• Title/Summary/Keyword: Y2H library

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Frankia sp. strain SNU 014201의 nif-H, D, K, 유전자 클로닝

  • 권석윤;강명수;안정선
    • Korean Journal of Microbiology
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    • v.30 no.1
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    • pp.30-36
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    • 1992
  • nif (nitrogen fixation)-H.D, K genes of Frankia sp. SNU 014201. a symbiotic strain isolated from root nodule of Alnus hirsura, were found to be located in the genome on 13.5 kb of EcoRI, 18.0 kb of BamHI, 10.5 kb of BglII and 4.5 kb of KpnI fragments. Using EMBL-3 BamHI arms of bacteriophage lambda. the genomic library was constructed. from which fourteen recombinant phage nif-clones were selected. Among them, Ahnif-I2 had insert DNA of 18 kb, in which 7.9 kb of BamHl fragment contained nif-H, D, K and 3.6 kb of HindlIl/KpnI had nif-H and partial -D. Therefore, the 7.9 kb and 3.6 kb fragments were subcloned and partial restriction maps were constructed. As the results, nif-F1, D.K genes were found to be located continuously on the 6.5 kb of HindII/BamHI and 5.2 kb of SalIIBamHI fragment in the genome of Frankia sp. SNU 014201.

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Theoretic Background of TQM and Application for Library (TQM의 이론적 배경과 도서관 적용)

  • 이상복
    • Journal of Korean Library and Information Science Society
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    • v.31 no.4
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    • pp.213-237
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    • 2000
  • The pnpose of the study is to offa the basic data in TQM dcation Ilndel fca h i thrcugh investjga!iOn of m s tlxm-dic hackgnxnd, such as philosophy, pincides, mil2 am?s, aL&atirn mlhods and d y s i s of TQM &cation for h i . For this pnpose, phil&y and pinddes that reprrsentive quality expats in America and jam^, such as bring, Juran, G-osby, Ishkawa, M, wae investigated

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Repeated Random Mutagenesis of ${\alpha}$-Amylase from Bacillus licheniformis for Improved pH Performance

  • Priyadharshini, Ramachandran;Manoharan, Shankar;Hemalatha, Devaraj;Gunasekaran, Paramasamy
    • Journal of Microbiology and Biotechnology
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    • v.20 no.12
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    • pp.1696-1701
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    • 2010
  • The ${\alpha}$-amylases activity was improved by random mutagenesis and screening. A region comprising residues from the position 34-281 was randomly mutated in B. licheniformis ${\alpha}$-amylase (AmyL), and the library with mutations ranging from low, medium, and high frequencies was generated. The library was screened using an effective liquid-phase screening method to isolate mutants with an altered pH profile. The sequencing of improved variants indicated 2-5 amino acid changes. Among them, mutant TP8H5 showed an altered pH profile as compared with that of wild type. The sequencing of variant TP8H5 indicated 2 amino acid changes, Ile157Ser and Trp193Arg, which were located in the solvent accessible flexible loop region in domain B.

Isolation and Characterization of the nsdC Gene in Sexual Development of Aspergillus nidulans (Aspergillus nidulans의 유성분화에 관여하는 nsdC 유전자의 분리 및 분석)

  • Kim, Hye-Ryun;Han, Dong-Min
    • Korean Journal of Microbiology
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    • v.42 no.4
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    • pp.246-251
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    • 2006
  • A lot of mutants which cannot initiate sexual development were screened and several loci including nsdA, nsdB, nsdC, and nsdD were identified in homothallic ascomycetes Aspergillus nidulans. The NSD206, which has nsdC6 allele, showed typical phenotype of NSD (Never in sexual development) mutants. The nsdC gene was cloned by transforming NSDP697 ($nsdC^-$, $pryG^-$) with AMA1-NotI genomic library. The transforming library DNA recovered from several transformants showing wild phenotype carried about 10 kb genomic DNA insert. The DNA sequence of nsdC was analysed using GPS (Genome priming system). The nsdC gene has an open reading frame (ORF) of 1,929 bp encoding a putative polypeptide of 643 amino acids. The NsdC carries $C_2H_2C_2H_2C_2HC$ type zinc finger DNA binding domains in the middle of the polypeptide. A coiled-coil domain at its C terminus were also found. In nsdC6 allele, a single T insertion was occurred between 407-408 bp leading to the frameshift mutation and early termination of translation producing the truncated protein which has only 139 amino acids.

A Study on Document Citation Indicators Based on Citation Network Analysis (인용 네트워크 분석에 근거한 문헌 인용 지수 연구)

  • Lee, Jae-Yun
    • Journal of the Korean Society for Library and Information Science
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    • v.45 no.2
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    • pp.119-143
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    • 2011
  • This study identifies the characteristics of recent citation-based indicators for assessing a single paper in the context of their co-relationships. Five predefined indicators were examined with three variants of h-index which are convened in this study; the formers are PageRank, SCEAS Rank, CCI, f-value, and single paper h-index and the latters are $h_S$-index, h1-index, and $h_S$1-index. The correlation analysis and cluster analysis were performed to group the indicators by common characteristics, after which the indicators were calculated with the dataset from KSCI DB. The results show statistical evidence that distinguishes h-index type indicators from others. The characteristics of the indicators were verified with citation frequency factors using correlation analysis. Finally, the implications for applications and further studies are discussed.

Construction of a Large Synthetic Human scFv Library with Six Diversified CDRs and High Functional Diversity

  • Yang, Hye Young;Kang, Kyung Jae;Chung, Julia Eunyoung;Shim, Hyunbo
    • Molecules and Cells
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    • v.27 no.2
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    • pp.225-235
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    • 2009
  • Antibody phage display provides a powerful and efficient tool for the discovery and development of monoclonal antibodies for therapeutic and other applications. Antibody clones from synthetic libraries with optimized design features have several distinct advantages that include high stability, high levels of expression, and ease of downstream optimization and engineering. In this study, a fully synthetic human scFv library with six diversified CDRs was constructed by polymerase chain reaction assembly of overlapping oligonucleotides. In order to maximize the functional diversity of the library, a ${\beta}$-lactamase selection strategy was employed in which the assembled scFv gene repertoire was fused to the 5'-end of the ${\beta}$-lactamase gene, and in-frame scFv clones were enriched by carbenicillin selection. A final library with an estimated total diversity of $7.6{\times}10^9$, greater than 70% functional diversity, and diversification of all six CDRs was obtained after insertion of fully randomized CDR-H3 sequences into this proofread repertoire. The performance of the library was validated using a number of target antigens, against which multiple unique scFv sequences with dissociation constants in the nanomolar range were isolated.

Quality Factor: A new Bibliometric Measure for Assessing the Quality of Faculty Research Performance (Quality Factor: 교수연구업적평가를 위한 새로운 계량 지표)

  • Choi, Eun-Ju;Yang, Kiduk;Lee, Hye-Kyung
    • Journal of Korean Library and Information Science Society
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    • v.47 no.2
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    • pp.287-304
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    • 2016
  • This paper introduces a new bibliometric measure called Quality Factor, which assesses multiple facets of faculty research performance. The computation of Quality factor is based on a combination of publication count, citation count, h-index, and Impact Factor. In order to analyze the relationship between Quality Factor and other bibliometric measures (publication count, citation count, h-index, g-index, Impact Factor), the study collected publication data of 189 Korean Library and Information Science professors from 2001 to 2014 to produce the rankings of the faculty by each bibliometric measure and computed Spearman's rank correlations between the rankings. The overall results showed Quality Factor to be correlated to citation-driven measures (citation count, h-index, g-index), but the scatterplot as well as rank-interval analysis showed Quality Factor to be distinctive and more discriminating than other measures.

A bibliographical study on the christianity newspaper related to Korea (한국 기독교 관련 신문의 서지적 분석)

  • 임동빈
    • Journal of Korean Library and Information Science Society
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    • v.22
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    • pp.95-137
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    • 1995
  • Christianity Newspapers related to Korea was started from 'The Christian Advocate' launched in 1897 by A ppenzeller, H.G, American. From here, through the division of the newspaper related to Korean Christianity, the periodic background of the time, contents of the newspaper published and the bibliographic feature are as follows. 1. The time of Introduction (1885-1910) 2. The time of Establishment (1911-1934) 3. The time of sufferings (1935-1945) 4. The time of upheaval (1946-1960) 5. The time of preparation

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Engineering CotA Laccase for Acidic pH Stability Using Bacillus subtilis Spore Display

  • Sheng, Silu;Jia, Han;Topiol, Sidney;Farinas, Edgardo T.
    • Journal of Microbiology and Biotechnology
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    • v.27 no.3
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    • pp.507-513
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    • 2017
  • Bacillus subtilis spores can be used for protein display to engineer protein properties. This method overcomes viability and protein-folding concerns associated with traditional protein display methods. Spores remain viable under extreme conditions and the genotype/phenotype connection remains intact. In addition, the natural sporulation process eliminates protein-folding concerns that are coupled to the target protein traveling through cell membranes. Furthermore, ATP-dependent chaperones are present to assist in protein folding. CotA was optimized as a whole-cell biocatalyst immobilized in an inert matrix of the spore. In general, proteins that are immobilized have advantages in biocatalysis. For example, the protein can be easily removed from the reaction and it is more stable. The aim is to improve the pH stability using spore display. The maximum activity of CotA is between pH 4 and 5 for the substrate ABTS (ABTS = diammonium 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate). However, the activity dramatically decreases at pH 4. The activity is not significantly altered at pH 5. A library of approximately 3,000 clones was screened. A E498G variant was identified to have a half-life of inactivation ($t_{1/2}$) at pH 4 that was 24.8 times greater compared with wt-CotA. In a previous investigation, a CotA library was screened for organic solvent resistance and a T480A mutant was found. Consequently, T480A/E498G-CotA was constructed and the $t_{1/2}$ was 62.1 times greater than wt-CotA. Finally, E498G-CotA and T480A/E498G-CotA yielded 3.7- and 5.3-fold more product than did wt-CotA after recycling the biocatalyst seven times over 42 h.