• 제목/요약/키워드: Testing Procedures

검색결과 590건 처리시간 0.02초

Multiple Group Testing Procedures for Analysis of High-Dimensional Genomic Data

  • Ko, Hyoseok;Kim, Kipoong;Sun, Hokeun
    • Genomics & Informatics
    • /
    • 제14권4호
    • /
    • pp.187-195
    • /
    • 2016
  • In genetic association studies with high-dimensional genomic data, multiple group testing procedures are often required in order to identify disease/trait-related genes or genetic regions, where multiple genetic sites or variants are located within the same gene or genetic region. However, statistical testing procedures based on an individual test suffer from multiple testing issues such as the control of family-wise error rate and dependent tests. Moreover, detecting only a few of genes associated with a phenotype outcome among tens of thousands of genes is of main interest in genetic association studies. In this reason regularization procedures, where a phenotype outcome regresses on all genomic markers and then regression coefficients are estimated based on a penalized likelihood, have been considered as a good alternative approach to analysis of high-dimensional genomic data. But, selection performance of regularization procedures has been rarely compared with that of statistical group testing procedures. In this article, we performed extensive simulation studies where commonly used group testing procedures such as principal component analysis, Hotelling's $T^2$ test, and permutation test are compared with group lasso (least absolute selection and shrinkage operator) in terms of true positive selection. Also, we applied all methods considered in simulation studies to identify genes associated with ovarian cancer from over 20,000 genetic sites generated from Illumina Infinium HumanMethylation27K Beadchip. We found a big discrepancy of selected genes between multiple group testing procedures and group lasso.

Bayesian testing for the homogeneity of the shape parameters of several inverse Gaussian distributions

  • Lee, Woo Dong;Kim, Dal Ho;Kang, Sang Gil
    • Journal of the Korean Data and Information Science Society
    • /
    • 제27권3호
    • /
    • pp.835-844
    • /
    • 2016
  • We develop the testing procedures about the homogeneity of the shape parameters of several inverse Gaussian distributions in our paper. We propose default Bayesian testing procedures for the shape parameters under the reference priors. The Bayes factor based on the proper priors gives the successful results for Bayesian hypothesis testing. For the case of the lack of information, the noninformative priors such as Jereys' prior or the reference prior can be used. Jereys' prior or the reference prior involves the undefined constants in the computation of the Bayes factors. Therefore under the reference priors, we develop the Bayesian testing procedures with the intrinsic Bayes factors and the fractional Bayes factor. Simulation study for the performance of the developed testing procedures is given, and an example for illustration is given.

A Bayesian Hypothesis Testing Procedure Possessing the Concept of Significance Level

  • Hwang, Hyungtae
    • Communications for Statistical Applications and Methods
    • /
    • 제8권3호
    • /
    • pp.787-795
    • /
    • 2001
  • In this paper, Bayesian hypothesis testing procedures are proposed under the non-informative prior distributions, which can be thought as the Bayesian counterparts of the classical ones in the sense of using the concept of significance level. The performances of proposed procedures are compared with those of classical procedures through several examples.

  • PDF

Conditional Confidence Interval for Parameters in Accelerated Life Testing

  • Park, Byung-Gu;Yoon, Sang-Chul
    • Journal of the Korean Data and Information Science Society
    • /
    • 제7권1호
    • /
    • pp.21-35
    • /
    • 1996
  • In this paper, estimation and prediction procedures are discussed for grneral situation in which the failure time follows the independent density $f_{i}({\varepsilon}_{i})$ for the accelerated life testing under Type II censoring. In the context of accelerated life test experiment, procedures are given for estimating the parameters in the Eyring model, and for estimating mean life at a given future stress level. The procedures given are conditional confidence interval procedures, obtained by conditioning on ancillary statistics. A comparison is made of these procedures and procedures based on asymptotic properties of the maximum, likelihood estimates.

  • PDF

Proposed Performance Criteria and Evaluation Procedures for Transmission System Planning in Korea

  • Kook, Kyung-Soo;Kim, Taihyun;Oh, Tae-Kyoo;Bang, Min-Jae
    • KIEE International Transactions on Power Engineering
    • /
    • 제2A권4호
    • /
    • pp.160-165
    • /
    • 2002
  • This paper describes a proposed performance criteria and evaluation procedures for transmission system planning in Korea. Performance criteria of the transmission system are expected to be used as a guideline for investment into a transmission network. Moreover, performance evaluation procedures, which are based on current practices and widely accepted theories, are suggested to achieve fair and acceptable results.

Bayesian hypothesis testing for homogeneity of coecients of variation in k Normal populationsy

  • Kang, Sang-Gil
    • Journal of the Korean Data and Information Science Society
    • /
    • 제21권1호
    • /
    • pp.163-172
    • /
    • 2010
  • In this paper, we deal with the problem for testing homogeneity of coecients of variation in several normal distributions. We propose Bayesian hypothesis testing procedures based on the Bayes factor under noninformative prior. The noninformative prior is usually improper which yields a calibration problem that makes the Bayes factor to be dened up to a multiplicative constant. So we propose the objective Bayesian hypothesis testing procedures based on the fractional Bayes factor and the intrinsic Bayes factor under the reference prior. Simulation study and a real data example are provided.

Bayesian One-Sided Testing for the Ratio of Poisson Means

  • Kang, Sang-Gil;Kim, Dal-Ho;Lee, Woo-Dong
    • Journal of the Korean Data and Information Science Society
    • /
    • 제17권2호
    • /
    • pp.619-631
    • /
    • 2006
  • When X and Y have independent Poisson distributions, we develop a Bayesian one-sided testing procedures for the ratio of two Poisson means. We propose the objective Bayesian one-sided testing procedures for the ratio of two Poisson means based on the fractional Bayes factor and the intrinsic Bayes factor. Some real examples are provided.

  • PDF

STATISTICAL CONCEPTS AND TECHNIQUES FOR TESTING DEPARTURES FROM NORMALITY IN THE MATHEMATICS TEACHER PREPARATION

  • Lee, Sang-Gone
    • 호남수학학술지
    • /
    • 제29권1호
    • /
    • pp.83-100
    • /
    • 2007
  • Normality is one of the most common assumptions made in sampling and statistical inference procedures without suffering from lack of attention. Its results may lead to an invalid conclusion. We present several testing procedures that can be used to evaluate the effects of departure from normality using concrete examples by hand or with the aid of Minitab. The goal is to influence prospective teachers in order to learn statistical concepts and techniques for testing normality on the basis of the didactical theory.

Bayesian One-Sided Testing for the Ratio of Poisson Means

  • 강상길;김달호;이우동
    • 한국데이터정보과학회:학술대회논문집
    • /
    • 한국데이터정보과학회 2006년도 PROCEEDINGS OF JOINT CONFERENCEOF KDISS AND KDAS
    • /
    • pp.295-306
    • /
    • 2006
  • When X and Y have independent Poisson distributions, we develop a Bayesian one-sided testing procedures for the ratio of two Poisson means. We propose the objective Bayesian one-sided testing procedures for the ratio of two Poisson means based on the fractional Bayes factor and the intrinsic Bayes factor. Some real examples are provided.

  • PDF

Bayesian Hypothesis Testing for the Difference of Quantiles in Exponential Models

  • Kang, Sang-Gil
    • Journal of the Korean Data and Information Science Society
    • /
    • 제19권4호
    • /
    • pp.1379-1390
    • /
    • 2008
  • This article deals with the problem of testing the difference of quantiles in exponential distributions. We propose Bayesian hypothesis testing procedures for the difference of two quantiles under the noninformative prior. The noninformative prior is usually improper which yields a calibration problem that makes the Bayes factor to be defined up to a multiplicative constant. So we propose the objective Bayesian hypothesis testing procedures based on the fractional Bayes factor and the intrinsic Bayes factor under the matching prior. Simulation study and a real data example are provided.

  • PDF