• Title/Summary/Keyword: Varietal distance

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Mutivariate Analysis on Quantitative Characteristics of Prunus mume (매실의 다변량에 의한 양적 형질 분석)

  • Choi, Gab Lim;Hyun, Kyu-Hwan;Shin, Dong Young
    • Korean Journal of Plant Resources
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    • v.27 no.1
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    • pp.89-94
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    • 2014
  • Varietal distances were measured by Mahalanobis's $D^2$ statistics in 190 possible comparisons among twenty varieties of Prunus mume with twelve characters such as seed weight, length, width, and diameter, fruit weight, and number of sepals, petals, pistils, and stigmas, and leaf length and width. A complete linkage cluster analysis based on the Mahalanobis's distance ($D^2$) was attempt. Twenty varieties of Prunus mume were largely classified into five subgroups. Group I, II, III, IV and V included two, four, five, five and four varieties, respectively. Most of the varietal groups were not associated with their geographical origins. Number of stigmas, and leaf length and width among the twelve characters were the largest contributors to the $D^2$ in both intra-and inter groups.

Varietal Difference of Leaf Breakdown in Field of Flue-Cured Tobacco (Nicotiana tabacum L.) (황색종 연초(Nicotiana tabacum L.)에서 엽탈락의 품종간 차이)

  • 조수헌
    • Journal of the Korean Society of Tobacco Science
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    • v.10 no.2
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    • pp.93-98
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    • 1988
  • This study was conducted to obtain basic information for varietal difference of leaf breakdown in field of flue-cured tobacco at Taegu Experiment Station, Korea Ginseng & Tobacco Research Institute in 1987. The experiment was designed in randomized block with 3 replications, data ware analysed as Split split-plot design. Main plots were varieties, sub-plots were leaf positions, 4, 5 and 6th from bottom, and each sub-plot was divided into 3 parts with distance of midrib, 7 10 and 13em from stalk. Four varieties, NC 95, NC 2326, NC 82 and BY 4 were transplanted in 15 April, and measured the weight of leaf breakdown by artificially weighted in 5 June. The results obtained are as follows : 1. Weights of leaf breakdown according to leaf position, NC 95 were lower as 358-5799 than those of other varieties as 555-597g, were not significantly different regardless of varieties. 2. Weights of leaf breakdown in relation to distance of midrib from stack, NC 95 were lower as 309-419g than those of other varieties as 472-710g. 3. Weights of leaf breakdown were significantly different according to distance of midrib from stalk, and not significantly different according to leaf position under the same distance of midrib from stalk regardless of varieties.

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Multivariate Analysis of Quantitative Characteristics in Alisma plantago L. (택사(澤瀉)의 양적(量的) 형질(形質)에 대한 다변량(多變量) 분석(分析))

  • Kwon, Byung-Sun;Lim, June-Taeg
    • Korean Journal of Medicinal Crop Science
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    • v.5 no.4
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    • pp.260-265
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    • 1997
  • Varietal distances were measured by Euclidian $D^2$ statistics in 1, 891 possible comparisons among sixty two varieties of Alisma plantago with seven characters such as leaf width, leaf length, stem length, number of stems per plant, root diameter, and yield of fresh and dry root. A complete linkage cluster analysis based on the Euclidian distance $(D^2)$ was attempted. Sixty two cultivars of Alisma plantago were largely classified into five subgroups. Group 1, 2, 3, 4 and 5 included twelve, twenty one, seventeen, five and seven cultivars, respectively. Most of the varietal groups were not associated with their geographical origins. Stem length and root weight among the seven characters were the largest contributors to the $D^2$ in both intra- and inter- groups.

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Varietal Classification by Multivariate Analysis in Job′s Tears (Coix lachryma-jobi L. var. mayuen STAPF) (다변량 해석법에 의한 율무의 품종군 분류)

  • 권병선;박희진
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.35 no.2
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    • pp.126-131
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    • 1990
  • Sixty two Job's Tear cultivars were largely classified into ten varietal groups and every varieties. except for Group V forming the Group by one variety. uniformly formed the Groups. From Group I to Group Ⅹ respectively contained three(5%), eighteen(29%), five(8%), thirteen(21%), one(2%), five(8%), seven(11%), four(7%), two(3%) and four(7%) varieties. Group II and Group IV showed considerably large variation whereas Group Ⅷ, IV and Ⅹ showed low variation and inferiority in vigorosity and yield components. Most of the varietal Group were not associated with their geographical origin. Days to flowering and plant height among the nine characters were the largest contributors to the D$^2$ in both inter- and inter groups.

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Varietal Difference Based on Efficiency of Rice Anther Floating Culture

  • Kang, Hyeon-Jung;Lee, Seong-Yeob;Kim, Hyun-Soon;Lee, Jae-Gil
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.47 no.5
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    • pp.335-340
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    • 2002
  • To evaluate the efficiency of anther floating culture according to the maturing group, the varietal difference and classification of fifty varieties was conducted in N6 liquid medium containing 1mg $l^{-1}$ NAA, 0.25 mg $l^{-1}$ kinetin. The efficiency of callus induction was widely ranged from 0 to 113.4%, but the mean callus induction was not significantly different among maturing groups. The efficiency of anther floating culture showed the highest variation in early-maturing group among three maturing groups. The varieties with the best callus induction were Sambaegbyeo and Jinbuolbyeo, while the recalcitrant variety was Obongbyeo in early-maturing group. The efficiency of plant regeneration showed the highest trends in late-maturing group among three maturing groups. The fifty varieties were classified into three groups (distance=0.78) by cluster analysis based on the callus formation and plant regeneration. Group including only two varieties, Shinunbongbyeo and Sambaegbyeo had the excellent androgenic efficiency, and the medium efficiency of Group was included thirty-six varieties. Whereas twelve varieties, including three Tongil varieties were fell into the bad efficiency of Group. Especially, Tongil varieties containing Japonica rice, Obongbyeo were the recalcitrant genotypes for the anther floating culture.

Varietal Classification by Multivariate Analysis on Quantitative Traits in Pecan

  • Shin, Dong-Young;Nou, Ill-Sup
    • Plant Resources
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    • v.2 no.2
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    • pp.75-80
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    • 1999
  • Twenty two varieties of pecan including wild types were classified based on 6 characters measured by principal component analysis score distance. The results are summarized as fellow. Twenty two varieties were classified into 5 groups based in PCA score distance. Five groups were distinctly characterized by many morphological characters. Total variation could be explained by 51%, 95%, 99% with first, third and fifth principal components respectively. Varimax rotation of the factor loading of the first factors indicated that the first component was highly loaded with leaf characters, the second component with fruit characters, but fruit length was negative loaded. The second, the third and the fourths groups of cultivars had very close genetic parentage similarity.

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Classification and Selection of the Breeding materials in the Silkworm, Bombyx mori, by Multivariate Analysis 1. Classification of the Silkworm Genetic Stocks by Principal Component Analysis and Cluster Analysis (다변량 해석법에 의한 누에 육종소재의 탐색 1. 주성분분석과 집락분석을 이용한 누에품종분류)

  • 정도섭;이인정
    • Journal of Sericultural and Entomological Science
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    • v.31 no.2
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    • pp.102-112
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    • 1989
  • Principal component analysis and cluster analysis were performed on the nine quantitative characters of the one hundred and forty eight silkworm genetic stocks. The six major quantitative characters such as cocoon yield, cocoon weight, cocoon shell weight, cocoon shell percentage, larval period of the 5th instar silkworm, and total larval period showed significantly positive correlation between them. The first three principal components extracted form the initial nine variables by principal component analysis accounted for about eighty percent of original information. The first and second principal components were characterized as factors related to silk productivity, and cocoon productivity, respectively. On the basis of multivariate analysis using city block distance determined from the first three principal components to measure the phenotypic diversity, the one hundred and forty eight silkworm genetic stocks could be clustered into seven varietal groups, and the phenotypic diversity between the varietal groups was partly related to their geographical origins. Among 7 varietal group, group II and IV revealed higher silk and cocoon productivity.

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Use of Simple Sequence Repeat (SSR) Markers for Variety Identification of Tomato (Lycopersicon esculentum) (Simple Sequence Repeat (SSR) Marker를 이용한 토마토 품종 식별)

  • Kwon, Yong-Sham;Park, Eun-Kyung;Bae, Kyung-Mi;Yi, Seung-In;Park, Soon-Gi;Cho, Il-Ho
    • Journal of Plant Biotechnology
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    • v.33 no.4
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    • pp.289-295
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    • 2006
  • This study was carried out to evaluate the suitability of simple sequence repeat (SSR) markers for varietal identification and genetic diversity in 28 commercial tomato varieties. The relationship between marker genotypes and 28 varieties was analyzed. Of the 219 pairs of SSR primers screened against ten tomato varieties, 18 pairs were highly polymorphic with polymorphism information content (PIC) ranging from 0.467 to 0.800. Among the polymorphic loci, two to nine SSR alleles were detected for each locus with an average of 3.3 alleles per locus. Genetic distances were estimated according to Jaccard's methods based on the probability that the amplified fragment from one genotype would be present in another genotype. These varieties were categorized into cherry and classic fruit groups corresponding to varietal types and genetic distance of cluster ranging from 0.35 to 0.97. The phonogram discriminated all varieties by marker genotypes. The SSR markers proved to be useful variety identification and genetic resource analysis of tomato.

Inter Simple Sequence Repeat (ISSR) Polymorphism and Its Application in Mulberry Genome Analysis

  • Vijayan Kunjupillai
    • International Journal of Industrial Entomology and Biomaterials
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    • v.10 no.2
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    • pp.79-86
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    • 2005
  • Molecular markers have increasingly been used in plant genetic analysis, due to their obvious advantages over conventional phenotypic markers, as they are highly polymorphic, more in number, stable across different developmental stages, neutral to selection and least influenced by environmental factors. Among the PCR based marker techniques, ISSR is one of the simplest and widely used techniques, which involves amplification of DNA segment present at an amplifiable distance in between two identical microsatellite repeat regions oriented in opposite direction. Though ISSR markers are dominant like RAPD, they are more stable and reproducible. Because of these properties ISSR markers have recently been found using extensively for finger printing, pohylogenetic analysis, population structure analysis, varietal/line identification, genetic mapping, marker-assisted selection, etc. In mulberry (Morus spp.), ISSR markers were used for analyzing phylogenetic relationship among cultivated varieties, between tropical and temperate mulberry, for solving the vexed problem of identifying taxonomic positions of genotypes, for identifying markers associated with leaf yield attributing characters. As ISSR markers are one of the cheapest and easiest marker systems with high efficiency in generating polymorphism among closely related varieties, they would play a major role in mulberry genome analysis in the future.

Varietal Classification on the Basis of Cluster Analysis in Burley Tobacco of N. tabacum L. (Cluster분석에 의한 버어리종 담배품종의 분류)

  • Ann, Dai-Jin;Kim, Yoon-Dong
    • Journal of the Korean Society of Tobacco Science
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    • v.5 no.2
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    • pp.25-32
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    • 1983
  • To obtain basic information on the breeding of burley tobacco, classification of 41 varieties was carried out by using the cluster analysis of correlation coefficients and taxonomic distance based on twenty-one agromonic characters. Eight characters, such as days to flowering, length of flower axis, internode length, leaf length, yield, leaf angle to stem, vein angle to midrib and plant height, were useful in monothetic classification. Forty-one varieties were classified into four groups (I, II, III and IV) with weighted variable group method (WVGM ) and weighted jai. group method(WPGM), whereas the results classification of 33 varieties among them by WVGM were coincident with the results by WPGM. As for the characteristics of each group, group I related to late maturity, tall height and high yield, group II related to intermediate maturity, tall height and low yield, group 19 related to early maturity, intermediate height and low yield, and group W related to early maturity, short height and intermediate yield.

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