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네트워크 약리학을 활용한 메니에르병에 대한 이진탕(二陳湯)의 활성 성분과 치료 기전 연구(II) (Analysis of the Active Compounds and Therapeutic Mechanisms of Yijin-tang on Meniere's Disease Using Network Pharmacology(II))

  • 진선경;남혜정
    • 한방안이비인후피부과학회지
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    • 제36권2호
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    • pp.1-9
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    • 2023
  • Objectives : This study used a network pharmacology approach to analyze the treatment mechanisms of Yijin-tang on Meniere's disease, and comparative analysis the treatment mechanisms of drugs recommended in the Meniere's disease treatment guidelines. Methods : We collected information on the recommended drugs from the Meniere's disease treatment guidelines and their target proteins were screened via the STITCH database. The intersection targets were obtained through Venny 2.1.0. Gene Ontology(GO) analysis and Kyoto Encyclopedia of Genes and Genomes(KEGG) pathway analysis were performed using ClueGO. Results : The 7 proteins(TNF, CASP9, PARP1, CCL2, CFTR, NOS2, NOS1) were associated with both Yijin-tang and Meniere's disease related genes. The 10 proteins(AQP2, KCNE1, AQP1, AVP, ACE, HRH1, HRH3, NOS1, CA1, CFTR) were associated with both the recommended drugs in the guidelines and Meniere's disease related genes. The 2 proteins(CFTR, NOS1) were common across all three groups. Further, GO/KEGG pathway analysis of the collected proteins revealed that the common mechanisms of action between Yijin-tang and the recommended drugs in the guidelines were related to pathways involving immune dysfunction and disturbances in lymphatic fluid homeostasis. In addition, the recommended drugs in the guidelines appeared to act through mechanisms that improve blood flow through vasodilation. Conclusions : Pharmacological network analysis can help to explain the treatment mechanisms of Yijin-tang on Meniere's disease.

중풍 환자의 경직에 있어서 전침 치료 효과에 대한 체계적 고찰 (Systematic Review of Efficacy of Electroacupuncture for Spasticity because of Stroke)

  • 고호연;공경환;신미란;장명웅;박선주;박정수;장보형;이주아;고성규;전찬용
    • 대한중풍순환신경학회지
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    • 제12권1호
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    • pp.61-67
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    • 2011
  • Background : Prevalence of spasticity because of stroke are 40% patients after 12 month. Spasticity caused decrease of range of motor, motor function, and active daily living. Electroacupuncture widely used stroke. But it is been studied by systematic review between spasticity and electroacupuncture. This study is aimed to efficacy of electroacupuncture for spasticity because of stroke. Methods : We had used pubmed(www.pubmed.com) and cochrane library(www.thecochranelibrary.com) database. Limits are'human','randomized controlled trial'and'all adult 19+ years'in pubmed. The period was until 15, september, 2011. We used MeSH(Medical Subject Headings terms. The search words were'stroke'[mesh],'muscle spasticity'[mesh and 'electroacupuncture'[mesh]. In cochrane library, we used spasticity and electroacupuncture in cochrane library. We found 19 studies. But only 3 studies were included for inclusion criteria. Results : The appropriate 3 studies were different from subject, acupoint, duration of treatment, endpoint and etc. But these studies were effective for spasticity because of stroke. Conclusion : These studies were not meta analysis because of heterogeneity. But the above results might explain the electroacupuncture were effective for spasticity and further study needed to verify and standard electroacupuncture study for spasticity.

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In silico annotation of a hypothetical protein from Listeria monocytogenes EGD-e unfolds a toxin protein of the type II secretion system

  • Maisha Tasneem;Shipan Das Gupta;Monira Binte Momin;Kazi Modasser Hossain;Tasnim Binta Osman;Fazley Rabbi
    • Genomics & Informatics
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    • 제21권1호
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    • pp.7.1-7.11
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    • 2023
  • The gram-positive bacterium Listeria monocytogenes is an important foodborne intracellular pathogen that is widespread in the environment. The functions of hypothetical proteins (HP) from various pathogenic bacteria have been successfully annotated using a variety of bioinformatics strategies. In this study, a HP Imo0888 (NP_464414.1) from the Listeria monocytogenes EGD-e strain was annotated using several bioinformatics tools. Various techniques, including CELLO, PSORTb, and SOSUIGramN, identified the candidate protein as cytoplasmic. Domain and motif analysis revealed that the target protein is a PemK/MazF-like toxin protein of the type II toxin-antitoxin system (TAS) which was consistent with BLASTp analysis. Through secondary structure analysis, we found the random coil to be the most frequent. The Alpha Fold 2 Protein Structure Prediction Database was used to determine the three-dimensional (3D) structure of the HP using the template structure of a type II TAS PemK/MazF family toxin protein (DB ID_AFDB: A0A4B9HQB9) with 99.1% sequence identity. Various quality evaluation tools, such as PROCHECK, ERRAT, Verify 3D, and QMEAN were used to validate the 3D structure. Following the YASARA energy minimization method, the target protein's 3D structure became more stable. The active site of the developed 3D structure was determined by the CASTp server. Most pathogens that harbor TAS create a crucial risk to human health. Our aim to annotate the HP Imo088 found in Listeria could offer a chance to understand bacterial pathogenicity and identify a number of potential targets for drug development.

사이버교과서박물관 데이터베이스 구축에 관한 사례 연구 (A Case Study on the Construction of Cyber Textbook Museum Database)

  • 김은주;이명희
    • 한국비블리아학회지
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    • 제20권4호
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    • pp.67-84
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    • 2009
  • 이미 발행된 교과서를 대상으로 원문 데이터베이스를 구축하고 서비스를 제공하기까지 교과서 표현 메타데이터 정의, 원문 파일 포맷의 정의, 시스템의 개발과 이를 구체적으로 구축한 사례를 정부의 지식자원관리사업의 일환으로 구축된 한국교육개발원의 '사이버교과서박물관' 구축사례를 통해 알아보았다. 사이버교과서박물관에서는 1890년대 이후 국내에서 제작된 교과서를 데이터베이스화하여 온라인상에서 열람 및 이용이 가능하게 하였다. 시스템 구축은 주요 기능을 중심으로 홈페이지 구축, 검색시스템의 개발, 교과서 원문서비스의 저작권에 따른 원문관리시스템의 구축, 서비스하는 교과서의 저작권을 보호하기 위한 저작권 관리시스템(DRM)의 개발에 이르기까지 교과서 자료의 특수성에 따른 시스템 개발상에서의 차별적인 요소를 중심으로 소개하였다. 정책적, 기술적, 제도적, 활성화 안의 4가지 측면에서 방안을 제시하였다.

체계적 문헌 고찰을 통한 패션 제품의 친환경 CMF 디자인 프로세스 분석 (A Systematic Review of Eco-CMF Design Processes for Fashion Products)

  • 이소현;강수경;박성진;고영아;박주연
    • 한국의류산업학회지
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    • 제25권1호
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    • pp.1-10
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    • 2023
  • An eco-CMF design process is vital to the sustainable development of fashion products concerning both emotional and physical quality factors, thus extending the use phase of the product life cycle. Life cycle assessment (LCA) is widely used in other fields to evaluate environmental impact; However, the method is rarely adopted in fashion. While cooperating with design, technology, and the users, reflecting the CMF design process is an excellent approach to the sustainable development of fashion products. Moreover, it is likely to evoke favorable reactions in users toward products. Therefore, this study aimed to review the sustainable design strategies associated with CMF in the fashion industry. Using a systematic review, 135 papers that met the inclusion criteria were examined from peer-reviewed journal articles published between 1990 and 2022. They contained specific design processes or tools relevant to eco-CMF design. The search used the Web of Science database. After a rigorous search, the final six peer-reviewed journal articles were selected and underwent thorough content reviews. Then, the CMF design tools and frameworks for eco-design featured in the articles were carefully reviewed and analyzed. Finally, we proposed practical guidelines for the sustainable development of eco-CMF design in the fashion industry. The study outcomes revealed the need for concrete eco-CMF design processes, particularly for fashion products. Furthermore, more active research involving eco-CMF design processes for the sustainable environmental impact of fashion products is required.

운전 중 EEG 측정을 위한 생체의료기기의 기술 및 연구동향 분석 (Analysis of Technology and Research Trends in Biomedical Devices for Measuring EEG during Driving)

  • 이기현;정영진
    • 한국방사선학회논문지
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    • 제17권7호
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    • pp.1179-1187
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    • 2023
  • 최신 이동수단 발달과 관련하여 다양한 생체 신호 및 의료영상 측정용 의료기술 개발이 활발히 이루어 지고 있다. 특히, 인지/신경과학 분야에서 뇌파(electroencephalography, EEG) 측정의 중요성과 이동 중 차량에서의 정확한 뇌파 측정기술 개발은 매우 도전적인 분야이다. 본 연구에서는, 운전 중 뇌파를 이용한 기술에 대해 광범위하게 조사하고, 기술 연구의 동향을 분석하고자 하였다. 이를 위해, Scopus 데이터베이스를 활용하여 2000년 이후 진행된 뇌파 관련 연구를 탐색하였으며, 약 40여편의 논문을 선정하였다. 이를 통해 신호처리 기술, EEG 측정 디바이스 개발, 차량 내 운전자 상태 모니터링 기술의 현재 동향과 미래 방향을 조명하였다. 또한, 이를 위한 초소형 32채널 뇌파 측정 시스템을 설계해 보았으며, 간단히 이를 구현하여 뇌파 신호를 측정 분석함으로써 검토해 보았다. 본 연구는 운전 중 생체신호 측정 및 분석 기술이 자율주행 시대에 맞추어 운전자 케어와 건강 모니터링에 기여할 것으로 기대한다.

자폐 스펙트럼 장애 아동의 섭식 문제에 대한 중재의 국외 문헌 연구 (A Literature Review on Overseas Intervention Study for Feeding Problems in Children with Autism Spectrum Disorders)

  • 김지원;안선정
    • 대한통합의학회지
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    • 제12권2호
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    • pp.101-110
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    • 2024
  • Purpose : The purpose of this study provided an overview of the general status and recent intervention approaches in overseas research related to feeding problems in children with autism spectrum disorder (ASD). This review aims to explore interventions for feeding problems in order to provide higher quality follow-up research directions and implications, particularly focusing on providing recommendations for future research in the context of domestic studies. Methods : Analyzing studies published in international journals from 2017 to 2023. This review involved six selected articles, through Embase, Pubmed, RISS, KISS database search engine. A literature analysis that includes inclusion and exclusion criteria, six selected articles were examined. The literature analysis categorized the general status of the research and intervention approaches and treatment components into intervention, treatment settings and therapists, and dependent variables, respectively. Results : Among feeding intervention approaches, parent education interventions based on behavioral therapy had the highest proportion, followed by multidisciplinary interventions. To maintain the effectiveness of interventions over the long term and to generalize them to the home environment, parent education that utilizes parents as mediators is considered a crucial factor. The most commonly observed effects as dependent variables were changes in the consumption of disliked foods, health foods and alterations in feeding behavior. Conclusion : This study introduces various intervention approaches for addressing feeding problems in children with autism spectrum disorder (ASD), focusing on the positive effects demonstrated by active intervention research in abroad. Furthermore, it underscores the need for additional research in Korea to validate the efficacy of these feeding intervention methods. Lastly, the study outlines future research directions aimed at developing feeding programs to support children with ASD and their families coping with feeding issues.

Association Between Persistent Treatment of Alzheimer's Dementia and Osteoporosis Using a Common Data Model

  • Seonhwa Hwang;Yong Gwon Soung;Seong Uk Kang;Donghan Yu;Haeran Baek;Jae-Won Jang
    • 대한치매학회지
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    • 제22권4호
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    • pp.121-129
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    • 2023
  • Background and Purpose: As it becomes an aging society, interest in senile diseases is increasing. Alzheimer's dementia (AD) and osteoporosis are representative senile diseases. Various studies have reported that AD and osteoporosis share many risk factors that affect each other's incidence. This aimed to determine if active medication treatment of AD could affect the development of osteoporosis. Methods: The Health Insurance Review and Assessment Service provided data consisting of diagnosis, demographics, prescription drug, procedures, medical materials, and healthcare resources. In this study, data of all AD patients in South Korea who were registered under the national health insurance system were obtained. The cohort underwent conversion to an Observational Medical Outcomes Partnership-Common Data Model version 5 format. Results: This study included 11,355 individuals in the good persistent group and an equal number of 11,355 individuals in the poor persistent group from the National Health Claims database for AD drug treatment. In primary analysis, the risk of osteoporosis was significantly higher in the poor persistence group than in the good persistence group (hazard ratio, 1.20 [95% confidence interval, 1.09-1.32]; p<0.001). Conclusions: We found that the good persistence group treated with anti-dementia drugs for AD was associated with a significant lower risk of osteoporosis in this nationwide study. Further studies are needed to clarify the pathophysiological link in patients with two chronic diseases.

In silico 약리학적 분석을 통한 티모사포닌 A III의 5-베타 리덕타아제 단백질 및 안드로겐 수용체 단백질 활성 부위에 대한 결합 친화도 비교 연구 (Pharmacological Comparison of Timosaponin A III on the 5-beta Reductase and Androgen Receptor via In Silico Molecular Docking Approach)

  • 김동찬
    • 생명과학회지
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    • 제28권3호
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    • pp.307-313
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    • 2018
  • 탈모증상은 겉으로 보이는 모습으로 인해 정신적인 스트레스로 작용한다. 그래서 탈모 방지관련 제품의 글로벌 시장 규모는 지속적으로 성장하고 있다. Timosaponin A III는 지모 추출물에서 발견되는 대표적인 saponin 계열의 생리 활성 효능 성분이다. 본 연구에서는 5-beta reductase 단백질 길항제(antagonist) finasteride, androgen receptor 단백질 길항제 minoxidil, 그리고 지모 추출물의 효능 성분 timosaponin A III의 각각의 타깃 단백질 활성 부위에 대한 친화도 분석 실험을 in silico 컴퓨터 분자결합 분석 방법을 통해 비교하였다. 5-beta reductase 및 androgen receptor 의 3차원 구조 정보는 PDB database (5-beta reductase PDB ID: 3G1R / androgen receptor PDB ID:4K7A)를 활용하였다. In silico 결합 분석을 수행하기 위해 PyRx, Autodock Vina, Discovery Studio Version 4.5, and NX-QuickPharm 프로그램을 각 분석 조건에 따라 활용하였다. 5-beta reductase 활성 부위에 대한 timosaponin A III의 최대 결합친화도는 -12.20 kcal/mol으로 나왔으며 이는 -11.70 kcal/mol으로 분석된 finasteride의 5-beta reductase 활성부위에 대한 결합 친화도 보다 훨씬 더 높고 효율적인 것으로 분석되었다. Androgen receptor 활성 부위에 대한 timosaponin A III의 최대결합친화도 또한 -9.00 kcal/mol으로 -7.40 kcal/mol의 minoxidil에 비하여 훨씬 우수한 결합친화도 값을 나타내었다. Finasteride와 timosaponin A III의 5-beta reductase 단백질 활성 부위에 대한 X,Y,Z Grid 값은 유사한 좌표로 분석되었으나 minoxidil과 timosaponin A III의 androgen receptor 활성 부위에 대한 X,Y,Z centroid grid 좌표는 상당한 거리를 두고 떨어져 있음이 확인 되었다. 즉, timosaponin A III는 minoxidil이 androgen receptor에 결합하는 부위와는 다른 부위에 결합하여 단백질 활성에 영향을 주는 것으로 사료되었다. 이상의 연구 결과들을 바탕으로 분석해 볼 때, 5-beta reductase 길항제 finasteride와 androgen receptor 길항제 minoxidil보다 지모 추출물 생리 활성 물질인 timosaponin A III가 보다 더 효율적인 길항제로 작용할 수 있음을 확인하였다. 결론적으로 지모 추출물 또는 timosaponin 계열이 함유된 효능 성분은 탈모 방지 효능 및 모발 건강 개선을 위한 의약품, 의약외품 및 신물질 연구 개발 분야에 효율적으로 활용할 수 있을 것으로 사료된다.

Cloning and Expression of the Cathepsin F-like Cysteine Protease Gene in Escherichia coli and Its Characterization

  • Joo, Han-Seung;Koo, Kwang-Bon;Park, Kyun-In;Bae, Song-Hwan;Yun, Jong-Won;Chang, Chung-Soon;Choi, Jang-Won
    • Journal of Microbiology
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    • 제45권2호
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    • pp.158-167
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    • 2007
  • In this study, we have cloned a novel cDNA encoding for a papain-family cysteine protease from the Uni-ZAP XR cDNA library of the polychaete, Periserrula leucophryna. This gene was expressed in Escherichia coli using the T7 promoter system, and the protease was characterized after partial purification. First, the partial DNA fragment (498 bp) was amplified from the total RNA via RT-PCR using degenerated primers derived from the conserved region of cysteine protease. The full-length cDNA of cysteine protease (PLCP) was prepared via the screening of the Uni-ZAP XR cDNA library using the $^{32}P-labeled$ partial DNA fragment. As a result, the PLCP gene was determined to consist of a 2591 bp nucleotide sequence (CDS: 173-1024 bp) which encodes for a 283-amino acid polypeptide, which is itself composed of an 59-residue signal sequence, a 6-residue propeptide, a 218-residue mature protein, and a long 3'-noncoding region encompassing 1564 bp. The predicted molecular weights of the preproprotein and the mature protein were calculated as 31.8 kDa and 25 kDa, respectively. The results of sequence analysis and alignment revealed a significant degree of sequence similarity with other eukaryotic cysteine proteases, including the conserved catalytic triad of the $Cys^{90},\;His^{226},\;and\;Asn^{250}$ residues which characterize the C1 family of papain-like cysteine protease. The nucleotide and amino acid sequences of the novel gene were deposited into the GenBank database under the accession numbers, AY390282 and AAR27011, respectively. The results of Northern blot analysis revealed the 2.5 kb size of the transcript and ubiquitous expression throughout the entirety of the body, head, gut, and skin, which suggested that the PLCP may be grouped within the cathepsin F-like proteases. The region encoding for the mature form of the protease was then subcloned into the pT7-7 expression vector following PCR amplification using the designed primers, including the initiation and termination codons. The recombinant cysteine proteases were generated in a range of 6.3 % to 12.5 % of the total cell proteins in the E. coli BL21(DE3) strain for 8 transformants. The results of SDS-PAGE and Western blot analysis indicated that a cysteine protease of approximately 25 kDa (mature form) was generated. The optimal pH and temperature of the enzyme were determined to be approximately 9.5 and $35^{\circ}C$, respectively, thereby indicating that the cysteine protease is a member of the alkaline protease group. The evaluation of substrate specificity indicated that the purified protease was more active towards Arg-X or Lys-X and did not efficiently cleave the substrates with non-polar amino acids at the P1 site. The PLCP evidenced fibrinolytic activity on the plasminogen-free fibrin plate test.