model protein in which specific parts of the polypeptide chain were covalently connected through disulfide bridges. The cross-linked model proteins were fully degraded by the proteasome, but two or more cross-links retarded the degradation slightly. Our results suggest that the pore of the proteasome allows the concurrent passage of at least three stretches of a polypeptide chain, and also explain the limited degradation by the proteasome that occurs in the processing of the transcription factor NF-KB, and also implicate difficulty in degradation of amyloidal aggregates by the proteasome

• Korean Journal of Remote Sensing
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• v.22 no.6
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• pp.533-542
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• 2006

Lidar point clouds provide three dimensional information of terrain surface and have a great advantage to generate precise digital elevation model (DEM), particularly over forested area where some laser signals are transmitted to vegetation canopy and reflected from the bare ground. This study initially investigates the characteristics of lidar-derived height information as related to vertical structure of forest stands. Then, we propose a new filtering method to separate ground points from Lidar point clouds, which is a prerequisite process both to generate DEM surface and to extract biophysical information of forest stands. Laser points clouds over the forest stands in central Korea show that the vertical distribution of laser points greatly varies by the stand characteristics. Based on the characteristics, the proposed filtering method processes first and last returns simultaneously without setting any threshold value. The ground points separated by the proposed method are used to generate digital elevation model, furthermore, the result provides the possibilities to extract other biophysical characteristics of forest.

• Journal of the Korean Society of Radiology
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• v.9 no.6
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• pp.417-420
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• 2015

We obtained Surviving Fraction (SF) after irradiation carbon beam to compare the applicability of the Linear-Quadratic model, Incomplete Repair model, Marchese model. Mathematica software(ver 9.0) used to calcurate parameters and compared result. LQ model could not explain the entire response of fractionated carbon beam irradiation. It becomes necessary to construct models that extend the LQ model of conventional radiotherapy for the carbon beam therapy. By combining both Potentially Lethal Damage Repair (PLDR) and Sublethal Damage Repair (SLDR) a new LQ model can develop that aptly modeled the cellular response to fractionated irradiation.

• Bulletin of the Korean Chemical Society
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• v.30 no.6
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• pp.1262-1266
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• 2009

Thermodynamics of the interaction between Cerium (III) chloride, $Ce^{3+}$, with Human Serum Albumin, HSA, was investigated at pH 7.0 and $27\;{^{\circ}C}$ in phosphate buffer by isothermal titration calorimetry. Our recently solvation model was used to reproduce the enthalpies of HSA interaction by $Ce^{3+}$. The solvation parameters recovered from our new model, attributed to the structural change of HSA and its biological activity. The interaction of HSA with $Ce^{3+}$ showed a set of two binding sites with negative cooperativity. $Ce^{3+}$ interacts with multiple sites on HSA affecting its biochemical and biophysical properties.