• Title/Summary/Keyword: allozyme

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Genetic Relationships and Protein Variations during Development within the Drosophila melanogaster Species Group. III. allozyme Analysis (D. melunogaster species group의 발생단계에 따른 단백질의 변화와 유전적 유연관계 III. 효소분석)

  • 이택준;홍경자
    • The Korean Journal of Zoology
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    • v.37 no.4
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    • pp.580-591
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    • 1994
  • 한국산 Drosophila melanogaster species group 8종의 생화학적 유연관계를 조사하기 위하여 3령기 유충, 말기 번데기, 성체의 세 발생단계에서 각각 효소 분석을 실시하였다. Rogers의 공식에 의해 각 발생단계 별로 8종간의 유전적 유사도를 계산하고 그 값을 근거로 UPGMA법에 의한 dendrogram을 작성하였다. 발생단계에 따라 관찰된 효소allele의 빈도는 큰 차이를 나타냈는데 이는 효소의 활성도나 유전자 발현의 발생단계별 차이로 생각되었다 이러한 발생단계별 효소분석 결과의 차이에도 불구하고 세 발생단계에서 모두 같은 pattern의 dendrogram이 얻어졌다. 따라서 대소 분석은 성체뿐만 아니라 유충이나 번데기와 같은 초기발생단계를 재료로 취할 때에도 종간 유연관계의 분석에 유용한 분석법이 될 것으로 생각할 수 있었다 세 발생단계에서 효소분석을 통해 얻어진 결과로 볼 때 D. melanogaster species group 8종은 크게 두개의 계통으로 나뉘었는데 D. melonogaster와 여. simulons, D. lutescens가 한 계통에 속했고 D. suzukii와 D. aurauia, D. biourariu, D. trioururia, D. rufa가 다른 한 계통에 속하고 있는 것으로 나타났다.

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한국 섬집단에 있어서 D.melanogaster의 효소좌위와 염색체간의 연관관계

  • Kang, Young-Soon;Kim, Wook
    • The Korean Journal of Zoology
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    • v.35 no.1
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    • pp.87-95
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    • 1992
  • 한국의 세 섬집단으로부터 채집한 Drosophila melanogaster를 대상으로 465개의 haploid genome을 추출한 후, 제 2염색체 상에 위치한 Gpdh와 각서 유전자 및 In(2I)t의 빈도를 조사하여 이들간의 연관관계를 분석한 결과 Gpdh와 Adh 효소 좌위 사이 에 유의 한 연관 불평형 이 제주도와 울릉도집 단에서 관찰되었으며 , Gpdh와 In(2I)t, Adh와 In(21)t 사이에 모두 유의한 연관 불평형이 제주도, 영종도 그리고 울릉도집단에서 관찰되었다. 조사된 전체 genome들 중에서 In(21)t 를 가지고 있는 염색체의 98%(48/49)가 Gpdhf와 Adhs형으로 연관된 결과를 보였다. 이러한 결과들로 볼 때 이들 효소 좌위 사이에 나타난 연관 불평형은 In(21)t와의 hitchhiking현상에 의해 나타난 결과로 해석되며 본 섬집단에서 그 정도가 더 심한 것으로 확인되었다.

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Genetic variation in populations of the Korean endemic Eranthis byunsanensis (Ranunculaceae) (한국 특산식물 변산바람꽃(Eranthis byunsanensis)의 유전적 변이)

  • So, Soonku;Lee, Byongsoon;Park, Ki-Ryong
    • Korean Journal of Plant Taxonomy
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    • v.42 no.4
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    • pp.253-259
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    • 2012
  • The genetic variation in populations of Eranthis byunsanensis, an endemic and rare species of Korea, was studied using starch gel electrophoresis. All five known populations were sampled for allozyme electrophoresis of nine enzymes coded by 10 loci. The overall genetic variation of E. byunsanensis population was shown to be considerably high within the populations (A = 2.4, P = 90.0, $H_E$ = 0.311). A positive $F_{IS}$ value of E. byunsanensis indicated an overall deficiency of heterozygotes, and a low $F_{ST}$ value (0.131) showed little differentiation among populations. The high genetic variation, less genetic differentiation among populations, and a significant amount of heterozygote deficiency propose the hypothesis that they have an experience of recent isolation and fragmentation of their habitat. Thus, the rate of gene flow has been drastically reduced, and the rate of inbreeding in E. byunsanensis populations has increased. Current habitats in Mai-san and Naro-do are vulnerable due to their small population size and the levels of anthropogenic activity in the region constantly threatening survival of this species. Because of the high genetic variation and low levels of differentiation among populations in E. byunsanensis, it is not issue which populations have a priority for protection, but we may concern the plan to maintain population continuously and diminish the rate of inbreeding.

Genetic Diversity and Structure of a Rare and Endemic, Spring Ephemeral Plant Corydalis filistipes Nakai of Ullung Island in Korea (울릉도 희귀.특산 식물 섬현호색의 유전적 다양성과 구조)

  • Kim, Jin-Seok;Yang, Byeong-Hoon;Chung, Jae-Min;Lee, Byeong-Cheon;Lee, Jae-Cheon
    • Journal of Ecology and Environment
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    • v.29 no.3
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    • pp.247-252
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    • 2006
  • For the spring ephemeral and myrmecochorous perennia, Corydalis filistipes Nakai (Fumariaceae), rare and narrow endemic to Ullung Island in Korea, genetic diversity and structure of 4 subpopulations of the species were investigated with allozyme markers. Levels of genetic diversity (A=1.73, $P_{95%}$=61..2%, Ho=0.201, He=0.167) were relatively lower than those of other endemic species with widespread distribution range, but considerably higher than other endemic species with similar life history traits isolated in island. The moderate level of genetic diversity within subpopulations in C. filistipes is characteristic of the species with predominantly outcrossing, myrmecochorous seed dispersal by dual function of the elaisome and mode of sexual and asexual reproduction by the cleistogamy. The analysis of fixation indices showed an overall excess of heterozygotes (mean $F_{IS}=-0.1889,\;F_{IT}=-0.1226$) relative to H-W expectations. About 5.6% of the total genetic variation was found among subpopulations ($F_{ST}$=0.0557). The strategies of reasonable conservation and management, and the maintenance mechanism of genetic diversity of Corydalis filistipes Nakai, endemic plant species in Korea were discussed.

Genetic variation and population structure of Asarum misandrum (Aristolochiaceae) in Korea (각시족도리풀(Asarum misandrum)의 유전적 다양성 및 집단 구조)

  • So, Soonku;Kim, Muyeol
    • Korean Journal of Plant Taxonomy
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    • v.43 no.3
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    • pp.181-187
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    • 2013
  • Genetic variation in Asaum misandrum, a woodland herb in Korea, was investigated based on allozyme analysis with starch gel electrophoresis. All of previously reported populations in Korea were sampled and seven loci from six enzymes were analyzed. Overall genetic variation of A. misandrum population showed considerably high levels of genetic variation within the species (A = 2.05, P = 71.4, $H_E$ = 0.294). A positive $F_{IS}$ value of A. misandrum indicated overall deficiency of heterozygotes, and a low $F_{ST}$ value (0.112) meant very little differentiation among populations. Factors contributing to the high levels of genetic diversity found within populations of A. misandrum include population maintenance via wide distribution range from Korea to Japan and primarily outcrossing breeding system. Although it showed moderate genetic diversity level, most habitats of the species were scattered and discontinuous. Besides, low numbers of individuals were found in the most habitats and individuals are collected frequently from the wild due to the unique shape of the flowers as well as the rarity of the species. Thus, there is a need to set up a reasonable conservation strategies including the maintenance mechanism of genetic diversity of A. misandrum.

Notes on genetic variation in Sedum sarmentosum (Crassulaceae): Implications for the origin of southern Korean populations (돌나물(돌나물과)집단의 유전적 변이: 남부지방 집단의 기원에 대한 암시)

  • Chung, Mi Yoon;Lopez-Pujol, Jordi;Chung, Myong Gi
    • Korean Journal of Plant Taxonomy
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    • v.46 no.4
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    • pp.371-377
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    • 2016
  • The succulent herbaceous perennial Sedum sarmentosum commonly grows in the southern part of the Korean Peninsula. It is a species native to China, most likely introduced into Korea due to its edible and medicinal uses. If plants were introduced from a single source, we would expect no or low levels of genetic variation in Korean populations. Alternatively, if plants were introduced from multiple sources, we would expect, in contrast, high levels of genetic diversity. To test which is more likely, we surveyed the degree of allozyme variation in ten populations of this species from southern Korea. We found that S. sarmentosum was monomorphic at all fifteen allozyme loci. However, two congeners (S. polytrichoides and S. kamtschaticum) and two related species (Hylotelephium ussuriense and H. verticillatum) maintain moderate to high levels of genetic diversity ($H_e=0.144$, 0.203, 0.201, and 0.204, respectively). We suggest that southern Korean populations of S. sarmentosum likely descended from a single introduction of a few plants and then became naturalized exclusively via vegetative spreading (as plants in Korea, but also as occurs in other parts of its native and naturalized range, are sterile).

Genetic Variation and Population Structure of Alder (Alnus hirsuta : Betulaceae) in Korea

  • Park, Joo-Soo;Huh, Man-Kyu
    • Journal of Life Science
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    • v.10 no.1
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    • pp.14-19
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    • 2000
  • Variation at 25 allozyme loci in Korean wateralder (Alnus hirsuta Rupr.) from nine distinct populations was measured to estimate the amount and pattern of genetic diversity and population structure. The mean genetic diversity within population was 0.166. Korean alder populations have slightly high levels of genetic diversity compared to those present in associated temperature-zone species and two Canadian alder species. Among population s genetic differentiation accounted for an significant 9% of the total variation. High gene flow(Nm=2.63) was observed. Analysis of fixation indices, calculated for all polymorphic loci in each population, showed a substantial deficiency of heterozygotes relative to Hardy-Weinberg expectations. The mean GST value A. hirsuta in Korea (GST = 0.087) is similar to those of A. rogosa in Canada (GST = 0.052). These low values of GST in two countries. reflecting little spatial genetic differentiation, may indicate extensive gene flow (via pollen and/or seeds) and/or recent colonization. These factors reduce the effect of geographic isolation of breeding and the chance for genetic divergence. A pattern of increasing is observed with increasing rainfall per year. Regression analysis indicates that 54% (F = 4.67) of the variability observed can be explained by this relationship.

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Spatial Genetic Structure of Allozyme Polymorphisms within a Small Population of Abies nephrolepis in Mt. Ohdae, South Korea

  • Lee, Seok-Woo;Yang, Byeong-Hoon;Lee, Kab Yeon;Song, Jeong Ho;Hur, Seong Doo;Lee, Jung Joo
    • Journal of Korean Society of Forest Science
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    • v.97 no.2
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    • pp.144-151
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    • 2008
  • Using 8 isozyme polymorphic loci as gene markers, we studied the spatial distribution of genotypes in a naturally regenerated uneven-aged Eastern Siberian Fir (Abies nephrolepis Max.) stand (1ha, $100{\times}100m$) on Mt. Ohdae in northeastern South Korea. Gregorius' distograms and Moran's I correlograms revealed no evidence of significant genetic structure at three spatial classes of 5 m, 10 m, and 20 m. Extensive gene flow, due to the long distance dispersal of pollen and seeds in A. nephrolepis, may account for the lack of fine-scale spatial structure. Alternatives would be overlapping seed shadows caused by high densities of A. nephrolepis adult trees (160 trees/ha) and/or intraspecific competition resulting in extensive thinning within maternal half-sib groups.

Spatial Autocorrelation Analysis among Subpopulations of Salix koriyanagi in Swampy Area at the Namgang River, Korea (남강 습지에 분포하는 키버들 집단의 공간적 상관 분석)

  • Huh, Man-Kyu
    • Journal of Life Science
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    • v.18 no.10
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    • pp.1325-1330
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    • 2008
  • Salix koriyanagi is a deciduous shrub and native to Korea. The spatial distribution of multilocus allelic frequencies and geographical distances of the natural population in upper swampy area at the Namgang River in Korea were studied. The species showed a significant positive and negative spatial autocorrelation according to geographical distances as measured by Moran's I. Genetic similarity of individuals was found among subpopulations at up to a scale of a 12 m distance, and this was partly due to a combination of allelic frequencies, and therefore, a significant spatial autocorrelation was composed of a scale of 12 m intervals. Within S. koriyanagi in swampy area at the Namgang River, a strong spatial structure was observed for allozyme markers, indicating a migration within subpopulations.

Allozyme Diversity and Population Genetic Structure in Korean Endemic Plant Species : II. Hosta yingeri (Liliaceae)

  • Chung, Myong Gi
    • Journal of Plant Biology
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    • v.37 no.2
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    • pp.141-149
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    • 1994
  • Levels of genetic diversity, population genetic structure, and gene flow in Hosta yingeri, a herbaceous perennial endemic to Taehuksan, Sohuksan, and Hong Islands, were investigated. Starch gel electrophoresis was conducted on leaves for 101 plants collected from three populations. Although the distribution of thespecies is restricted in the islands, it maintains high levels of genetic variatin; 64% of polymorphic loci in at least one population (Ps), the mean number of alleles per locus (Ap) of 1.92, and the mean effective number of alleles per locus (Aep) of 1.52. Overall, mean genetic diversity (Hep=0.250) was substantially higher than mean estimate for species with very similarlife history traits (0.102). Large populaton size, the persistence of multiple generations within populations, high fecundity, predominantly outcrossing breeding system, large size of pollinator visitation areas may be explanatory factors contributing the higher level of genetic diversity maintained within populations. Analysis of fixation indices showed an overall slight excess of heterozygotes (mean FIS=-0.066) relative to Hardy-Weinberg expectations, which may in part be due to the near self-incompatible breeding system in the species. Significant differences in allele frequencies among populaitns were found for 14 out of 16 polymorphic loci (P<0.05). Slightly more than 80% of the total variation in the species was common to all populations (GST=0.198). As expected, indirect estimate of the number of migrants per generation (Nm=0.45, calculated from mean GST) and nine private alleles found in the three populations indicate that gene movement among three isolated island populations was low.

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